LOCUS AF169692 5546 bp mRNA linear HUM 27-OCT-2000
DEFINITION Homo sapiens protocadherin-9 (PCDH9) mRNA, complete cds.
ACCESSION AF169692
VERSION AF169692.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5546)
AUTHORS Kools,P.F.J. and Van Roy,F.
TITLE Identification and characterization of a novel human protocadherin
gene with high homology to a chromosome X-linked protocadherin
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5546)
AUTHORS Kools,P.F.J. and Van Roy,F.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-1999) Department of Molecular Biology, University
of Ghent, Flanders Interuniversity Institute for Biotechnology,
Ledeganckstraat 35, Ghent B-9000, Belgium
REFERENCE 3 (bases 1 to 5546)
AUTHORS Kools,P.F.J. and Van Roy,F.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) Department of Molecular Biology, University
of Ghent, Flanders Interuniversity Institute for Biotechnology,
Ledeganckstraat 35, Ghent B-9000, Belgium
REMARK Sequence update by submitter
COMMENT On Aug 18, 2000 this sequence version replaced AF169692.1.
FEATURES Location/Qualifiers
source 1..5546
/db_xref="H-InvDB:HIT000072356"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="VR4-11"
gene 1..5546
/gene="PCDH9"
CDS 119..3730
/gene="PCDH9"
/note="transmembrane protein of the cadherin superfamily;
similar to protocadherin-9 as reported by Strehl et al.
1998 Genomics 53:81-89"
/codon_start=1
/product="protocadherin-9"
/protein_id="AAF89689.2"
/translation="MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIP
KDLNISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGAS
YAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSR
FPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTY
VMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHA
TDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD
GSSTPARATVTINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKD
TDVNGKVICFIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSFKIVASDSGKPSLN
QTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQL
GPNASFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDEN
DNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYS
GVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNT
SFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEK
PAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGNASYIYDLIRRTMETPLDR
NIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRHASRFKAAQRSKQGAEW
MSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELEEQS
IGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNT
FVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFHLPDGSQESCS
DSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGL
AEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLT
RAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL"
BASE COUNT 1706 a 1131 c 1143 g 1566 t
ORIGIN
1 gtgatgagat ataatgcatc ctccagtcca tgcacgcttc ctcttgcaat ttgggcatca
61 ttcctcagtg gaaaccttta aaccctgaaa tccaggaaaa gaaaataaat acattatcat
121 ggacctgagg gatttttacc tgttggctgc tctgattgcc tgtttaaggc tggattccgc
181 aatagctcaa gaacttattt acactattag agaggaattg cctgaaaatg tgcccatagg
241 aaacatacca aaggatctga acatttctca catcaatgct gccacaggga ccagcgccag
301 ccttgtctac agactggttt ctaaagctgg ggatgcccct ttggtgaaag tatccagcag
361 cactggggaa attttcacaa cctccaacag aatagacaga gaaaaactct gtgctggcgc
421 ctcatatgct gaggagaatg agtgtttctt tgaacttgag gtggtgatcc tccccaatga
481 tttcttcagg ctgatcaaaa taaaaataat tgtcaaggat accaatgata atgcccccat
541 gtttccatct cctgtcatca atatttccat tccagaaaac actttgatca acagccgctt
601 tccaattcca tcagcaacag atcctgacac aggcttcaat ggtgtacagc attatgaatt
661 gttaaatggg cagagtgttt ttggactgga tatcgtggaa actccagagg gagagaagtg
721 gccacaactg attgttcagc aaaacttgga tagagaacag aaagatacct atgtgatgaa
781 aatcaaagta gaggatggag gcactccaca gaaatccagt acggccatac tgcaggtcac
841 agtaagtgat gtaaatgaca acaggccagt gtttaaagag ggtcaagtgg aggtgcatat
901 tccagagaat gctcccgtag gtacctctgt aattcagctc catgccactg atgcagatat
961 aggcagtaat gctgaaatcc ggtacatttt tggtgcccag gtcgcccctg caaccaaaag
1021 actctttgct ttaaataata ctactgggct gattacagtt cagaggtcct tagatagaga
1081 ggagacagcc attcacaaag tgacagtgct ggctagtgac ggcagctcca ctcctgctcg
1141 agcaacggtt accatcaatg tcaccgatgt aaatgataac cctcctaata tagacctcag
1201 gtacattata agtcccatca atggcaccgt gtatttatct gagaaagatc ctgtcaatac
1261 aaagattgcc ctaattacag tttcagataa ggacacagat gtgaatggca aagtgatctg
1321 ttttattgaa agagaggtcc catttcattt gaaggcggta tatgacaacc aatatttgtt
1381 agagacctct tctttgttgg actatgaggg caccaaagaa ttcagcttta aaattgttgc
1441 ctctgattct gggaagccca gtttaaatca gactgccctg gtaagggtta agcttgagga
1501 tgaaaatgac aacccaccaa ttttcaacca gcctgtaatt gagctgtcag tttctgaaaa
1561 caaccgacgt gggttatact taacaactat tagtgccaca gatgaagaca gtgggaaaaa
1621 tgcagacatt gtttatcagc ttggaccgaa tgcctccttc tttgatctgg accgaaaaac
1681 aggagttttg acagcctcca gagtatttga cagagaagaa caagaacgat tcatttttac
1741 agtaactgcc agggataatg ggacccctcc cctccaaagc caagcggctg tgattgttac
1801 tgttctggat gagaatgaca atagccccaa gtttactcat aatcattttc aattttttgt
1861 gtctgagaat ctgccaaagt atagtactgt gggggtaatc acagtgacag atgcagatgc
1921 tggagagaat aaagctgtga ctctttccat tctaaatgac aatgataatt ttgtgttgga
1981 tccctattct ggagtcataa agtcaaatgt ctcatttgat agagagcagc agagttccta
2041 cacttttgat gtcaaagcca ctgatggagg acaaccacct cgttcctcta ctgcaaaagt
2101 aactatcaac gtcatggatg tcaatgacaa cagcccagtt gtcatttctc caccgtctaa
2161 tacttccttt aagttggtgc ccctctcagc cattcctggc tccgtggtag cagaagtttt
2221 tgcagtggat gttgacactg gaatgaacgc tgaactaaag tatactatag tgagtggaaa
2281 caataaaggc ttattccgga ttgatccagt aacaggtaac attactctgg aagaaaaacc
2341 agcacctact gatgtgggat tgcatcgttt ggtggtcaac ataagtgacc tggggtaccc
2401 taagtctttg cacacgcttg tgcttgtatt cctttatgtt aacgacactg ctggaaatgc
2461 ctcctatatc tatgacttga tccgcaggac tatggagacc ccgttggaca ggaacatagg
2521 ggatagtagc caaccctatc aaaatgagga ctatctaacc atcatgattg ccatcatcgc
2581 cggtgccatg gtggtcattg ttgtgatctt cgtcaccgtt ctggtgcgct gtcgccatgc
2641 atcaaggttc aaagcagctc agaggagcaa gcaaggtgcc gaatggatgt ccccaaacca
2701 ggagaacaag caaaacaaga aaaagaaaag aaagaaaagg aagtctccca aaagctctct
2761 tttgaacttt gttactatcg aagagtccaa acccgatgat gcagttcatg aacctatcaa
2821 tgggacaata agcctgccgg ctgaactgga ggagcaaagt ataggaagat ttgactgggg
2881 cccggcacct ccaacaacat tcaagcctaa cagtcctgac ctggccaagc actacaaatc
2941 tgcttctcca cagcctgctt ttcatctcaa accagacact ccagtttccg tgaaaaagca
3001 ccacgtgatt caggaactcc ctttggacaa cacctttgtt gggggttgtg acaccctttc
3061 taaacgctct tccactagtt cagatcactt cagtgcctca gagtgcagtt cccaaggagg
3121 cttcaagaca aagggcccct tacacaccag acagtcgcag cgccgtgtta cgtttcatct
3181 ccctgatggc tcccaggaaa gctgcagtga cagtggtcta ggagaccatg agccggtggg
3241 tagtggaacc ctgatctcac accctcttcc tctggttcag ccacaggacg aattctatga
3301 ccaggcctct ccggacaaga ggactgaagc agatggcaac tctgatccca actctgatgg
3361 gcctttgggt ccccgaggat tagctgaagc tacagagatg tgcactcaag agtgcttggt
3421 tttgggtcac tctgataatt gctggatgcc tcctggcttg ggtccatatc aacaccccaa
3481 atctcctctc tcaacctttg caccccagaa agaatgggtg aagaaggaca agcttgtgaa
3541 tgggcacacc ctgaccagag cctggaaaga agacagcaac aggaaccagt tcaatgaccg
3601 taagcagtat ggctccaatg aaggccattt caacaatggc agccacatga cagacattcc
3661 tctggcaaat ctgaagtctt ataagcaagc aggaggtgct actgagagtc ctaaggagca
3721 ccaactctaa gaaaaggcta tatgggacct aataacttta aatagacatg ctaataccgt
3781 gtgcgtcaga gctttatgta ttcaatagat ctctacaact atgccccttc tagcagggat
3841 acctataact ttgtgttagc accatggaga atacaatgtt tttgcaacat atgagagaag
3901 atagttctag ccatgcaatt ttgtttacta gaattgatta cactctccag agatctctcc
3961 attgtgcaaa ttttttttat tattgcattt tattttgacc ctggactgct gctatgaaca
4021 atagaatatg catttggaaa gtaagaaagt ttcatggatt agagtgactg aaaaacatat
4081 ccagttagaa aattgtgctt tttttttttt ttttttttgt cattgatttg tgctgggact
4141 gctatacttg acattatact gcaaacaaaa cttaaagaga taagcattaa acctattgtg
4201 ctgttaacaa cgttagtgga cacttgtaag tcaatcagtg ttaaagtatt tgtaaataga
4261 agcaagctat tattaacaac ttttgtgtac ttataatgtt cacctaaaaa tgttgtagca
4321 taattctgtg ttttatggtt gcttctgtcc ttctttttat ttacctcttt gttgttattt
4381 ttgttgcttc tttcagtgag gtgtttctgt gttagtagtc tgtcttgaca cacattgttc
4441 aaacaatctc aagcacttgt gtttaaaaaa ggttctgaaa tcttgcttct catatgatag
4501 cttatgatgc cggaattctg taaacaataa agatgaaaga aaaaatgaaa actttataca
4561 aaaaaggact tctgcaaaag cttggaaatt cagaacctat tttttatcat cttattttca
4621 aagtaggcaa aagcaaaatc acttaattag caccattaag tgagagagta atggaaaacg
4681 gttatccacc aaaagtgata taatatcctg tacttgtcac tcatgtaaaa ctaatgtatc
4741 aaaattagca tatatggaag aaaaatcact attcaaaaat agtttcaatt gggcaaatgt
4801 gtgtctacaa ctttgttgaa atggcacagt ctgtgttgat cctcatatac aataatgttg
4861 ttgtaacaca agtgttatta gaccatagcc acaaaatatt taatgtgttg tgccttcatg
4921 atgtaacaga acattctcca ggtagggtag ttgggggaaa taaagggata aatctctaat
4981 tattgctgtt taactgtttg ttatcatagt tggtcaatgc ctggcaggta ccagcatatt
5041 gtcacttagg tcaaaccaat aaagtggcaa ctaatgttaa taagatttca gttgcacgtg
5101 caaacaaatc caaattcgaa cattcttaga aggtttttgt taaggcatga cagatgattt
5161 aaacaaataa atagcatgca acaaaatgtc tttattgaaa gaagtggaag ttatcttaat
5221 gccacggttc accatcaatt taaaagtaaa aaaaccaaaa aaaaaacaaa aaatttaaaa
5281 aaaaggtttg ctaatctgat agttaatttg ttcttaccaa aaaataaaat tactttgtaa
5341 atagcagttc acatttttcc acagtataat ggaaaataat gggtaggggt gcattgctta
5401 ttgaagtaca tttttgtcgg tttgtgaggg gtgtttgatg actttgacag aataaatatc
5461 taaacaatta tccttgttac tgctttgcca gttctacgtt atttacaatt attcagctct
5521 tgcaataaat gttctgaatt accaaa
//