LOCUS AF152521 2457 bp mRNA linear HUM 14-JUL-1999
DEFINITION Homo sapiens protocadherin gamma B5 short form protein
(PCDH-gamma-B5) variable region sequence, complete cds.
ACCESSION AF152521
VERSION AF152521.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE A striking organization of a large family of human neural
cadherin-like cell adhesion genes
JOURNAL Cell 97 (6), 779-790 (1999)
PUBMED 10380929
REFERENCE 2 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Human protocadherin genes
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-1999) Department of Molecular and Cellular
Biology, Harvard University, 7 Divinity Avenue, Cambridge, MA
02138, USA
FEATURES Location/Qualifiers
source 1..2457
/db_xref="H-InvDB:HIT000071825"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5q31"
gene 1..2457
/gene="PCDH-gamma-B5"
CDS 1..2457
/gene="PCDH-gamma-B5"
/function="cell-cell adhesion"
/note="member of the cadherin superfamily"
/codon_start=1
/product="protocadherin gamma B5 short form protein"
/protein_id="AAD43781.1"
/translation="MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKG
SVVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPAC
ALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDA
DIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGG
HPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSE
ITYSFYRTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQ
DENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIIS
SSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQ
ASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSG
VVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPD
GSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRT
ARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQA
ELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYS
QGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPE
LVSFIYVYSFSLPTQFSVFT"
BASE COUNT 583 a 665 c 646 g 563 t
ORIGIN
1 atggggagcg gcgccgggga gctgggccgg gctgagaggc tgccagtgct ctttctcttc
61 ctgctgtctt tgttctgccc ggcgctctgt gagcagatcc gctacaggat tcccgaggaa
121 atgcccaagg gctccgtagt ggggaacctc gccacggacc tggggttcag cgtccaggag
181 ttaccgactc gaaaactgcg cgtcagttcg gagaagcctt acttcaccgt gagcgcagag
241 agcggggagt tgcttgtgag cagcaggcta gacagggagg agatatgcgg gaagaagcca
301 gcttgtgctc tggaatttga ggctgttgct gaaaatccac tgaactttta tcacgtgaat
361 gtggagatcg aggacattaa tgaccacacg ccaaaattca cgcaaaattc ctttgagctg
421 caaataagtg agtctgcaca gcctggcaca agatttatac tagaagtagc agaagatgca
481 gatattggct taaactctct gcagaagtat aaactctctc ttaacccaag tttctcatta
541 ataattaagg agaaacagga tggtagtaaa tacccggaac tggcactgga gaaaacctta
601 gaccgggaac aacagagtta ccatcgttta gtcctgactg ccttggacgg tggacatcca
661 cccctaagcg gcaccactga gctccggatc caggtaaccg acgccaatga taatcccccg
721 gtattcaacc gagacgtgta cagagtcagc cttcgggaaa acgtgccacc aggcaccact
781 gtgttgcaag tgtcagccac tgaccaagac gagggcatca actcagaaat tacttattcc
841 ttctacagaa ccgggcaaat ctttagtctg aattcaaaga gcggagaaat taccactcaa
901 aagaaactgg attttgaaga gaccaaggaa tattcaatgg ttgtagaagg gagggatggt
961 ggtggactgg ttgcacaatg tacagttgaa attaatattc aagatgaaaa tgacaatagc
1021 ccagaagtta cattccattc tctacttgaa atgattctgg aaaacgcggt gcctggaaca
1081 ctaattgctt tgatcaaaat acatgaccaa gattctgggg aaaatgggga ggttaattgt
1141 caattacaag gcgaagtccc ttttaagatt atctcttcat ccaaaaattc gtataagttg
1201 gtaacagatg gaaccctaga ccgagagcaa accccggagt acaatgtcac catcacagcc
1261 acagacaggg gcaagccgcc cctctcctcc agcataagcg tcatcctaca tatcagagac
1321 gtcaacgata acgctccggt tttccaccag gcgtcctact tagtcagtgt acccgaaaac
1381 aaccctcctg gggcctccat cgcgcaagtc tgcgcctcgg acctggactt ggggttgaac
1441 ggccaagtct cctactctat catggccagc gacctagagc ctctggcact ggcctcttac
1501 gtgtccatga gcgcgcaaag tggggtggtg ttcgcgcagc gcgcctttga ctacgagcag
1561 ctgcgcacct tcgaactcac actacaggcc cgcgaccagg gctcgcctgc gctcagcgca
1621 aacgtgagcc tgcgcgtgtt ggtgggcgac cgaaacgaca acgcaccgcg ggtgctgtac
1681 cccgcgctgg gtcccgacgg ctctgcgctc ttcgatatgg tgccgcgcgc tgcagagccc
1741 ggctacctgg tgaccaaggt agtggccgtg gacgcagact caggacacaa cgcctggctg
1801 tcctaccacg tgctgcaggc tagcgagccc gggctcttca gcctggggct gcgcacagga
1861 gaggtgcgca cagcgcgtgc cttgggcgac agggacgcgg cccgccagcg cctgctggtt
1921 gctgtgcgtg atggtggaca gccgccactc tccgccaccg ccacgctgca cttggtcttt
1981 gctgacagct tgcaggaggt gctgccggat atcactgacc gccctgtacc ctctgacccc
2041 caggctgagc tgcagtttta cctagtggtg gccttggcct tgatctcagt gctcttcctc
2101 ctggccgtga ttctggccgt tgccttgcgc ctgcgacgct cctccagccc tgccgcctgg
2161 agctgcttcc aacctggtct ctgtgtcaag tctggacctg tggttccccc caactacagt
2221 caggggactt tgccttattc ctacaaccta tgtgttgcac atacaggaaa gacggagttt
2281 aatttcctaa aatgtagtga gcaattgagt tcaggacaag acatactttg tggtgattca
2341 tctggggcct tatttccact ttgtaattcc agcgagtcga cttcccatcc tgagttggtg
2401 agtttcattt atgtctattc tttttcatta cccacccaat tttctgtatt tacatga
//