LOCUS AF152473 2457 bp mRNA linear HUM 14-JUL-1999
DEFINITION Homo sapiens protocadherin alpha C1 short form protein
(PCDH-alpha-C1) variable region sequence, complete cds.
ACCESSION AF152473
VERSION AF152473.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE A striking organization of a large family of human neural
cadherin-like cell adhesion genes
JOURNAL Cell 97 (6), 779-790 (1999)
PUBMED 10380929
REFERENCE 2 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Human protocadherin genes
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2457)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-1999) Department of Molecular and Cellular
Biology, Harvard University, 7 Divinity Avenue, Cambridge, MA
02138, USA
FEATURES Location/Qualifiers
source 1..2457
/db_xref="H-InvDB:HIT000071777"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5q31"
gene 1..2457
/gene="PCDH-alpha-C1"
CDS 1..2457
/gene="PCDH-alpha-C1"
/function="cell-cell adhesion"
/note="member of the cadherin superfamily"
/codon_start=1
/product="protocadherin alpha C1 short form protein"
/protein_id="AAD43734.1"
/translation="MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLR
LPAAAMSSRNFRFLSSHRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLE
DPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILS
YSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQ
VTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNST
QAELRHRFHVHPKSGEVQVAASLGPPETLLEAYIEARDEGVFGLASTAKLLVEVTDVN
DHAPELDFLTLSNPVPEDAAPGTVIALFSVKDEDLDSNGRVICGMSSAGPFQLTASFD
NYYSLLIDGPLDREQISEYQVLITASDSGSPPLSTRRTITVSVADVNDNTPNFPQPQQ
ELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISEGPSASSLVAVESSSGAIT
AKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVILFPLPRNGSVP
VEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGELRTARLV
LPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNL
YLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCRSTEDLRYGSKMVSNPCMTSA
TIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADLRNLATGVGLNLPISCIQI
RNRKGDHANVNAMVSKFYGI"
BASE COUNT 534 a 641 c 672 g 610 t
ORIGIN
1 atggtgggct gtggggtggc agttttatgt ttgtgggttt cctgcggcgc tgcagcggga
61 cagctcgagt actcagtgcc ggaggagacg gagcggggcg tagccgtagg caatctctcc
121 gcggacttga ggctgccagc ggccgctatg tcctcgcgga actttcgctt cctttccagc
181 caccgcgagc tctacttcgg ggtggatcta cccagcggca atttggtggt cagagagccg
241 gcggaccgcg aacagctgtg cagggccaaa gctgcctgcg tcttgaccta cgacctggtg
301 ctcgaggacc cgctggagct gcacaagatt cggattcacg tcctggacac caatgacaac
361 tcacctctct ttcctgccgg cgacgtgcag ctgcacatcc ccgagttcct gacgcccgga
421 gcccgcttta ctctcccgaa tgcccaagat gacgacgagg gaagcaatgg gatactaagc
481 tacagcctaa gccccagtca gcactttcgc ctggacatgg gatcgcgggt tgacggcagc
541 gaatacccgg agttggtgtt ggagaaagca ctggatcgcg aacagcgcgc cacccacctg
601 ctggtgctta cagctcggga cggcgggcta cctgcccgct caggagacgc acaagtcacc
661 atcattgtgg tggacacaaa tgacaacgcg cctgtatttg agcgctccgt ataccgcacc
721 aaggttccag agactgcacc caatgggact gtgttattcc gagttcaagc cttggatcca
781 gatgaagggt ccaatgggga agtccaatac tccctaagca acagcacgca agcagagctg
841 cgacaccgct ttcacgtgca ccctaaaagt ggggaggtgc aagtagctgc ttcactaggt
901 ccgcctgaaa cgctcttgga ggcatacatt gaggcgaggg acgaaggtgt ctttggttta
961 gctagcaccg ctaaactgct ggtggaggtg actgacgtga acgatcatgc ccccgaactg
1021 gacttcctga ctctttcgaa cccagtacct gaggacgctg cccctggcac agtgattgct
1081 ctctttagtg taaaggatga agacctcgat tctaatggta gggtcatttg tggcatgtct
1141 agtgcaggcc cttttcagct gacggcttcc tttgacaact actacagcct gctgattgat
1201 gggcccctgg accgggagca gatcagtgaa taccaagtcc tgatcacggc ctcagatagt
1261 ggctcaccgc cacttagcac ccgaaggaca atcactgtgt cagttgctga tgtgaatgac
1321 aatacaccaa actttcctca accccagcag gaacttttcg ttgctgaaaa caatggccct
1381 ggggcctctc taggccgagt gtttgcccag gaccccgacc tggggaagaa tggccttgtc
1441 tcttatgagc tgttggatgt tatctctgaa gggccatcag cctctagctt ggtggcagtg
1501 gaatcatcca gtggggccat cactgccaaa acttcctttg actttgagca gctcaggggg
1561 tttcatttcc aagtagaagg ccgggatggt ggcattcctc ccagaagtgc aacagtgact
1621 ataaacttgt ttgtggtaga taggaatgac aattatccgg ttatcttgtt tcccttgccc
1681 agaaatggtt ctgtcccagt ggaaattgtg ccccgctctg ccaggactgg acacttggtc
1741 acaaaagtgg tagcagagga tgctgacagt ggttctaatg cctggctttc ctaccacatc
1801 tcccgggcgt ctgactctag tctctttaga atttcagcca atataggtga gctccgtact
1861 gctcgcttag ttcttcccac tgatgcagtt aagcagaggg tggtggtagt ggttcgggac
1921 catggagacc caccactttc ctcctctgtc actctgggtg tgctgttgag caactctgtc
1981 cctcagttac ttccagactt tgaagatgtc tgggaaccag gagggcagct ttctgcccag
2041 aacttgtatt tagtaattgc cttggcttgt atttcctttt tatttctggg gtgcttactt
2101 ttcttcgtgt gtaccaagtt gcaccagagc ccaggctgtt gcgctcagag ctgctgtcgc
2161 tctacagagg atctgaggta tggaagtaag atggtttcaa atccttgcat gacatcagcc
2221 accatagatg tcactacagt tgagagactt tctcagactt atctctatcg ggcctctctg
2281 ggacttggtt ctgataataa cagtttgctg ttgcgtgggg agtacaatgc tgccgacctg
2341 cgaaatcttg ccactggggt aggactgaat ttgccaatat cctgtattca gattcggaat
2401 aggaaagggg atcacgctaa tgtcaatgcc atggtaagca aattttatgg aatttga
//