LOCUS AF152326 4605 bp mRNA linear HUM 22-JUL-1999
DEFINITION Homo sapiens protocadherin gamma A6 (PCDH-gamma-A6) mRNA, complete
cds.
ACCESSION AF152326
VERSION AF152326.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4605)
AUTHORS Wu,Q. and Maniatis,T.
TITLE A striking organization of a large family of human neural
cadherin-like cell adhesion genes
JOURNAL Cell 97 (6), 779-790 (1999)
PUBMED 10380929
REFERENCE 2 (bases 1 to 4605)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Human protocadherin genes
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4605)
AUTHORS Wu,Q. and Maniatis,T.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-1999) Department of Molecular and Cellular
Biology, Harvard University, 7 Divinity Avenue, Cambridge, MA
02138, USA
FEATURES Location/Qualifiers
source 1..4605
/db_xref="H-InvDB:HIT000071752"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5q31"
/tissue_type="brain"
gene 1..4605
/gene="PCDH-gamma-A6"
CDS 1..2799
/gene="PCDH-gamma-A6"
/function="cell-cell adhesion"
/note="member of the cadherin superfamily"
/codon_start=1
/product="protocadherin gamma A6"
/protein_id="AAD43720.1"
/translation="MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSF
VGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRC
LVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDP
DVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGG
DPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGE
VTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARDGPGLRDRAKVL
ITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPRSLPF
ELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTETIISLNVADTNDNPP
TFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTLQGAPLSSYVSIN
SDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPA
LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSA
KPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSHF
VGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQESYEKSEPLLITQDLL
ETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA
SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK"
BASE COUNT 1028 a 1372 c 1212 g 993 t
ORIGIN
1 atggcgcctc cgcagaggca tccgcagcgc agcgagcagg tcctgctcct cacgctcctg
61 gggacgctgt ggggggccgc ggcagcgcag atccgctact ctattcccga ggagctggag
121 aaaggctcct tcgtaggcaa catcgtcaag gatctgggac tggagcccca ggagttggcg
181 gagcacggag tccgcatcgt ctccagaggt aggatgcagc ttttctctct gaatccgcga
241 aacggcagct tggtcaccgc gggtaggata gaccgcgagg agctctgtgc tcagagcccg
301 cggtgtctgg tgagttttaa catccttgtc gaggataaac tgaatcttta tcccgtggaa
361 gtggaaatag tggacattaa tgacaataca ccccgattct taaaggaaga attggaagtg
421 aaaattctcg aaaacgcagc tccatcctct cgttttccac taatggaggt ctatgaccct
481 gatgtgggaa tgaactccct tcagggattt aagctcagtg gtaatagtca cttctcagtg
541 gacgtgcaaa gcgaagccca tgggcccaag tacccggagc tggtgctgga gggcacactg
601 gaccgggaag gagaagccgt ttaccgcctg gtccttactg ccatggatgg cggcgaccct
661 gtccgctcaa gcgtcgccca aattctggta acagttctag atgtgaatga caacactcca
721 atgtttactc agcctgtcta ccgtgtaagt gttcctgaaa acctgccagt aggcacacca
781 gtgttggcag tgactgccac cgaccaggat gaaggagtcc acggggaagt aacttattcc
841 tttgtgaaga ttacagaaaa gatctcacaa attttctgtt tgaatgtttt gactggagaa
901 atttcaactt ctgcaaatct agactatgag gactcgagtt tttatgagct gggtgttgaa
961 gcccgggatg ggccaggtct tcgagacaga gcgaaagtct taataactat cttggatgtc
1021 aatgataatg taccagaagt ggttgttaca tctggaagca gaacaattgc tgaaagtgca
1081 cctccaggaa cagtaatcgc cctttttcaa gtgttcgatc gagactctgg cctgaatggc
1141 ctggtaacct gttccatccc gagaagtctc ccatttgaat tggaaaaatc agttggcaat
1201 tattatcgat tagtgacaaa tgcagctcta gaccgggaag aggtattctt gtacaacatc
1261 actgtgacag ccacggacaa aggaacacca cctctgtcta cagaaacaat catctctcta
1321 aatgtggcag acaccaacga caacccgccc accttccccc attcatccta ctcagtctat
1381 gtccttgaaa acaaccccag gggtgcctcc atcttctctg tgaatgcact ggaccctgac
1441 gtggaccaga acgcccaagt ctcctactca ctggcagaag acaccctcca gggggcgccc
1501 ctgtcctcct acgtgtccat caactccgac actgggattc tgtacgccct gcgctccttc
1561 gactatgagc agttgagaga cctacagctg tgggtgacag ccagcgacag cggggacccg
1621 cctcttagca gcaacgtgtc actgagcctg tttgtgctgg accagaatga caatgcgccc
1681 gagatcctgt accccgccct ccccacagac ggttccactg gcgtggagct ggcgccccgc
1741 tccgcagagc ccggctacct ggtgaccaag gtggtggcgg tggacagaga ctcgggccag
1801 aacgcctggc tgtcctaccg cctgctcaag gccagcgagc caggactttt ctcagtgggc
1861 ctgcacacgg gcgaggtgcg cacggcgcgc gccctgctgg acagagacgc gctcaagcag
1921 agcctagtgg tggccgtcca ggaccacggc cagccccctc tctccgccac tgtcacgctc
1981 accgtggccg tggccgacag gatccccgac atcctggccg acctgggcag cctcgagccc
2041 tccgccaaac ccaacgattc ggacctcact ctgtacctgg tggtggcggt ggccgcggtc
2101 tcctgcgtct tcctggcctt cgtcatcgtg ctgctggcgc tcagactgca gcgctggcac
2161 aagtcacgcc tgctgcaggc ttcgggaggt ggcttagcga gcatgcccgg ctcgcacttt
2221 gtgggcgtgg aaggggttcg ggctttcctg cagacctatt cccacgaggt ctcactcact
2281 gcagactcgc gtaagagtca tctgattttc ccccagccca actatgccga cacgcttatc
2341 aaccaggaga gctatgagaa aagcgagcct cttctgataa ctcaggattt acttgaaacg
2401 aaaggagaac ccaggcaact tcagcaagcc ccgcccaaca cggactggcg tttctctcag
2461 gcccagagac ccggcaccag cggctcccaa aatggcgatg acaccggcac ctggcccaac
2521 aaccagtttg acacagagat gctgcaagcc atgatcttgg cgtccgccag tgaagctgct
2581 gatgggagct ccaccctggg agggggtgcc ggcaccatgg gattgagcgc ccgctacgga
2641 ccccagttca ccctgcagca cgtgcccgac taccgccaga atgtctacat cccaggcagc
2701 aatgccacac tgaccaacgc agctggcaag cgggatggca aggccccagc aggtggcaat
2761 ggcaacaaga agaagtcggg caagaaggag aagaagtaac atggaggcca ggccaagagc
2821 cacagggcgg cctctcccca accagcccag cttctcctta cctgcaccca ggcctcagag
2881 tttcagggct aacccccaga atactggtag gggccaaggc catgctcccc ttgggaaaca
2941 gaaacaagtg cccagtcagc acctacccct tcccccccag ggggttgaat atgcaaaagc
3001 agttccgctg ggaaccccca tccaatcaac tgctgtaccc atgggggtag tggggttact
3061 gtagacacca agaaccattt gccacacccc gtttagttac agctgaactc ctccatcttc
3121 caaatcaatc aggcccatcc atcccatgcc tccctcctcc ccaccccact ccaacagttc
3181 ctctttcccg agtaaggtgg ttggggtgtt gaagtaccaa gtaacctaca agcctcctag
3241 ttctgaaaag ttggaagggc atcatgacct cttggcctct cctttgattc tcaatcttcc
3301 cccaaagcat ggtttggtgc cagccccttc acctccttcc agagcccaag atcaatgctc
3361 aagttttgga ggacatgatc accatcccca tggtactgat gcttgctgga tttagggagg
3421 gcattttgct accaagcctc ttcccaacgc cctggggacc agtcttctgt tttgtttttc
3481 attgtttgac gtttccactg catgccttga cttcccccac ctcctcctca aacaagagac
3541 tccactgcat gttccaagac agtatggggt ggtaagataa ggaagggaag tgtgtggatg
3601 tggatggtgg gggcatggac aaagcttgac acatcaagtt atcaaggcct tggaggaggc
3661 tctgtatgtc ctcaggggac tgacaacatc ctccagattc cagccataaa ccaataacta
3721 ggctggaccc ttcccactac ataatagggc tcagcccagg cagccagctt tgggctgagc
3781 taacaggacc aatggattaa actggcattt cagtccaagg aagctcgaag caggtttagg
3841 accaggtccc cttgagaggt cagaggggcc tctgtgggtg ctgggtactc cagaggtgcc
3901 actggtggaa gggtcagcgg agccccagca ggaagggtgg gccagccagg ccattcttag
3961 tccctgggtt ggggaggcag ggagctaggg cagggaccaa atgaacagaa agtctcagcc
4021 caggatgggg cttcttcaac agggcccctg ccctcctgaa gcctcagtcc ttcaccttgc
4081 caggtgccgt ttctcttccg tgaaggccac tgcccaggtc cccagtgcgc cccctagtgg
4141 ccatagcctg gttaaagttc cccagtgcct ccttgtgcat agaccttctt ctcccacccc
4201 cttctgcccc tgggtccccg gccatccagc ggggctgcca gagaacccca gacctgccct
4261 tacagtagtg tagcgccccc tccctctttc ggctggtgta gaatagccag tagtgtagtg
4321 cggtgtgctt ttacgtgatg gcgggtgggc agcgggcggc gggctccgcg cagccgtctg
4381 tccttgatct gcccgcggcg gcccgtgttg tgttttgtgc tgtgtccacg cgctaaggcg
4441 accccctccc ccgtactgac ttctcctata agcgcttctc ttcgcatagt cacgtagctc
4501 ccaccccacc ctcttcctgt gtctcacgca agttttatac tctaatattt atatggcttt
4561 ttttcttcga caaaaaaata ataaaacgtt tcttctgaaa agctg
//