LOCUS AF126164 834 bp mRNA linear HUM 31-AUG-1999 DEFINITION Homo sapiens alternative HHLA3 protein (HHLA3) mRNA, complete cds. ACCESSION AF126164 VERSION AF126164.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 834) AUTHORS Mager,D.L., Hunter,D.G., Schertzer,M. and Freeman,J.D. TITLE Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3) JOURNAL Genomics 59 (3), 255-263 (1999) PUBMED 10444326 REFERENCE 2 (bases 1 to 834) AUTHORS Mager,D.L., Hunter,D.G., Schertzer,M. and Freeman,J.D. TITLE Direct Submission JOURNAL Submitted (04-FEB-1999) Terry Fox Laboratory, B.C. Cancer Agency, 601 W. 10th Avenue, Vancouver, BC V5Z1L3, Canada FEATURES Location/Qualifiers source 1..834 /db_xref="H-InvDB:HIT000070534" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:152865" /note="complete sequence of the clone" gene 1..834 /gene="HHLA3" /gene_synonym="HERV-H LTR-associating gene 3" CDS 124..354 /gene="HHLA3" /gene_synonym="HERV-H LTR-associating gene 3" /note="product of alternative splicing" /codon_start=1 /product="alternative HHLA3 protein" /protein_id="AAD33289.1" /translation="MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPT FTEHLLRAVLSTERGPYPDPKRAFLDLLQERI" repeat_region <292..>373 /gene="HHLA3" /gene_synonym="HERV-H LTR-associating gene 3" /rpt_family="MER41" /rpt_type=dispersed repeat_region complement(<374..>425) /rpt_family="LTR10A" repeat_region 438..829 /gene="HHLA3" /gene_synonym="HERV-H LTR-associating gene 3" /note="LTR of the HERV-H retrovirus" /rpt_type=long_terminal_repeat regulatory 806..811 /regulatory_class="polyA_signal_sequence" /gene="HHLA3" /gene_synonym="HERV-H LTR-associating gene 3" /note="present within HERV-H retrovirus LTR; utilized by HHLA3 gene" BASE COUNT 215 a 250 c 175 g 194 t ORIGIN 1 cgcctccgag gcagtgtgtt tccgcccaga gctggagtct cccagctgcc agccgacccc 61 gaacccgcac tcccgccaac cgcgcttttt gtgggcggtc ggaaaccaca gcctccgttg 121 gatatgttcg gtgcatgtta taaacaacca cttaaaccct ccggatctga gcctcccgca 181 gaggaatgca gaatgacgcc acggcacgca ggatgtgatg tcaccgagat gcagaggata 241 ctcagtcaac caacatttac tgagcatcta cttcgtgccg tcttgtcaac ggaaaggggt 301 ccctatccag accccaagag agcattcttg gatctcttgc aagaaagaat ttgaggcgaa 361 tccatagagt aagcaaggca agttacttct atatagaagg gtgcaccctt acagatcaaa 421 caatgcttag tgatgtgtgt cagacctctg agcccaagca aagccatcat atcccctgtg 481 acctgcatgt atacatccag atggcctgaa gcaagtgaag aatcacaaaa gaagtgaaaa 541 gggccggttc ctgccttaac tgatgacatt ccaccattgt gatttgttcc tgccccacct 601 taactgagcg attaacctgt gaacttcctt ctcctggctc agaagcttcc ccactgagca 661 ccttgtgacc cccgcccctg cctgccatag aacaaccccc tttgattgta attttccttt 721 acctacccaa atcctataaa acggccccac ccctatctcc cttcgctgac actctctttg 781 gactcagcct gcctgcacct aggtgattaa aaagctttat tgtcacgcaa aaaa //