LOCUS AF093730 1404 bp DNA linear PLN 26-JUL-2016
DEFINITION Coptis trifolia ribulose-1,5-bisphosphate carboxylase oxygenase,
large subunit (rbcL) gene, partial cds; chloroplast gene for
chloroplast product.
ACCESSION AF093730
VERSION AF093730.1
KEYWORDS .
SOURCE chloroplast Coptis trifolia
ORGANISM Coptis trifolia
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Ranunculales; Ranunculaceae;
Coptidoideae; Coptis.
REFERENCE 1 (bases 1 to 1404)
AUTHORS Hoot,S.B., Magallon,S. and Crane,P.R.
TITLE Phylogeny of basal eudicots based on three molecular data sets:
atpB, rbcL, and 18S nuclear ribosomal DNA sequences
JOURNAL Ann. Mo. Bot. Gard. 86, 1-32 (1999)
REFERENCE 2 (bases 1 to 1404)
AUTHORS Hoot,S.B.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-1998) Biological Sciences, Univ. of
Wisconsin-Milwaukee, PO Box 413, Milwaukee, WI 53201, USA
FEATURES Location/Qualifiers
source 1..1404
/organism="Coptis trifolia"
/organelle="plastid:chloroplast"
/mol_type="genomic DNA"
/db_xref="taxon:38790"
gene <1..1404
/gene="rbcL"
CDS <1..1404
/gene="rbcL"
/codon_start=1
/product="ribulose-1,5-bisphosphate carboxylase/oxygenase
large subunit"
/protein_id="AAF01668.1"
/translation="ASVGFKAGVKDYKLNYYTPQYTPKDTDTLAAFRVTPQPGVPPEE
AGAAVAAESSTGTWTTVWTDGLTSLDRYKGXCYDIEPVAGEENQYICYVAYPLDLFEX
XXXXXXXXXIVGXXFGFKALXXLRLEDLRIPIAYVKTFQGPPHGIQVERDKLNKYGRP
LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIY
KAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYC
RDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAXALRMSGGDHIHSGTVVGKLEGEREIT
LGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVL
QFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREACKWSLELAAA
CEVWKEIKFEFDAMDTL"
BASE COUNT 369 a 270 c 342 g 377 t
ORIGIN
1 gcaagtgttg gcttcaaagc gggcgttaaa gattacaaat tgaattatta tactcctcaa
61 tatacaccca aagatactga taccctggca gcattccgag taactcctca acctggagtt
121 ccaccggaag aagcgggggc tgctgtagct gccgaatctt ctacaggtac atggacaact
181 gtgtggaccg atggacttac cagccttgat cgttacaaag gannatgcta cgacatcgag
241 cccgttgctg gagaagaaaa tcaatatatt tgttatgtag cctatccttt agaccttttt
301 gaannnnnnn nnnnnnnnnn nnnnnnnnnn nnnattgtgg gnnntgnntt tgggttcaaa
361 gcgctacnnn nnctacgtct ggaggatctg cgaattccta ttgcttatgt taaaactttc
421 cagggcccgc ctcatggtat ccaagttgag agagataaat tgaacaagta tggtcgtccc
481 ctattgggat gtactattaa accaaaattg ggattatccg ctaagaacta cggtagagcg
541 gtttatgaat gtctccgcgg tggacttgat tttaccaagg atgatgagaa cgtgaactcc
601 caaccattta tgcgttggag agaccgtttc ctattttgtg ctgaagcaat ttataaagca
661 caagccgaaa ccggtgaaat caaaggacat tacttgaatg ctactgcggg tacatgcgaa
721 gaaatgataa aaagggctgt atttgccaga gagttggggg tgcccatcgt aatgcatgac
781 tacttaacgg ggggattcac cgcaaatact agcttggctc attattgccg agataatggt
841 ctacttcttc acattcaccg cgcaatgcat gcagttattg atagacagaa gaatcatggt
901 atacatttcc gtgtactagc tnnngcgtta cgtatgtctg gtggagatca tattcactcn
961 ggtaccgtag taggtaaact agaaggggaa agagagatca ccctgggctt tgttgattta
1021 ctacgcgacg attttattga aaaagaccga agtcgcggta tttacttcac tcaagattgg
1081 gtatctctac caggtgttct gcctgttgct tcagggggta ttcacgtttg gcatatgcct
1141 gctttgaccg agatctttgg ggatgattcc gtactacagt tcggtggagg aactttagga
1201 catccttggg gaaatgcacc gggtgccgta gctaatcgag tagccctaga agcctgtgta
1261 caagctcgta atgagggacg tgatcttgct cgtgaaggta atgaaattat ccgcgaggct
1321 tgcaaatgga gccttgaact agctgctgct tgtgaggtat ggaaggagat caaattcgaa
1381 tttgacgcaa tggatacttt gtaa
//