LOCUS AF035685 4153 bp mRNA linear HUM 24-JUL-2016 DEFINITION Homo sapiens voltage-gated sodium channel, subtype III (SCN3A) mRNA, alternatively spliced neonatal isoform, partial cds. ACCESSION AF035685 VERSION AF035685.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4153) AUTHORS Lu,C.M. and Brown,G.B. TITLE Isolation of a human-brain sodium-channel gene encoding two isoforms of the subtype III alpha-subunit JOURNAL J. Mol. Neurosci. 10 (1), 67-70 (1998) PUBMED 9589372 REFERENCE 2 (bases 1 to 4153) AUTHORS Lu,C.-M. and Brown,G.B. TITLE Direct Submission JOURNAL Submitted (24-NOV-1997) Psychiatry and Behavioral Neurobiology, University of Alabama at Birmingham, 1720 7th Ave. South, Sparks Ctr., Room 1075, Birmingham, AL 35294-0017, USA FEATURES Location/Qualifiers source 1..4153 /db_xref="H-InvDB:HIT000063281" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="2" /map="2q24-q31" /sex="female" /tissue_type="cerebral cortex of brain" /dev_stage="15-yr-old" /note="from a Caucasian individual; Marathon-Ready cDNA from Clontech, catalog #7420-1" gene 1..>4153 /gene="SCN3A" CDS 55..>4153 /gene="SCN3A" /note="neonatal isoform generated from alternative splicing" /codon_start=1 /product="voltage-gated sodium channel, subtype III" /protein_id="AAC29514.1" /translation="MAQALLVPPGPESFRLFTRESLAAIEKRAAEEKAKKPKKEQDND DENKPKPNSDLEAGKNLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVMNKGKAIFRF SATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTNCVFMTLSNPPDWTKNVEYT FTGIYTFESLIKILVRGFCLEDFTFLRDPWNWLDFSVIVMAYVTEFVSLGNVSALRTF RVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNK CLQWPPSDSAFETNTTSYFNGTMDSNGTFVNVTMSTFNWKDNIGDDSHFYVLDGQKDP LLCGNGSDAGQCPEGYICVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDYWENLYQLT LRAAGKTYTIFFVLVIFLGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLE QLKKQQEEAQAVAAASAASRDFSGIGGLGELLESSSEASKLSSKSAKEWRNRRKKRRQ REHLEGNNKGERDSFPKSESEDSVKRSSFLFSMDGNRLTSDKKFCSPHQSLLSIRGSL FSPRRNSKTSIFSFRGRAKDVGSENDFADDEHSTFEDSETRRDSLFEPHRHGERRNSN GTTTETEVRKRRLSSYQISMEMLEDSSGRQRAVSIASILTNTMEELEESRQKCPPCWY RFANVFLIWDCCDAWLKVKHLVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFS SVLTVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSLMELGLSNVEGL SVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG KSYKECVCKINDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIV FMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDYVKNK MRECFQKAFFRKPKVIEIHEGNKIDSCMSNNTGIEISKALNYLRDGNGTTSGVGTGSS VEKYVIDENDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESELEESKEKLNATS SSEGSTVDVVLPREGEQAETEPEEDLKPEACFTEGCIKKFPFCQVSTEEGKGKIWWNL RKTCYSIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFIL EMLLKWVAYGFQTYFTNAWCRLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRP LRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNMTT GNMFDISDVNNLSDCQALGKQARWKNVKVNFDNVGAGYLALLQVVS" misc_feature 657..748 /gene="SCN3A" /note="location of neonatal isoform specific exon" BASE COUNT 1218 a 795 c 969 g 1171 t ORIGIN 1 taaggtaatt cgtatgcaag aagctacacg taattaaatg tgcaggatga aaagatggca 61 caggcactgt tggtaccccc aggacctgaa agcttccgcc tttttactag agaatctctt 121 gctgctatcg aaaaacgtgc tgcagaagag aaagccaaga agcccaaaaa ggaacaagat 181 aatgatgatg agaacaaacc aaagccaaat agtgacttgg aagctggaaa gaaccttcca 241 tttatttatg gagacattcc tccagagatg gtgtcagagc ccctggagga cctggatccc 301 tactatatca ataagaaaac ttttatagta atgaataaag gaaaggcaat tttccgattc 361 agtgccacct ctgccttgta tattttaact ccactaaacc ctgttaggaa aattgctatc 421 aagattttgg tacattcttt attcagcatg cttatcatgt gcactatttt gaccaactgt 481 gtatttatga ccttgagcaa ccctcctgac tggacaaaga atgtagagta cacattcact 541 ggaatctata cctttgagtc acttataaaa atcttggtaa gagggttttg cttagaagat 601 tttacgtttc ttcgtgatcc atggaactgg ctggatttca gtgtcattgt gatggcgtat 661 gtaacagaat ttgtaagcct aggcaatgtt tcagcccttc gaactttcag agtcttgaga 721 gctctgaaaa ctatttctgt aattccaggt ttaaagacca ttgtgggggc cctgatccag 781 tcggtaaaga agctttctga tgtgatgatc ctgactgtgt tctgtctgag cgtgtttgct 841 ctcattgggc tgcagctgtt catgggcaat ctgaggaata aatgtttgca gtggccccca 901 agcgattctg cttttgaaac caacaccact tcctacttta atggcacaat ggattcaaat 961 gggacatttg ttaatgtaac aatgagcaca tttaactgga aggataacat tggagatgac 1021 agtcactttt atgttttgga tgggcaaaaa gaccctttac tctgtggaaa tggttcagat 1081 gcaggccagt gtccagaagg atacatctgt gtgaaggctg gtcgaaaccc caactatggc 1141 tacacaagct ttgacacctt tagctgggct ttcctgtctc tatttcgact catgactcaa 1201 gactactggg aaaatcttta ccagttgaca ttacgtgctg ctgggaaaac atacacgata 1261 ttttttgtcc tggtcatttt cttgggctca ttttatttgg tgaatttgat cctggctgtg 1321 gtggccatgg cctatgagga gcagaatcag gccaccttgg aagaagcaga acaaaaagag 1381 gccgaatttc agcagatgct cgaacagctt aaaaagcaac aggaagaagc tcaggcagtt 1441 gcggcagcat cagctgcttc aagagatttc agtggaatag gtgggttagg agagctgttg 1501 gaaagttctt cagaagcatc aaagttgagt tccaaaagtg ctaaagaatg gaggaaccga 1561 aggaagaaaa gaagacagag agagcacctt gaaggaaaca acaaaggaga gagagacagc 1621 tttcccaaat ccgaatctga agacagcgtc aaaagaagca gcttcctttt ctccatggat 1681 ggaaacagac tgaccagtga caaaaaattc tgctcccctc atcagtctct cttgagtatc 1741 cgtggctccc tgttttcccc aagacgcaat agcaaaacaa gcattttcag tttcagaggt 1801 cgggcaaagg atgttggatc tgaaaatgac tttgctgatg atgaacacag cacatttgaa 1861 gacagcgaaa cgaggagaga ctcactgttt gagccgcaca gacatggaga gcgacgcaac 1921 agtaacggca ccaccacaga aacggaggtc agaaagagaa ggttaagttc ttaccagatt 1981 tcaatggaga tgctggagga ttcttctgga aggcaaagag ccgtgagcat agccagcatt 2041 ctgaccaaca caatggaaga acttgaagaa tctagacaga aatgtccgcc atgctggtat 2101 agatttgcca atgtgttctt gatctgggac tgctgtgatg catggttaaa agtaaaacat 2161 cttgtgaatt taattgttat ggatccattt gttgatcttg ccatcactat ttgcattgtc 2221 ttaaataccc tctttatggc catggagcac taccccatga ctgagcaatt cagtagtgtg 2281 ttgactgtag gaaacctggt ctttactggg attttcacag cagaaatggt tctcaagatc 2341 attgccatgg atccttatta ctatttccaa gaaggctgga atatctttga tggaattatt 2401 gtcagcctca gtttaatgga gcttggtctg tcaaatgtgg agggattgtc tgtactgcga 2461 tcattcagac tgcttagagt tttcaagttg gcaaaatcct ggcccacact aaatatgcta 2521 attaagatca ttggcaattc tgtgggggct ctaggaaacc tcaccttggt gttggccatc 2581 atcgtcttca tttttgctgt ggtcggcatg cagctctttg gtaagagcta caaagaatgt 2641 gtctgcaaga tcaatgatga ctgtacgctc ccacggtggc acatgaacga cttcttccac 2701 tccttcctga ttgtgttccg cgtgctgtgt ggagagtgga tagagaccat gtgggactgt 2761 atggaggtcg ctggccaaac catgtgcctt attgttttca tgttggtcat ggtcattgga 2821 aaccttgtgg ttctgaacct ctttctggcc ttattgttga gttcatttag ctcagacaac 2881 cttgctgcta ctgatgatga caatgaaatg aataatctgc agattgcagt aggaagaatg 2941 caaaagggaa ttgattatgt gaaaaataag atgcgggagt gtttccaaaa agcctttttt 3001 agaaagccaa aagttataga aatccatgaa ggcaataaga tagacagctg catgtccaat 3061 aatactggaa ttgaaataag caaagcgctt aattatctta gagatgggaa tggaaccacc 3121 agtggtgtag gtactggaag cagtgttgaa aaatacgtaa tcgatgaaaa tgattatatg 3181 tcattcataa acaaccccag cctcaccgtc acagtgccaa ttgctgttgg agagtctgac 3241 tttgaaaact taaatactga agagttcagc agtgagtcag aactagaaga aagcaaagag 3301 aaattaaatg caaccagctc atctgaagga agcacagttg atgttgttct accccgagaa 3361 ggtgaacaag ctgaaactga acccgaagaa gaccttaaac cggaagcttg ttttactgaa 3421 ggatgtatta aaaagtttcc attctgtcaa gtaagtacag aagaaggcaa agggaagatc 3481 tggtggaatc ttcgaaaaac ctgctacagt attgttgagc acaactggtt tgagactttc 3541 attgtgttca tgatccttct cagtagtggt gcattggcct ttgaagatat atacattgaa 3601 cagcgaaaga ctatcaaaac catgctagaa tatgctgaca aagtctttac ctatatattc 3661 attctggaaa tgcttctcaa atgggttgct tatggatttc aaacatattt cactaatgcc 3721 tggtgccggc tagatttctt gatcgttgat gtttctttgg ttagcctggt agccaatgct 3781 cttggctact cagaactcgg tgccatcaaa tcattacgga cattaagagc tttaagacct 3841 ctaagagcct tatcccggtt tgaaggcatg agggtggttg tgaatgctct tgttggagca 3901 attccctcta tcatgaatgt gctgttggtc tgtctcatct tctggttgat ctttagcatc 3961 atgggtgtga atttgtttgc tggcaagttc taccactgtg ttaacatgac aacgggtaac 4021 atgtttgaca ttagtgatgt taacaatttg agtgactgtc aggctcttgg caagcaagct 4081 cggtggaaaa acgtgaaagt aaactttgat aatgttggcg ctggctatct tgcactgctt 4141 caagtggtaa gtg //