LOCUS AF026547 6310 bp mRNA linear HUM 01-DEC-1998
DEFINITION Homo sapiens neurocan (CSPG3) mRNA, complete cds.
ACCESSION AF026547
VERSION AF026547.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6310)
AUTHORS Prange,C.K., Pennacchio,L.A., Lieuallen,K., Fan,W. and Lennon,G.G.
TITLE Characterization of the human neurocan gene, CSPG3
JOURNAL Gene 221 (2), 199-205 (1998)
PUBMED 9795216
REFERENCE 2 (bases 1 to 6310)
AUTHORS Lennon,G.G., Prange,C.K., Pennacchio,L.A., Lieuallen,K. and Fan,W.
TITLE Direct Submission
JOURNAL Submitted (24-SEP-1997) Human Genome Center, Lawrence Livermore
National Laboratory, 7000 East Avenue, Livermore, CA 94551, USA
FEATURES Location/Qualifiers
source 1..6310
/db_xref="H-InvDB:HIT000062827"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="19"
/map="19p12-13.1"
gene 1..6310
/gene="CSPG3"
CDS 2..3967
/gene="CSPG3"
/note="aggrecan proteoglycan family"
/codon_start=1
/product="neurocan"
/protein_id="AAC80576.1"
/translation="MGAPFVWALGLLMLQMLLFVAGEQGTQDITDASERGLHMQKLGS
GSVQAALAELVALPCLFTLQPRPSAARDAPRIKWTKVRTASGQRQDLPILVAKDNVVR
VAKSWQGRVSLPSYPRRRANATLLLGPLRASDSGLYRCQVVRGIEDEQDLVPLEVTGV
VFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLSDRTVRY
PITQSRPGCYGDRSSLPGVRSYGRRNPQELYDVYCFARELGGEVFYVGPARRLTLAGA
RAQCRRQGAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRT
VYRFANRTGFPSPAERFDAYCFRAHHPTSQHGDLETPSSGDEGEILSAEGPPVRELEP
TLEEEEVVTPDFQEPLVSSGEEETLILEEKQESQQTLSPTPGDPMLASWPTGEVWLST
VAPSPSDMGAGTAASSHTEVAPTDPMPRRRGRFKGLNGRYFQQQEPEPGLQGGMEASA
QPPTSEAAVNQMEPPLAMAVTEMLGSGQSRSPWADLTNEVDMPGAGSAGGKSSPEPWL
WPPTMVPPSISGHSRAPVLELEKAEGPSARPATPDLFWSPLEATVSAPSPAPWEAFPV
ATSPDLPMMAMLRGPKEWMLPHPTPISTEANRVEAHGEATATAPPSPAAETKVYSLPL
SLTPTGQGGEAMPTTPESPRADFRETGETSPAQVNKAEHSSSSPWPSVNRNVAVGFVP
TETATEPTGLRGIPGSESGVFDTAESPTSGLQATVDEVQDPWPSVYSKGLDASSPSAP
LGSPGVFLVPKVTPNLEPWVATDEGPTVNPMDSTVTPAPSDASGIWEPGSQVFEEAES
TTLSPQVALDTSIVTPLTTLEQGDKVGVPAMSTLGSSSSQPHPEPEDQVETQGTSGAS
VPPHQSSPLGKPAVPPGTPTAASVGESASVSSGEPTVPWDPSSTLLPVTLGIEDFELE
VLAGSPGVESFWEEVASGEEPALPGTPMNAGAEEVHSDPCENNPCLHGGTCNANGTMY
GCSCDQGFAGENCEIDIDDCLCSPCENGGTCIDEVNGFVCLCLPSYGGSFCEKDTEGC
DRGWHKFQGHCYRYFAHRRAWEDAEKDCRRRSGHLTSVHSPEEHSFINSFGHENTWIG
LNDRIVERDFQWTDNTGLQFENWRENQPDNFFAGGEDCVVMVAHESGRWNDVPCNYNL
PYVCKKGTVLCGPPPAVENASLIGARKAKNNVHATVRYQCNEGFAQHHVVTIRCRSNG
KWDRPQIVCTKPRRSHRMRGHHHHHQHHHQHHHHKSRKERRKHKKHPTEDWEKDEGNF
C"
3'UTR 3968..6286
/gene="CSPG3"
regulatory 6267..6272
/regulatory_class="polyA_signal_sequence"
/gene="CSPG3"
polyA_site 6286
/gene="CSPG3"
BASE COUNT 1441 a 1764 c 1734 g 1371 t
ORIGIN
1 gatgggggcc ccgtttgtct gggccttggg ccttttgatg ctgcagatgc tgctctttgt
61 ggctggggaa cagggcacac aggatatcac cgatgccagc gaaagggggc tccacatgca
121 gaagctgggg tctgggtcag tgcaggctgc gctggcggag ctggtggccc tgccctgtct
181 ctttaccctg cagccacggc caagcgcagc ccgagatgcc cctcggataa agtggaccaa
241 ggtgcggact gcgtcgggcc agcgacagga cttgcccatc ctggtggcca aggacaatgt
301 cgtgagggtg gccaaaagct ggcagggacg agtgtcactg ccttcctacc cccggcgccg
361 agccaacgcc acgctacttc tggggccact gagggccagt gactctgggc tgtaccgctg
421 ccaggtggtg aggggcatcg aggatgagca ggacctggtg cccttggagg tgacaggtgt
481 tgtgttccac taccgatcag cccgggaccg ctatgcactg accttcgctg aggcccagga
541 ggcctgccgt ctcagctcag ccatcattgc agcccctcgg catctacagg ctgcctttga
601 ggatggcttt gacaactgtg atgctggctg gctctctgac cgcactgttc ggtatcctat
661 cacccagtcc cgtcctggtt gctatggcga ccgtagcagc cttccagggg ttcggagcta
721 tgggaggcgc aacccacagg aactctacga tgtgtattgc tttgcccggg agctgggggg
781 cgaggtcttc tacgtgggcc cggcccgccg cctgacactg gccggcgcgc gtgcacagtg
841 ccgccgccag ggtgccgcgc tggcctcggt gggacagctg cacctggcct ggcatgaggg
901 cctggaccag tgcgacccgg gctggctggc cgacggcagc gtgcgctacc cgatccagac
961 gccgcgccgg cgctgcgggg gcccagcccc gggcgtgcgc accgtctacc gcttcgctaa
1021 ccggaccggc ttcccctcac ccgccgagcg cttcgacgcc tactgcttcc gagctcatca
1081 ccccacgtca caacatggag acctagagac cccatcctct ggggatgagg gggagattct
1141 gtcagcagag gggcccccag ttagagaact ggagcccacc ctggaggagg aagaggtggt
1201 cacccctgac ttccaggagc ctctggtgtc cagtggggaa gaagaaaccc tgattttgga
1261 ggagaagcag gagtctcaac agaccctcag ccctacccct ggggacccca tgctggcctc
1321 atggcccact ggggaagtgt ggctaagcac ggtggccccc agccctagcg acatgggggc
1381 aggcactgca gcaagttcac acacggaggt ggccccaact gaccctatgc ctaggagaag
1441 ggggcgcttc aaagggttga atgggcgcta cttccagcag caggaaccgg agccggggct
1501 gcaagggggg atggaggcca gcgcccagcc ccccacctca gaggctgcag tgaaccaaat
1561 ggagcctccg ttggccatgg cagtcacaga gatgttgggc agtggccaga gccggagccc
1621 ctgggctgat ctgaccaatg aggtggatat gcctggagct ggttctgctg gtggcaagag
1681 ctccccagag ccctggctgt ggccccctac catggtccca cccagcatct caggccacag
1741 cagggcccct gtcctggagc tagagaaagc cgagggcccc agtgccaggc cagccacccc
1801 agacctgttt tggtccccct tggaggccac tgtctcagct cccagccctg ccccctggga
1861 ggcattccct gtggccacct ccccagatct ccctatgatg gccatgctgc gtggtcccaa
1921 agagtggatg ctaccacacc ccacccccat ctccaccgag gccaatagag ttgaggcaca
1981 tggtgaggcc accgccacgg ctccaccctc ccctgctgca gagaccaagg tgtattccct
2041 gcctctctct ttgaccccaa caggacaggg tggagaggcc atgcccacaa cacctgagtc
2101 ccccagggca gacttcagag aaactgggga gaccagccct gctcaggtca acaaagctga
2161 gcactccagc tccagcccat ggccttctgt aaacaggaat gtggctgtag gttttgtccc
2221 cactgagact gccactgagc caacgggcct caggggtatc ccggggtctg agtctggggt
2281 cttcgacaca gcagaaagcc ccacttctgg cttgcaggcc actgtagatg aggtgcagga
2341 cccctggccc tcagtgtaca gcaaagggct ggatgcaagt tccccatctg cccccctggg
2401 gagccctgga gtcttcttgg tacccaaagt caccccaaat ttggagcctt gggttgctac
2461 agatgaagga cccactgtga atcccatgga ttccacagtc acgccggccc ccagtgatgc
2521 tagtggaatt tgggaacctg gatcccaggt gtttgaagaa gccgaaagca ccaccttgag
2581 ccctcaggtg gccctggata caagcattgt gacgcccctc acgaccctgg agcaggggga
2641 caaggttgga gttccagcca tgtctacact gggctcctca agctcccaac cccacccaga
2701 gccagaggat caggtggaga cccagggaac atcaggagct tcagtgcctc cgcatcagag
2761 cagtccccta gggaaaccgg ctgttcctcc tgggacaccg actgcagcca gtgtgggcga
2821 gtctgcctca gtttcctcag gggagcctac ggtaccgtgg gacccctcca gcaccctgct
2881 gcctgtcacc ctgggcatag aggacttcga actggaggtc ctggcaggga gcccgggtgt
2941 agagagcttc tgggaggagg tggcaagtgg agaggagcca gccctgccag ggacccctat
3001 gaatgcaggt gcggaggagg tgcactcaga tccctgtgag aacaaccctt gtcttcatgg
3061 agggacatgt aatgccaatg gcaccatgta tggctgtagc tgtgatcagg gcttcgccgg
3121 ggagaactgt gagattgaca ttgatgactg cctctgcagc ccctgtgaga atggaggcac
3181 ctgtattgat gaggtcaatg gctttgtctg cctttgcctc cccagctatg ggggcagctt
3241 ttgtgagaaa gacaccgagg gctgtgaccg cggctggcat aagttccagg gccactgtta
3301 ccgctatttt gcccaccgga gggcatggga agatgccgag aaggactgcc gccgccgctc
3361 cggccacctg accagcgtcc actcaccgga ggaacacagc ttcattaata gctttgggca
3421 tgaaaacacg tggatcggcc tgaacgacag gatcgtggag agagatttcc agtggacgga
3481 caacaccggg ctgcaatttg agaactggcg agagaaccag ccggacaatt tcttcgcggg
3541 tggcgaggac tgtgtggtga tggtggcgca tgaaagcggg cgctggaacg atgtcccctg
3601 caactacaac ctaccctatg tctgcaagaa gggcacagtg ctctgtggtc cccctccggc
3661 agtggagaat gcctcactca tcggtgcccg caaggccaag aacaatgtcc atgccactgt
3721 aaggtaccag tgcaatgaag gatttgccca gcaccatgtg gtcaccattc gatgccggag
3781 caatggcaag tgggacaggc cccaaattgt ctgcaccaaa cccagacgtt cacatcggat
3841 gcggggacac caccaccacc accaacacca ccaccagcat caccaccaca aatcccgcaa
3901 ggagcgcaga aaacacaaga aacacccaac ggaggactgg gagaaggacg aagggaattt
3961 ttgctgaaga accagaaaaa agaaagcaca acacctttcc catgcctcct ctggagcctt
4021 cgcctgggga gacagaaccc agagagaaac aagagagtcc agaagtccct gaaccccaaa
4081 ctgttctcgc aaaaaaaata ttcctttgaa caaaggtctt cttttccttt ttttacatac
4141 acaagatctt cttggcaggt ggagccaggt gtctgaaaag ttcattctcg tctggctgaa
4201 ctctgggagt gtgtcccagc tgagggaagc acaagtagca aagctcattg gtctggtctc
4261 ttgtttgcca ggctgattga agcaggcctt gatgagggtg catgagtgta tgtttgcatt
4321 cacatgaagg aattgctttt cacaccagaa attcagactt agtcaatgtt ggctgaattc
4381 ctaaatccag gaagaagcct ggacgtaggg tcattagctt tgggaataga aggctacaca
4441 gaagcacact gtttttgaac ttgacaacag ctctcccttt accctggact tcagcccaag
4501 ttccgtcttt ggtcttggtg gataaacaca cagtgtggag atcccacgta ctgcatttta
4561 gggatgtttt taggacaacc tccctccatg ccttcagagt taggagtgag aatgatcaaa
4621 gcaatatgta ggtgatggag ggagagtgta ttgctaaccc ttccaggtct agtccagcgc
4681 tgagatttgg tggttctgca tgtgtgatga atctctttca cacaaataga cgagaggata
4741 tttagggcta gatgagccca gatttcttcc ccctccatct ctcagggaga caaagaacct
4801 ccttcctgga ccaaggaggt gctgccaagt tttctagccc agtgcacata cccagtcctt
4861 aagcagacat tggtagtgcc cctgccctgg gtcccactcc tgccccaccc cacccttgtc
4921 cctggccatt gcctggtggt ctagaaacac ttaaaacttg aagtagtgac acctacctgc
4981 ggtcatattg tagagagatg ctcagtgtta aaactgaaac acacaaacac acacacacac
5041 acatttttct cttgtagatt ttaatttttt aagtgggaaa gaactcacct tgccttcctc
5101 ccccaaatgt gcaacctgta aaaggtctct ccacaccagg ggccaggatc cagttccctc
5161 atctctggca ggaaagatcc acagcttttc ctccatgtct gttactcact ttcagcagtc
5221 cgggtaaaat ctgtggatca gggttaaaaa agcaccgtgg agaatggccc tcttcaggaa
5281 agaaaaataa gcaaatgaat ggtccaccta ggggttcagt aaagaaagaa atgtgttaac
5341 tgagcctgaa tcccttctgg gaagtaataa tgaccattga caactaagaa gtagacacca
5401 tgctaaagac ttacatacaa tctccttgaa tcttctcaat agcccattga cttagaaact
5461 gttactttcc cattttacac acagtgaaac tgaggctcag atataaagga aaggtactgg
5521 cttgaagtca caaccacgac aggagtaagg atttggaata aggatttggt cctgttttct
5581 ggaccaaatc cttactctgg ctctgcttac actttctctc catcaccaaa tccttactcc
5641 aaatccagaa gtcagagcca actcccatct tggttctgac ccaaatcctg ctctggactc
5701 tggagaggag attgaaatat aattgcaccc tcatacacat ttaggaaatg gttaagaagt
5761 gtaaactgaa cccttatcct tgtcttcaat cttcctccct gtagacatct atcttattat
5821 ggttattatt cagaaaaccc agggatacag gtttgtcttc ttactttgat aactcttctt
5881 agtttaaaat aataataata acacatcttt ggtcatctat gtcacacaaa aattttcctt
5941 tgtttgcggg gggctgggga tgcagtgttt tttggggggt cttggtttat gctccctgcc
6001 cttgagcccc tcagccgttt gccctgcccc cacctcggct ccatggtggg agggggctct
6061 ggtcttttct aaagtgggcg gtttgtcttt tgatctttcc cttttggatg tgcgtgtgtg
6121 tctgcgtgtg ccatgtgcgt ggcacgcata tgagtgtgtg tgcgtgtgaa cggctttggg
6181 tcctgctggt tttgctgtga gctgcagtgt tctgtgggtc tgtggtatct gacactgtgg
6241 acattaatgt acttcttgga cattttaata aattttttaa cagttcaaaa aaaaaaaaaa
6301 aaaaaaaaaa
//