LOCUS AC133439 4006 bp DNA linear HUM 30-SEP-2002
DEFINITION Homo sapiens 3 BAC RP11-577M5 (Roswell Park Cancer Institute Human
BAC Library) complete sequence.
ACCESSION AC133439
VERSION AC133439.2
KEYWORDS HTG.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4006)
AUTHORS Muzny,D.M., Adams,C., Adio-Oduola,B., Ali-osman,F.R., Allen,C.,
Alsbrooks,S.L., Amaratunge,H.C., Are,J.R., Ayele,M., Banks,T.,
Barbaria,J., Benton,J., Bimage,K., Blankenburg,K., Bonnin,D.,
Bouck,J., Bowie,S., Brieva,M., Brown,E., Brown,M., Bryant,N.P.,
Buhay,C., Burch,P., Burkett,C., Burrell,K.L., Byrd,N.C.,
Carron,T.F., Carter,M., Cavazos,S.R., Chacko,J., Chavez,D.,
Chen,G., Chen,R., Chen,Z., Chowdhry,I., Christopoulos,C.,
Cleveland,C.D., Cox,C., Coyle,M.D., Dathorne,S.R., David,R.,
Davila,M.L., Davis,C., Davy-Carroll,L., Dederich,D.A.,
Delaney,K.R., Delgado,O., Denn,A.L., Ding,Y., Dinh,H.H.,
Douthwaite,K.J., Draper,H., Dugan-Rocha,S., Durbin,K.J.,
Earnhart,C., Edgar,D., Edwards,C.C., Elhaj,C., Escotto,M.,
Falls,T., Ferraguto,D., Flagg,N., Ford,J., Foster,P., Frantz,P.,
Gabisi,A., Gao,J., Garcia,A., Garner,T., Garza,N., Gill,R.,
Gorrell,J.H., Guevara,W., Gunaratne,P., Hale,S., Hamilton,K.,
Harris,C., Harris,K., Hart,M., Havlak,P., Hawes,A., He,X.,
Hernandez,J., Hernandez,O., Hodgson,A., Hogues,M., Holloway,C.,
Hollins,B., Homsi,F., Howard,S., Huber,J., Hulyk,S., Hume,J.,
Jackson,L.E., Jacobson,B., Jia,Y., Johnson,R., Jolivet,S.,
Joudah,S., Karlsson,E., Kelly,S., Khan,U., King,L., Korvah,J.,
Kovar,C., Kratovic,J., Kureshi,A., Landry,N., Leal,B., Lewis,L.C.,
Lewis,L., Li,J., Li,Z., Lichtarge,O., Lieu,C., Liu,J., Liu,W.,
Loulseged,H., Lozado,R.J., Lu,X., Lucier,A., Lucier,R., Luna,R.,
Ma,J., Maheshwari,M., Mapua,P., Martin,R., Martindale,A.,
Martinez,E., Massey,E., Mawhiney,E., McLeod,M.P., Meador,M.,
Mei,G., Metzker,M., Miner,G., Miner,Z., Mitchell,T., Mohabbat,K.,
Moore,S., Morgan,M., Moorish,T., Morris,S., Moser,M., Neal,D.,
Nelson,D., Newtson,J., Newtson,N., Nguyen,A., Nguyen,N., Nguyen,N.,
Nickerson,E., Nwokenkwo,S., Oguh,M., Okwuonu,G., Oragunye,N.,
Oviedo,R., Pace,A., Payton,B., Peery,J., Perez,L., Peters,L.,
Pickens,R., Primus,E., Pu,L.L., Quiles,M., Ren,Y., Rives,M.,
Rojas,A., Rojubokan,I., Rolfe,M., Ruiz,S., Savery,G., Scherer,S.,
Scott,G., Shen,H., Shooshtari,N., Sisson,I., Sodergren,E.,
Sonaike,T., Sparks,A., Stanley,H., Stone,H., Sutton,A., Svatek,A.,
Tabor,P., Tamerisa,A., Tamerisa,K., Tang,H., Tansey,J., Taylor,C.,
Taylor,T., Telfrod,B., Thomas,N., Thomas,S., Usmani,K., Vasquez,L.,
Vera,V., Villalon,D., Vinson,R., Wang,Q., Wang,S., Ward-Moore,S.,
Warren,R., Washington,C., Watlington,S., Williams,G.,
Williamson,A., Wleczyk,R., Wooden,S., Worley,K., Wu,C., Wu,Y.,
Wu,Y.F., Zhou,J., Zorrilla,S., Naylor,S.L., Weinstock,G. and
Gibbs,R.
TITLE Direct Submission
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4006)
AUTHORS Worley,K.C.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) Human Genome Sequencing Center, Department
of Molecular and Human Genetics, Baylor College of Medicine, One
Baylor Plaza, Houston, TX 77030, USA
REFERENCE 3 (bases 1 to 4006)
AUTHORS Worley,K.C.
TITLE Direct Submission
JOURNAL Submitted (30-SEP-2002) Human Genome Sequencing Center, Department
of Molecular and Human Genetics, Baylor College of Medicine, One
Baylor Plaza, Houston, TX 77030, USA
COMMENT On Sep 30, 2002 this sequence version replaced AC133439.1.
INFORMATION: http://www.hgsc.bcm.tmc.edu/ or email
gc-help@bcm.tmc.edu
CLONE LENGTH: This sequence does not necessarily represent the
entire insert of this clone. Overlapping regions of clones are only
sequenced and submitted once, so the sequence for the remainder of
the insert may be found in the record for the adjacent clones.
Overlapping clones are noted at the beginning and end of the
Features listing.
ANNOTATION OF FEATURES:
STSs are identified using ePCR (Genome Res. 7:541-550) searches
of a local database that includes entries from dbSTS, GDB, and
local mapping efforts.
Repeats are identified using RepeatMasker (A. Smit and P. Green,
unpublished.) for Human and Mouse sequences.
Genes and Region of sequence similarity are identified by BLAST
(Nuc. Acids Res. 25:3389-3402) similarity (expect < 1e-34) to the
EST and cDNA sequences. Genes demonstrate at least two exons
flanked by consensus splice sites that maintained sequence
continuity across the splice junctions. Sequences that are not
identical matches are annotated as similar.
SEQUENCING READ COVERAGE:Sequencing is completed to a minimum
standard of double strand coverage with a minimum of 2 clones and 2
reads with no ambiguities or 2 chemistries with a minimum of 2
clones and 3 reads with no ambiguities. If the sequence quality for
a region does not meet this standard, it will be indicated in the
annotation as Low Coverage.
QUALITY OF INDIVIDUAL BASES:This sequence meets stringent quality
standards - estimated error rate less than 1 per 10,000 bases.
Reports of lowest quality individual bases and measures of base
quality are listed below. Description of the metrics can be found
at URL:
http://www.hgsc.bcm.tmc.edu:8088/quality.info/genbank.annotation.ht
ml.
FEATURES Location/Qualifiers
source 1..4006
/db_xref="H-InvDB:HIT000383791"
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
/chromosome="3"
/clone="RP11-577M5"
misc_feature complement(1..2021)
/note="overlaps bases 1..2022 of clone AC024892"
/function="clone overlap"
repeat_region complement(631..934)
/rpt_family="L1MB5"
repeat_region complement(1110..1257)
/rpt_family="L1M4"
repeat_region 1273..1567
/rpt_family="AluY"
repeat_region 1807..2292
/rpt_family="MER34"
misc_feature complement(2002..4006)
/note="overlaps bases 181591..183595 of clone AC117460"
/function="clone overlap"
BASE COUNT 1234 a 707 c 658 g 1407 t
ORIGIN
1 aaggaacaaa ggagattata tggtcatttc aaaatatttg ggaaattcta ctctgggtat
61 tttttcagag atagtttata accaagtcat agaagaaaat caatcttatt acttcatgaa
121 aatatcagat actatattca taatagcaat agaacctatg aagcccttat gagtaaaatt
181 taataagaaa agtgttgaaa gtgtatgaaa aaactatgaa aacaactata cgtggatcta
241 tcttacataa tttccagata tttttgacta tttcaaaaaa tcattcctgc tctcaatagt
301 tgtctattac caaatattta aatgcaaatt atcatgaaac ataaaagatc attaatagat
361 attttctaag aaaaatttac aggttattta ttactaattt tacattagaa ctatcaatgc
421 caaatattcc ttactaaagg taaaaatagc attttattat tcttatttct attaacatgc
481 aggtaatcat cattttgtac acatttaccc caaaacattt gggaagctct acgctggaaa
541 ttctttcaaa gatagtttat aagttataga aaaaaattaa tctttatcta tgttcatatc
601 atatttatat ttatacgcaa aaaattaaaa atataaatgg aactatgtaa tttacatttc
661 tttctatttt gattttttta cttaataatg cattgagaaa atgctccgat ttttaacagg
721 tacagctcaa atccattttc tttatatctg aagactattc cacagtcaga ctgtaccata
781 atttattcag tcattctata attgatgagt attctttttg tttcctggct ttgtcttcat
841 gaacaatgct ttattaggta tccttgtgtt tcacgtttgt atctgggtga caatatttct
901 agaatatata tccagaagtg agattgttag atcaaagata tataaattac taattttgat
961 agatgtcagc tttgaaaggc agttaaaatt tatgtcagtt attttagatt gcaactcttt
1021 ttcacctttc tatcatcagt agatattatt tctcatttta cttttttgtt tatttgacaa
1081 atgaaaacga tgcgacaatt taaaaaatat ccttaattat taaggaggtt gaacattgtt
1141 tcatatattt atcggttttt ttttacatat ttattaatca tggtaaacat atctgttcat
1201 atttttcact catttttttc attaggttgt ctacttgttc ctgccaagtt gtaagagagt
1261 atatgtgttg tgggccgggc gcggtggctc acgcctgtaa tcctagcact ttgggaggcc
1321 gaggcggacg gatcatgagg tcaggagatc gagaccacgg tgaaaccccg tctctactaa
1381 aaatacaaaa agttagccgg gcgtagtggc gggcgcctgt agtcccagct actcgggagg
1441 ctgaggcagg agaatggcgt gaacccggga ggcggagctt gcagtgagcc gagatggcgc
1501 ccctgcactc cagcctgggt gacagagcga gactccgtct caaaaaaaaa aaaaaaaaaa
1561 aagagaatat atgtgttgtg tatatatttt tataagtatt aatgcaaatt atgttacaga
1621 tatttttcca acatgttttg tcctttccca ttttttatga attcttttgt catgccataa
1681 aaattaggta gctatgccta tattcaatga ttagcctaat tctctttctc atgcaatggt
1741 tttggatttg catctttttc cattgcaatg gtcttccaca tggttttatt gcctctggag
1801 ggtggtagaa tatgccacac caaaatatgc cactttggca gatggattat tttgagctaa
1861 aggtacataa agaaacagca gatggaagaa gggcattcta atttcacctc ttcttcctca
1921 aaacaagtgg ttaaaaactc ccatgtaaaa gatgccctcc ctgtaccaga agaaatgaaa
1981 cattattttc attttttaat gaattctatc caagagaatt ctatacaaac aacgcttgtt
2041 aaaataattc taatcttcct tttacctccc tgcataattt agctgctttt ccacaattgc
2101 ttttctttgt tcaacctagt atgaaagcct ttaggttttg ccacatgttc aggtcttcat
2161 ttacttatga ggacttttat gttatgtaaa acttttatac atttgtatgc ttttctcttc
2221 tgaatctggc ttatgtccat ctgattctca ggccaactaa gagagtagag gcaaaatttt
2281 gcctccccta cacctcaaat atatgcattc atttcagtat tttccaattt tagtgtcaaa
2341 tacctaaaca cacactttgt aaacagattt tactaatgga tgtaagttag actttaaaaa
2401 ctgttaatta aatgggaaac tcaaaggtat aaatataata aaatgctacc gctttgtgtt
2461 atctttagtg attgtctttg taacatgttt tcttattaca gtgacgagta tggatatatc
2521 agagggaaat aagactcttg tgacagagtt tgttctcaca ggacttacag atcgaccatg
2581 gctgcacgtc ctcttctttg ttgtgttttt ggtggtctat ctcatcacca tggtgggcaa
2641 ccttggactg atagttctaa tttggaacga cccccatctt catatgccca tgtacttatt
2701 ccttggtggt ttagcctttt cagatgcttg tacttcaacc tctataaccc ctaggatgct
2761 ggtcaatttc ttagacaaga ctgcaatgat atccctagct gagtgcatca cccagtttta
2821 cttttttgct tccagtgcaa ctacagaatg cttcctcctg gtgatgatgg cctatgaccg
2881 ctatgtagcc atatgtaatc ccttgcttta tccagtgatg atgtccaaca aactcagcgc
2941 tcagttgcta agtatttcat atgtaattgg tttcctgcat cctctggttc atgtgagttt
3001 actattgcga ctaactttct gcaggtttaa cataatacat tatttctact gtgaaatttt
3061 acaactgttc aaaatttcat gcaatggtcc atctattaac gcactaatga tatttatttt
3121 tggtgctttt atacaaatac ccactttaat gactatcata atctcttata ctcgtgtgct
3181 ctttgatatt ctgaaaaaaa agtctgaaaa gggcagaagc aaagccttct ccacatgcgg
3241 cgcccatctg ctttctgtct cattgtacta cggaactctg atcttcatgt atgtgcgtcc
3301 tgcatctggc ttagctgaag accaagacaa agtgtattct ctgttttaca cgattataat
3361 tcccctgcta aacccattta tttacagctt gagaaataaa aaagtcatgc atgcattgag
3421 aagagttata aggaagtaaa cagttccaaa gggaaatgtc aaatcattta ttttttcacc
3481 ctttgcataa ataagtcaac aagtcttgtg gttagccatg gctctgccat ttcatcagag
3541 ggctagtggt cagggtggtc actgagcact acgtgaagaa acccagcttt gtacaatgtt
3601 tacttggatt tgggtccagt tgaagtgtct ttacatcaac catggttgat ttctttaaaa
3661 acattttact tccttgtttt ctgaacattt aatcttgaaa atttattatt ttccagggac
3721 cctacatcta aattccattg aataaccgac aataattgaa actgttatat aagagccatt
3781 tagttcacaa acctagttta ctgcactagg ctctgtgata ccctaccata caagaataaa
3841 atgataaaaa ctcagagtct tgcagaaaaa gtgttctaga aataaaagtg agaaatagta
3901 ataaaaatta agagtttaaa aaatggtgta ttttttaatt tttaatttct ggtatatctt
3961 aatgacaaaa atttttaaaa gcttgtcttg aacaatggac catcaa
//