LOCUS AB593155 5434 bp mRNA linear HUM 24-AUG-2011
DEFINITION Homo sapiens CDHR1 mRNA for cadherin-related family member 1,
complete cds, clone: HP09128-RBdS132J21.
ACCESSION AB593155
VERSION AB593155.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5434)
AUTHORS Kato,S.
TITLE Direct Submission
JOURNAL Submitted (05-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Seishi Kato
National Rehabilitation Center for Persons with Disabilities,
Research Institute, Department of Rehabilitation Engineering; 4-1
Namiki, Tokorozawa, Saitama 359-8555, Japan
URL :http://www.rehab.go.jp/
REFERENCE 2
AUTHORS Oshikawa,M., Tsutsui,C., Ikegami,T., Fuchida,Y., Matsubara,M.,
Toyama,S., Usami,R., Ohtoko,K. and Kato,S.
TITLE Full-Length Transcriptome Analysis of Human Retina-Derived Cell
Lines ARPE-19 and Y79 Using the Vector-Capping Method
JOURNAL Invest. Ophthalmol. Vis. Sci. 52, 6662-6670 (2011)
COMMENT For cDNA clones and library availability, please contact
RIKEN BioResource Center.
E-mail: dnabank@brc.riken.jp
URL:http://dna.brc.riken.jp/
FEATURES Location/Qualifiers
source 1..5434
/cell_line="Y79"
/cell_type="retinoblastoma"
/clone="HP09128-RBdS132J21"
/clone_lib="pGCAP10/Y79 cDNA"
/db_xref="H-InvDB:HIT000563956"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="The library was prepared by Vector-capping method."
/organism="Homo sapiens"
CDS 113..2692
/codon_start=1
/gene="CDHR1"
/product="cadherin-related family member 1"
/protein_id="BAJ84087.1"
/transl_table=1
/translation="MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSL
PEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDRERED
EIEAIISISDGLNLVAEKVVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAV
DRDTGSGGSVTYFLQNLHSPFAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGR
LHGADVVFSATTTVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRG
KPNRILYSLVNGNDGAFEINETSGAISITQSPAQLQREVYELHVQVTEMSPAGSPAAQ
ATVPVTIRIVDLNNHPPTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGAN
AKFNLQLVGPRGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKVLTFKLLAVEVNTPE
KFSSTADVVIQLLDTNDNVPKFDSLYYVARIPENAPGGSSVVAVTAVDPDTGPWGEVK
YSTYGTGADLFLIHPSTGLIYTQPWASLDAEATARYNFYVKAEDMEGKYSVAEVFITL
LDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDAEEPNNLVDYSITHAEPANVFDINS
HTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKDRGSPSFSTTALLKIDITDAETL
SRSPMAAFLIQTKDNPMKAVGVLAGTMATVVAITVLISTATFWRNKKSNKVLPMRRVL
RKRPSPAPRTIRIEWLKSKSTKAATKFMLKEKPPNENCNNNSPESSLLPRAPALPPPP
SVAPSTGAAQWTVPTVSGSLTPQPTQPPPKPKTMGSPVQSTLISELKQKFEKKSVHNK
AYF"
BASE COUNT 1306 a 1549 c 1442 g 1137 t
ORIGIN
1 agtcgccgct acccccattg tggtctctgc cctccccgcg ggcccagggc atgctccgtg
61 cccctgcgcc cggtctcggc ggcggcaggc gacactccgc gccggcggag acatgaggcg
121 ctgccggtgg gccgccctgg ccctggggct gctgcgcctc tgcttggctc aggccaactt
181 cgccccgcac ttcttcgaca acggggtcgg cagcaccaac ggaaacatgg ctctgttcag
241 cctcccagag gacacccctg taggctctca cgtatacacc ctgaatggga cagaccctga
301 gggagacccc atctcctacc acatcagctt tgaccccagc actagaagcg tcttttctgt
361 tgaccccact tttggaaaca tcaccctggt tgaagagctg gacagagaga gggaagatga
421 gattgaagcc atcatcagca tttctgatgg cctgaatctg gtggccgaaa aagtcgtgat
481 cctggtgacc gatgccaatg atgaggcgcc caggttcatc caggagcctt atgttgccct
541 ggttcccgag gacatacctg ctgggagcat catctttaag gtccatgcag tggacaggga
601 cacaggctct ggagggagtg tcacctactt cctgcagaac ctgcactccc catttgccgt
661 ggaccgccac agcggtgtgc tgcgcctcca ggctggggcc actctggact acgagaggtc
721 ccggacccac tacatcaccg tggtcgccaa ggatggcggt gggaggcttc atggggctga
781 tgtggtgttc tcagccacca ccacggtcac ggtcaatgtg gaggatgttc aggacatggc
841 ccctgtcttc gtgggcacac cctactatgg ctatgtgtac gaggacaccc ttccgggctc
901 ggaggtactg aaggtggtcg ccatggatgg agaccggggc aaacccaatc gaattctcta
961 cagccttgta aatgggaacg atggagcctt tgaaattaat gagacatctg gagccatctc
1021 catcactcag agcccggccc agctccagag agaggtgtat gagctgcatg tacaggtgac
1081 tgaaatgagc cctgcgggga gcccagctgc ccaggccacc gtcccagtca ccatcaggat
1141 tgtggacctc aacaaccacc cgccaacatt ctatggagag agcggacccc aaaacaggtt
1201 tgagctgtcc atgaatgagc acccacccca gggagagatc ctgcggggcc tcaagatcac
1261 cgtcaatgac tccgaccagg gagccaatgc caaattcaac ttgcagctgg tgggacccag
1321 gggcatcttc cgagtggttc cacagacagt cctgaatgaa gcccaagtca caatcattgt
1381 ggagaactca gctgccattg actttgaaaa gtccaaagta ttaaccttca agctcctggc
1441 tgttgaagtg aacaccccag agaagttcag ttccacagcg gatgttgtga tccagctcct
1501 ggacaccaat gacaatgtcc ccaagttcga ctccctctac tacgttgcca ggattcctga
1561 gaacgcccca gggggctcca gcgtggtggc tgtcacagct gtggatccag atacaggacc
1621 ctggggcgaa gtgaaatatt ccacctatgg gactggggca gacctcttcc tgatccaccc
1681 atccactggg cttatctaca cccagccctg ggctagcctg gacgctgagg ccactgccag
1741 gtacaacttc tatgtgaagg cagaggacat ggaaggcaag tacagcgtag ctgaggtgtt
1801 tatcacactg ctggatgtca atgaccaccc ccctcagttt ggaaagagcg ttcagaagaa
1861 gacgatggtg ctagggaccc cagtgaaaat tgaggccata gacgaggatg cagaggaacc
1921 caacaacctg gtggactatt ccatcaccca tgcagagccc gccaacgtgt tcgacatcaa
1981 ttcccacacg ggggagatct ggctcaagaa ttccatccgc tccctggatg ccctgcacaa
2041 catcacacct ggaagggact gcctatggtc cctagaggtg caggccaagg accggggctc
2101 cccatccttc agcaccacag ccttactcaa gattgacatc acagatgctg agaccctctc
2161 ccggagcccc atggctgcct tcctgataca gaccaaggac aaccccatga aggccgtggg
2221 tgtgctggcc ggcaccatgg ccaccgtcgt ggccatcact gtcctcatct ccaccgccac
2281 cttctggcgc aacaagaagt ctaacaaggt cctgccaatg cggcgggtgc tccgcaagcg
2341 gcccagccct gcgccccgca ccatccgcat tgagtggctc aagtccaaga gcaccaaagc
2401 cgctaccaag ttcatgctca aagagaaacc tcccaatgag aactgtaaca acaacagccc
2461 agaaagctct ctgctcccga gagctccggc tctccctcca ccacccagcg tggcgcccag
2521 cactggcgca gcccagtgga ccgtgcctac tgtctctggc tctctcactc cgcagccgac
2581 ccaacccccg ccaaaaccca aaactatggg aagccccgtc cagtcaactc tgatctctga
2641 gctcaagcaa aagtttgaga agaagagtgt gcacaacaag gcttacttct agtgtatgcc
2701 ctatgacccc ccatctttcc tccgcccctg acccccacca ccctgctgct cggactatgc
2761 tccccttcct ctgctcctta aggtcactga cccctgtttt gcacaatggt ataatcccca
2821 ctgtcctcat ctctaccgcc accttctggc gcaacaagaa gttgcgctct gacagggctc
2881 tagtcagggc cttgggcaag acattgggct ctaggatgca attggcaaat acgtccccgt
2941 tactcaaatc cttggcacta ctacaatgcc ctccattctt cagggctgag aattgacgag
3001 aagccagctc acccatccca gacctcacag tccctcaggt tctactggga tctcatcatc
3061 atccttagtc aagcagcagg gccctggcca cgtggagcaa cactgactag aatctggatc
3121 ctgacgcctg cagctgagag caggagcagg aaaaggaggc tcagcactgt ctcaggctgg
3181 aggtcagcga acctcgtggg ctgtaggaaa gcaaatgtag gtaaggggag agcaaggatg
3241 cacagaaaac acactgactg tgggactgtg ccaggatgca tttggaaaga tagagcattc
3301 tgtctgggca gagactgtgg accctggtat gcccacgtgg gacagaggac acagaggtgg
3361 aagattgatc ttgccaagag tgagggcaga tgtctccagc caggactgcc ctgagccgca
3421 aaatgtcaaa gctggagcta tagaggtagc cctaaaggca actagaagag catcagggct
3481 gctctctgag gagctgcccc accagccatc cttgaagaga caattcaggg cagttgatga
3541 atatcagggc tgagatgtgg tgagacttcc gtttttatcc agctcttttg ctcacatcgc
3601 gtaaccttgg gaaagctgtt taaagtcgct gatcatcctc ttcctcatct gtaaatgaag
3661 aaagtaggcc ctgtctacct cacatgcagg tctagggtga ggattgaaga aaatagtggt
3721 gatgagggct ttaaccaagt gcaaagcggc atgaatgcaa agtatttttc tgcagcccag
3781 ttctgtgggt gcagctcttc cagaaagtat taggagcctc acatctactc tgccaagcgc
3841 cccagcaggc actgtgctgg gcttaggggc taccactgga tgatggcatt gccgtgactc
3901 acacacctct acttctgttc ttccctcact ccatccccgc taccgtcctg gccagctacc
3961 gtcagagaga accagagctc caagtcttta atttgccaag atgaagaaaa tgagttctca
4021 aggagggaat gctttgcttg aggccacaca gcaggttggt agcaaagatc ttgtctagcc
4081 agggcagccc ttatcagctt gtgacaacct tccccaggac agaagtcata caaggcctct
4141 ggggttaata caaataggtt gtgccctgct ttaaggaacc tgctatcagg aaatctacat
4201 gtgtgcacag agagagaaaa gtagaacagt tctttgcatt tggctctact tactaacaac
4261 ccctctagaa tacattggtg atttcattta aagagattgt atgcatttgt ggctttcctg
4321 atttctgagt ctgtgtttgg aggtgttact gagatgtgcc agtgtgcaga atccttgctg
4381 gggtttctac agtccccaac gtgaacagta ttaagcaaga ggtggactcg agcaatccag
4441 gagcccagac tgagcaaata agtactttcc agcctgtgtt tcaggagagg actgtgctgg
4501 atcatgcttg ccctccacag ggaatacagc atccttacag cttgcatgca atcaacctct
4561 tttgtaaatg gaaaataaag tctgttaccc aaaggccatg ctgatcccct gctccctgct
4621 ttcatttatg tttgctgacc tgtggagacc agtctttctg acacacagtg aagctcaact
4681 tgcctcctgg ctgcttcagc aggtggatcc attcttcgac ccccagatgt gactctaaag
4741 aaggctgaaa atttttgtcc aaattgccat gcagatatct tgaacagcag gacatttgca
4801 ggccttgtct actggacttt tctcccaaac aggacaagcc caggcagggc tgcatggaga
4861 ggaatggaac ctggagctag aattaattgc ccactctccc accctaccag tgcagcccgg
4921 caagggcagg aattgggagg cctagggtgg gcatgaaagc ttgggaagca ctgtcgtctc
4981 tcagacaggc gtcctaaaga cctctaggct ggaagcttgg gcttgcaagt ggatccggga
5041 ccgagggtgg tctcttggac aaccccagga acttggacca aggcagagcc aatcttgcaa
5101 actggccatg gatggggaag tgcccggtag ccagcatgag ccacactagg aaagaggagg
5161 agggtgcagc caaacttaag gcaccggcaa gtgttgtcag cactggagga gaccccgcca
5221 gtggggtgag gccagccaag tccctgtgtt acgaatggtg ggccaagggg ctgtctgcta
5281 ggtcccagta ggacaggcag agctccaggc tggcaccatg gtaggcctcc agggaaagag
5341 ctgggaggca ggaatggcac actgggcagg cttgcccatt cctggccctg agaatggagc
5401 tgtagcctca tggacaataa atggatgtga cacc
//