LOCUS AB593154 3720 bp mRNA linear HUM 24-AUG-2011
DEFINITION Homo sapiens CDHR1 mRNA for cadherin-related family member 1,
complete cds, clone: HP09128-RBdS105C07.
ACCESSION AB593154
VERSION AB593154.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3720)
AUTHORS Kato,S.
TITLE Direct Submission
JOURNAL Submitted (05-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Seishi Kato
National Rehabilitation Center for Persons with Disabilities,
Research Institute, Department of Rehabilitation Engineering; 4-1
Namiki, Tokorozawa, Saitama 359-8555, Japan
URL :http://www.rehab.go.jp/
REFERENCE 2
AUTHORS Oshikawa,M., Tsutsui,C., Ikegami,T., Fuchida,Y., Matsubara,M.,
Toyama,S., Usami,R., Ohtoko,K. and Kato,S.
TITLE Full-Length Transcriptome Analysis of Human Retina-Derived Cell
Lines ARPE-19 and Y79 Using the Vector-Capping Method
JOURNAL Invest. Ophthalmol. Vis. Sci. 52, 6662-6670 (2011)
COMMENT For cDNA clones and library availability, please contact
RIKEN BioResource Center.
E-mail: dnabank@brc.riken.jp
URL:http://dna.brc.riken.jp/
FEATURES Location/Qualifiers
source 1..3720
/cell_line="Y79"
/cell_type="retinoblastoma"
/clone="HP09128-RBdS105C07"
/clone_lib="pGCAP10/Y79 cDNA"
/db_xref="H-InvDB:HIT000563955"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="The library was prepared by Vector-capping method."
/organism="Homo sapiens"
CDS 127..2706
/codon_start=1
/gene="CDHR1"
/product="cadherin-related family member 1"
/protein_id="BAJ84086.1"
/transl_table=1
/translation="MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSL
PEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDRERED
EIEAIISISDGLNLVAEKVVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAV
DRDTGSGGSVTYFLQNLHSPFAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGR
LHGADVVFSATTTVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRG
KPNRILYSLVNGNDGAFEINETSGAISITQSPAQLQREVYELHVQVTEMSPAGSPAAQ
ATVPVTIRIVDLNNHPPTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGAN
AKFNLQLVGPRGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKVLTFKLLAVEVNTPE
KFSSTADVVIQLLDTNDNVPKFDSLYYVARIPENAPGGSSVVAVTAVDPDTGPWGEVK
YSTYGTGADLFLIHPSTGLIYTQPWASLDAEATARYNFYVKAEDMEGKYSVAEVFITL
LDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDAEEPNNLVDYSITHAEPANVFDINS
HTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKDRGSPSFSTTALLKIDITDAETL
SRSPMAAFLIQTKDNPMKAVGVLAGTMATVVAITVLISTATFWRNKKSNKVLPMRRVL
RKRPSPAPRTIRIEWLKSKSTKAATKFMLKEKPPNENCNNNSPESSLLPRAPALPPPP
SVAPSTGAAQWTVPTVSGSLTPQPTQPPPKPKTMGSPVQSTLISELKQKFEKKSVHNK
AYF"
BASE COUNT 869 a 1130 c 983 g 738 t
ORIGIN
1 cccgccgcgg ctgcagtcgc cgctaccccc attgtggtct ctgccctccc cgcgggccca
61 gggcatgctc cgtgcccctg cgcccggtct cggcggcggc aggcgacact ccgcgccggc
121 ggagacatga ggcgctgccg gtgggccgcc ctggccctgg ggctgctgcg cctctgcttg
181 gctcaggcca acttcgcccc gcacttcttc gacaacgggg tcggcagcac caacggaaac
241 atggctctgt tcagcctccc agaggacacc cctgtaggct ctcacgtata caccctgaat
301 gggacagacc ctgagggaga ccccatctcc taccacatca gctttgaccc cagcactaga
361 agcgtctttt ctgttgaccc cacttttgga aacatcaccc tggttgaaga gctggacaga
421 gagagggaag atgagattga agccatcatc agcatttctg atggcctgaa tctggtggcc
481 gaaaaagtcg tgatcctggt gaccgatgcc aatgatgagg cgcccaggtt catccaggag
541 ccttatgttg ccctggttcc cgaggacata cctgctggga gcatcatctt taaggtccat
601 gcagtggaca gggacacagg ctctggaggg agtgtcacct acttcctgca gaacctgcac
661 tccccatttg ccgtggaccg ccacagcggt gtgctgcgcc tccaggctgg ggccactctg
721 gactacgaga ggtcccggac ccactacatc accgtggtcg ccaaggatgg cggtgggagg
781 cttcatgggg ctgatgtggt gttctcagcc accaccacgg tcacggtcaa tgtggaggat
841 gttcaggaca tggcccctgt cttcgtgggc acaccctact atggctatgt gtacgaggac
901 acccttccgg gctcggaggt actgaaggtg gtcgccatgg atggagaccg gggcaaaccc
961 aatcgaattc tctacagcct tgtaaatggg aacgatggag cctttgaaat taatgagaca
1021 tctggagcca tctccatcac tcagagcccg gcccagctcc agagagaggt gtatgagctg
1081 catgtacagg tgactgaaat gagccctgcg gggagcccag ctgcccaggc caccgtccca
1141 gtcaccatca ggattgtgga cctcaacaac cacccgccaa cattctatgg agagagcgga
1201 ccccaaaaca ggtttgagct gtccatgaat gagcacccac cccagggaga gatcctgcgg
1261 ggcctcaaga tcaccgtcaa tgactccgac cagggagcca atgccaaatt caacttgcag
1321 ctggtgggac ccaggggcat cttccgagtg gttccacaga cagtcctgaa tgaagcccaa
1381 gtcacaatca ttgtggagaa ctcagctgcc attgactttg aaaagtccaa agtattaacc
1441 ttcaagctcc tggctgttga agtgaacacc ccagagaagt tcagttccac agcggatgtt
1501 gtgatccagc tcctggacac caatgacaat gtccccaagt tcgactccct ctactacgtt
1561 gccaggattc ctgagaacgc cccagggggc tccagcgtgg tggctgtcac agctgtggat
1621 ccagatacag gaccctgggg cgaagtgaaa tattccacct atgggactgg ggcagacctc
1681 ttcctgatcc acccatccac tgggcttatc tacacccagc cctgggctag cctggacgct
1741 gaggccactg ccaggtacaa cttctatgtg aaggcagagg acatggaagg caagtacagc
1801 gtagctgagg tgtttatcac actgctggat gtcaatgacc acccccctca gtttggaaag
1861 agcgttcaga agaagacgat ggtgctaggg accccagtga aaattgaggc catagacgag
1921 gatgcagagg aacccaacaa cctggtggac tattccatca cccatgcaga gcccgccaac
1981 gtgttcgaca tcaattccca cacgggggag atctggctca agaattccat ccgctccctg
2041 gatgccctgc acaacatcac acctggaagg gactgcctat ggtccctaga ggtgcaggcc
2101 aaggaccggg gctccccatc cttcagcacc acagccttac tcaagattga catcacagat
2161 gctgagaccc tctcccggag ccccatggct gccttcctga tacagaccaa ggacaacccc
2221 atgaaggccg tgggtgtgct ggccggcacc atggccaccg tcgtggccat cactgtcctc
2281 atctccaccg ccaccttctg gcgcaacaag aagtctaaca aggtcctgcc aatgcggcgg
2341 gtgctccgca agcggcccag ccctgcgccc cgcaccatcc gcattgagtg gctcaagtcc
2401 aagagcacca aagccgctac caagttcatg ctcaaagaga aacctcccaa tgagaactgt
2461 aacaacaaca gcccagaaag ctctctgctc ccgagagctc cggctctccc tccaccaccc
2521 agcgtggcgc ccagcactgg cgcagcccag tggaccgtgc ctactgtctc tggctctctc
2581 actccgcagc cgacccaacc cccgccaaaa cccaaaacta tgggaagccc cgtccagtca
2641 actctgatct ctgagctcaa gcaaaagttt gagaagaaga gtgtgcacaa caaggcttac
2701 ttctagtgtg tgccctatga ccccccatct ttcctccgcc cctgaccccc accaccctgc
2761 tgctcggact atgctcccct tcctctgctc cttaaggtca ctgacccctg ttttgcacaa
2821 tggtataatc cccactgtct tcatctctac cgccaccttc tggcgcaaca agaagttgcg
2881 ctctgacagg gctctagtca gggccttggg caagacattg ggctctagga tgcaattggc
2941 aaatacgtcc ccgttactca aatccttggc actactacaa tgccctccat tcttcagggc
3001 tgagaattga cgagaagcca gctcacccat cccagacctc acagtccctc aggttctact
3061 gggatctcat catcatcctt agtcaagcag cagggccctg gccacgtgga gcaacactga
3121 ctagaatctg gatcctgacg cctgcagctg agagcaggag caggaaaagg aggctcagca
3181 ctgtctcagg ctggaggtca gcgaacctcg tgggctgtag gaaagcaaat gtaggtaagg
3241 ggagagcaag gatgcacaga aaacacactg actgtgggac tgtgccagga tgcatttgga
3301 aagatagagc attctgtctg ggcagagact gtggaccctg gtatgcccac gtgggacaga
3361 ggacacagag gtggaagatt gatcttgcca agagtgaggg cagatgtctc cagccaggac
3421 tgccctgagc cgcaaaatgt caaagctgga gctatagagg tagccctaaa ggcaactaga
3481 agagcatcag ggctgctctc tgaggagctg ccccaccagc catccttgaa gagacaattc
3541 agggcagttg atgaatatca gggctgagat gtggtgagac ttccgttttt atccagctct
3601 tttgctcaca tcgcgtaacc ttgggaaagc tgtttaaagt cgctgatcat cctcttcctc
3661 atctgtaaat gaagaaagta ggccctgtct acctcacatg caggtctagg gtgaggattg
//