LOCUS AB211400 6821 bp mRNA linear HUM 23-FEB-2006 DEFINITION Homo sapiens PTPRD mRNA for protein tyrosine phosphatase receptor type D, complete cds. ACCESSION AB211400 VERSION AB211400.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6821) AUTHORS Kohno,T., Sato,M. and Yokota,J. TITLE Direct Submission JOURNAL Submitted (16-APR-2005) to the DDBJ/EMBL/GenBank databases. Contact:Takashi Kohno Natl Cancer Ctr Res Inst, Biology Division; 1-1, Tsukiji 5-chome, Chuo-ku, Tokyo 104-0045, Japan REFERENCE 2 AUTHORS Sato,M., Kohno,T. and Yokota,J. TITLE Identification of Chromosome Arm 9p as the Most Frequent Target of Homozygous Deletions in Lung Cancer JOURNAL Unpublished (2005) COMMENT FEATURES Location/Qualifiers source 1..6821 /chromosome="9" /db_xref="H-InvDB:HIT000329928" /db_xref="taxon:9606" /map="9p23" /mol_type="mRNA" /organism="Homo sapiens" CDS 712..6450 /codon_start=1 /function="protein tyrosine phosphatase" /gene="PTPRD" /map="9p23" /note="a long isoform expressed in the brain tissue" /product="protein tyrosine phosphatase receptor type D" /protein_id="BAE79816.1" /transl_table=1 /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFI CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF KDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYS APANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDL TPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKPLPKPPGTPVVTES TATSITLTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFR VVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQG YRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ VITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEP GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSST SILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTE YRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQ HGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSL TVTAYTTKGDGARSKPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGY RLKFGRKDMEPLTTLEFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIP EEVPTGFPQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLI VPADTTMTLTGLKPDTTYDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVM KTSVLLSWEIPENYNSAMPFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNR GNSAGGLQHRVTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVP LKKSRGKFIKPWESPDEMELDELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFT LGDDKHYGGFTNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITD EEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVE LRRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLE VNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETF GDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYC VRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVH CSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALL EAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPC NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE DFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYIL REFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISV HCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAA LEYLGSFDHYAT" BASE COUNT 2022 a 1555 c 1595 g 1649 t ORIGIN 1 gcagtttatt ctgggcctgt gtggaataga aagacaattc tttatttgac tggtaggaaa 61 gaaaagagaa gactcctcag ggtttccaag gaggactgga gcggctgctt tagtgaagaa 121 gtgaagaatc aaggaagtaa aggacctgtc tcaaagtcac acaactagga aatcttgagg 181 agtttgatac ttttcatcct ccagctataa aatcatcttg tagggggaag ctgtacattg 241 gtggaaaata aaaggcaagc agttcctggc ccgtgatatt ccagttagag gtgtctgact 301 gacagcatgt tggcaccgag ggaagcgatg ggcttcggct ccaggtttct gtcctgagac 361 cacagcagaa tgtgccttgg acaaaggctt ggactccttg atcttctggt aacttcaaaa 421 atctggtctc agggtggtga actttttctt cgaattccta acctgtgagc ttacgatgat 481 ggtgcctgtc cattaactga acaactgtgg ttttgaactt cttgaggcca gggactgtgt 541 ctgaaaacac cgacggtggc taactcaagg gagacgtctg gtgaacaccc gtgggatcta 601 aagaacaagc tctgaaagtg ttccagctga aatttcagat cggacagact cgctgcggct 661 ccggaggcag tgattccaag ctgctcgcgc acgctgctgc caagctgcag gatggtgcac 721 gtagccaggc tgctgctgct gctcctcact ttcttcctcc gcacggatgc tgagacacct 781 ccaaggttta cacgaacacc cgttgatcag acaggggtct ctggcggagt tgcctctttc 841 atctgccaag ctacgggaga cccaagacct aaaattgtct ggaacaaaaa aggaaagaaa 901 gtcagcaatc agagatttga ggtaatagag tttgacgatg ggtctggatc agttctcaga 961 atacaaccct tacggactcc gagggatgag gccatttatg aatgtgtggc ctcaaataat 1021 gtgggagaaa taagtgtatc caccagactc acagttttgc gggaagatca aattcccagg 1081 ggcttcccta ccattgacat gggcccacag ttgaaggtgg ttgagcgtac tcgcacggcc 1141 accatgcttt gtgcagccag tggtaatccg gatccagaaa tcacttggtt taaagatttc 1201 ttacctgtgg acacaagcaa caacaatggt cgtattaagc agttacgatc agaatctatt 1261 ggtggtacac caataagagg agcccttcag attgagcaga gtgaagagtc tgaccaagga 1321 aaatatgagt gtgttgccac caacagcgcg ggcactcgct attccgctcc tgccaattta 1381 tatgtcagag agctgcgaga agttcgccgt gtcccaccaa gattctctat cccacccact 1441 aatcatgaaa tcatgccagg cggaagcgtt aatatcacct gtgtggccgt ggggtcacca 1501 atgccttatg taaagtggat gttgggggca gaagatctga cacctgaaga tgatatgcca 1561 ataggaagaa atgtgctaga actgaatgat gtaagacagt cagcaaatta cacctgtgtt 1621 gctatgtcaa cactgggtgt cattgaagca atagcacaga tcactgtcaa acccttaccc 1681 aaacctccag gaactcctgt agtgaccgag agcacagcta caagcatcac actgacgtgg 1741 gactctggga accctgagcc tgtttcttat tacataattc agcataaacc taaaaactct 1801 gaggaacttt acaaagaaat tgatggggtg gcgaccacac gctacagtgt cgctggacta 1861 agtccctact cggattatga attcagggtt gttgctgtca ataacattgg gcgggggcct 1921 cccagcgaac ctgtgctaac acaaacctca gagcaagcac catccagtgc cccgagggat 1981 gtccaggcac gaatgttgag ttcgaccacc attttggtac agtggaagga acctgaagag 2041 ccaaatggac agatccaagg atatagagtt tattatacaa tggatcccac tcaacatgtc 2101 aacaactgga tgaaacacaa tgtagctgac agccaaatca ctactattgg caacttagtg 2161 ccccagaaaa catattctgt caaagtcctg gcttttacct caattggaga tggtcccctt 2221 tcaagtgaca tacaagtcat cactcagaca ggagtaccag ggcagccact aaacttcaaa 2281 gcagaacctg agtctgaaac aagtattttg ctctcttgga cacctccacg ttcagatacc 2341 attgccaact atgaactggt ctacaaagat ggggagcatg gagaggagca acgaattacc 2401 attgagccag ggacatcata taggctgcaa ggactgaaac caaacagctt atactatttc 2461 cgtctggctg cacgctcccc tcaaggcctg ggtgcttcta ctgcagaaat atcagctaga 2521 accatgcagt caaagccgtc agctcctcct caagacatta gttgcaccag cccaagttcc 2581 actagtattt tggtaagttg gcaacctcca ccagtggaaa aacagaatgg cattatcact 2641 gaatactcca tcaagtacac tgcagtggat ggggaagatg acaagcctca cgagattttg 2701 ggaattcctt cggacactac caaatacctt ttggaacagc tggaaaaatg gactgaatac 2761 cggatcactg tgacagccca tacagatgtc ggccctggcc ctgagagctt gtccgtgttg 2821 attcgaacca atgaagatgt tcctagtggt cctcctcgca aagtcgaggt agaggctgtc 2881 aactcaacat ctgttaaagt ctcatggcgc tcacccgtgc ccaataaaca gcatggccag 2941 ataagaggat atcaggtgca ttatgtgagg atggaaaatg gtgagcccaa gggccagccc 3001 atgctgaaag atgtcatgct ggctgatgca cagtgggaat ttgatgatac tactgaacat 3061 gacatgatca tttctgggct ccagcctgaa acttcctact ccctcaccgt cacagcctac 3121 acaaccaaag gagatggtgc tcgcagcaag cccaaactgg tgtccaccac tggggcagtt 3181 ccagggaaac ctcggcttgt gattaaccac actcagatga atactgctct tattcagtgg 3241 caccctccgg tggacacatt tggacctctt cagggctacc gtctaaaatt tggccgcaag 3301 gatatggagc cacttactac tcttgagttc tctgaaaaag aagatcactt tacagctaca 3361 gacatccaca agggagcatc atacgtcttc aggctctcag ccagaaacaa agtgggcttt 3421 ggggaggaga tggtgaagga gatttccatt ccagaagaag taccaactgg attccctcaa 3481 aaccttcact cagaaggcac cacttcaacc tccgtccagt tatcttggca accacctgtc 3541 ctggcagaga gaaatggcat tatcaccaag tatacccttc tttataggga tatcaacatc 3601 ccccttctcc cgatggagca gcttattgtt ccagctgaca ccactatgac actcactggc 3661 ttaaaaccag ataccacata cgatgtaaaa gtacgtgctc atacgagcaa agggcccggg 3721 ccatatagtc ccagtgtcca gttcaggaca ctgcctgtgg atcaagtgtt tgcaaaaaat 3781 tttcatgtca aagcagtaat gaagacttcc gtgttgctgt cttgggagat tccagagaat 3841 tataactccg ccatgccttt caaaattctt tatgatgatg ggaaaatggt agaagaagtg 3901 gatggccgag ccacacagaa gttaattgtc aacctgaagc ctgagaaatc atattcattt 3961 gtgctgacaa atcgtggaaa cagtgctggt gggctgcagc acagggtcac ggcaaagact 4021 gcaccagatg tattacgtac caagcctgcc ttcattggga agaccaactt ggatggcatg 4081 attactgtgc aactgcctga agtacctgca aatgagaata taaaaggtta ctacataata 4141 attgtgcctt tgaagaaatc tcgcgggaaa tttatcaagc catgggagag tccagatgaa 4201 atggaattag atgagctgct taaggagata tctaggaagc gcagaagcat ccgttatggg 4261 agagaagttg aattaaagcc atatattgcc gctcactttg atgtccttcc cactgagttc 4321 accctggggg atgacaagca ttatggtgga tttacaaaca agcaactcca aagtggtcaa 4381 gaatatgtct tctttgtgtt agcagtaatg gaacatgcag agtctaagat gtatgcaacc 4441 agcccttact ccgaccccgt ggtgtcaatg gatctggatc cgcagccaat cacggatgaa 4501 gaagaaggct tgatctgggt tgtaggtcct gtccttgcag tggtctttat catctgcatt 4561 gtcattgcta ttcttcttta taaaaggaag agggcagagt ccgactctag aaaaagcagc 4621 ataccgaaca ataaggagat cccttcacac cacccaacag accctgtaga actgaggcgc 4681 cttaactttc aaacaccggg tatggctagc catcctccaa tacccatctt ggaacttgca 4741 gaccacattg aaagattgaa agcaaatgac aacttgaagt tttcccagga atatgagtca 4801 attgaccctg gccagcagtt cacttgggaa cattcaaact tggaagtaaa caaaccaaag 4861 aatagatacg cgaatgtaat cgcatatgat cattcccggg ttctcctatc agctatagaa 4921 gggatcccag gaagtgacta tgtgaatgcc aactacatag atgggtatag gaagcaaaat 4981 gcctatattg caacacaggg atctctcccc gaaacatttg gggacttttg gagaatgata 5041 tgggaacaac ggagtgccac agttgtcatg atgacaaaac tagaagaaag atcaagggtg 5101 aagtgtgacc agtattggcc tagcagaggc acagaaaccc acggactcgt tcaagtaacg 5161 ctgcttgata ctgtggagct ggccacatat tgtgttcgaa catttgcact ttacaagaat 5221 ggttcaagtg agaagagaga agtgagacaa ttccagttca ccgcctggcc tgatcatggt 5281 gttccagaac accctacacc ttttctagct ttcttacgta gagtcaaaac ctgtaaccct 5341 cccgatgctg gtccgatggt tgtgcactgc agtgcgggag ttggccggac tggttgcttc 5401 atcgtcatag atgccatgtt agaaagaata aagcatgaaa aaactgtaga tatttatggc 5461 catgtaactt taatgagagc ccagaggaac tatatggttc aaacagaaga ccaatacatc 5521 tttatccatg atgcactgtt agaagcagtg acttgtggaa ataccgaagt gccagctaga 5581 aacttgtatg cctacattca gaagctgaca caaatagaaa cgggagagaa tgtcacagga 5641 atggagctcg aatttaagcg tctagccagc tcaaaagctc acacctcaag gtttatcagt 5701 gccaatcttc catgtaataa attcaaaaat cgccttgtta atattatgcc atatgaatcc 5761 acaagggtat gcctgcagcc tatccgtgga gtagaaggat ctgattacat caatgccagt 5821 tttattgatg gatacagaca acagaaagcc tacatcgcta cccaggggcc cttggcagag 5881 accactgaag acttctggcg gatgctctgg gaacacaatt ccaccatagt tgtgatgctc 5941 accaagctgc gtgaaatggg cagagagaaa tgtcaccaat actggccagc agaacggtct 6001 gcaagatacc agtactttgt tgtagatccc atggctgagt acaacatgcc acagtatatc 6061 ctaagggaat tcaaggtcac agatgccagg gacggccagt cccgaacagt aaggcagttc 6121 cagttcactg actggccaga gcaaggagtg ccaaagtccg gagaaggatt tattgacttc 6181 atcggccaag tccataaaac aaaagaacag tttggccaag atggacccat ttcagtccat 6241 tgcagcgcgg gcgttggaag aactggagtc ttcataacgc taagcattgt tttggaaaga 6301 atgagatatg aaggagttgt agatatcttc cagactgtca aaatgttaag aacacaacga 6361 ccagctatgg tacagacaga ggatcaatat cagttttcct atcgtgccgc actagagtac 6421 ctgggcagct ttgaccacta tgcaacgtag aaacccctga cccattctgg atttttacta 6481 caggcccttc aatatccatg gagtctcttc tgagccatac agggcacttg agaagtcctt 6541 cttaacttct agctaacaac tacttagtgg gactattaca cacaaaacaa attaaaaaca 6601 aattattcca ggtggaccaa gaattctttg acatcgcccc ttcccaccat actgctcata 6661 ataacatttt agggggaaag gggagggaat gtttaaaaag aaagtccttg atttagtttt 6721 ttagtattgt aaagatactg ctgacctgtg cttcatttct aactgtgtaa actttttttt 6781 aacaaaatgt atcattcgat aaagtgaatt ttaaaaaagt t //