LOCUS       AB211400                6821 bp    mRNA    linear   HUM 23-FEB-2006
DEFINITION  Homo sapiens PTPRD mRNA for protein tyrosine phosphatase receptor
            type D, complete cds.
ACCESSION   AB211400
VERSION     AB211400.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6821)
  AUTHORS   Kohno,T., Sato,M. and Yokota,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2005) to the DDBJ/EMBL/GenBank databases.
            Contact:Takashi Kohno
            Natl Cancer Ctr Res Inst, Biology Division; 1-1, Tsukiji 5-chome,
            Chuo-ku, Tokyo 104-0045, Japan
REFERENCE   2
  AUTHORS   Sato,M., Kohno,T. and Yokota,J.
  TITLE     Identification of Chromosome Arm 9p as the Most Frequent Target of
            Homozygous Deletions in Lung Cancer
  JOURNAL   Unpublished (2005)
COMMENT     
FEATURES             Location/Qualifiers
     source          1..6821
                     /chromosome="9"
                     /db_xref="H-InvDB:HIT000329928"
                     /db_xref="taxon:9606"
                     /map="9p23"
                     /mol_type="mRNA"
                     /organism="Homo sapiens"
     CDS             712..6450
                     /codon_start=1
                     /function="protein tyrosine phosphatase"
                     /gene="PTPRD"
                     /map="9p23"
                     /note="a long isoform expressed in the brain tissue"
                     /product="protein tyrosine phosphatase receptor type D"
                     /protein_id="BAE79816.1"
                     /transl_table=1
                     /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFI
                     CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN
                     NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF
                     KDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYS
                     APANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDL
                     TPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKPLPKPPGTPVVTES
                     TATSITLTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFR
                     VVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQG
                     YRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ
                     VITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEP
                     GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSST
                     SILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTE
                     YRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQ
                     HGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSL
                     TVTAYTTKGDGARSKPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGY
                     RLKFGRKDMEPLTTLEFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIP
                     EEVPTGFPQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLI
                     VPADTTMTLTGLKPDTTYDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVM
                     KTSVLLSWEIPENYNSAMPFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNR
                     GNSAGGLQHRVTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVP
                     LKKSRGKFIKPWESPDEMELDELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFT
                     LGDDKHYGGFTNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITD
                     EEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVE
                     LRRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLE
                     VNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETF
                     GDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYC
                     VRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVH
                     CSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALL
                     EAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPC
                     NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTE
                     DFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYIL
                     REFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISV
                     HCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAA
                     LEYLGSFDHYAT"
BASE COUNT         2022 a         1555 c         1595 g         1649 t
ORIGIN      
        1 gcagtttatt ctgggcctgt gtggaataga aagacaattc tttatttgac tggtaggaaa
       61 gaaaagagaa gactcctcag ggtttccaag gaggactgga gcggctgctt tagtgaagaa
      121 gtgaagaatc aaggaagtaa aggacctgtc tcaaagtcac acaactagga aatcttgagg
      181 agtttgatac ttttcatcct ccagctataa aatcatcttg tagggggaag ctgtacattg
      241 gtggaaaata aaaggcaagc agttcctggc ccgtgatatt ccagttagag gtgtctgact
      301 gacagcatgt tggcaccgag ggaagcgatg ggcttcggct ccaggtttct gtcctgagac
      361 cacagcagaa tgtgccttgg acaaaggctt ggactccttg atcttctggt aacttcaaaa
      421 atctggtctc agggtggtga actttttctt cgaattccta acctgtgagc ttacgatgat
      481 ggtgcctgtc cattaactga acaactgtgg ttttgaactt cttgaggcca gggactgtgt
      541 ctgaaaacac cgacggtggc taactcaagg gagacgtctg gtgaacaccc gtgggatcta
      601 aagaacaagc tctgaaagtg ttccagctga aatttcagat cggacagact cgctgcggct
      661 ccggaggcag tgattccaag ctgctcgcgc acgctgctgc caagctgcag gatggtgcac
      721 gtagccaggc tgctgctgct gctcctcact ttcttcctcc gcacggatgc tgagacacct
      781 ccaaggttta cacgaacacc cgttgatcag acaggggtct ctggcggagt tgcctctttc
      841 atctgccaag ctacgggaga cccaagacct aaaattgtct ggaacaaaaa aggaaagaaa
      901 gtcagcaatc agagatttga ggtaatagag tttgacgatg ggtctggatc agttctcaga
      961 atacaaccct tacggactcc gagggatgag gccatttatg aatgtgtggc ctcaaataat
     1021 gtgggagaaa taagtgtatc caccagactc acagttttgc gggaagatca aattcccagg
     1081 ggcttcccta ccattgacat gggcccacag ttgaaggtgg ttgagcgtac tcgcacggcc
     1141 accatgcttt gtgcagccag tggtaatccg gatccagaaa tcacttggtt taaagatttc
     1201 ttacctgtgg acacaagcaa caacaatggt cgtattaagc agttacgatc agaatctatt
     1261 ggtggtacac caataagagg agcccttcag attgagcaga gtgaagagtc tgaccaagga
     1321 aaatatgagt gtgttgccac caacagcgcg ggcactcgct attccgctcc tgccaattta
     1381 tatgtcagag agctgcgaga agttcgccgt gtcccaccaa gattctctat cccacccact
     1441 aatcatgaaa tcatgccagg cggaagcgtt aatatcacct gtgtggccgt ggggtcacca
     1501 atgccttatg taaagtggat gttgggggca gaagatctga cacctgaaga tgatatgcca
     1561 ataggaagaa atgtgctaga actgaatgat gtaagacagt cagcaaatta cacctgtgtt
     1621 gctatgtcaa cactgggtgt cattgaagca atagcacaga tcactgtcaa acccttaccc
     1681 aaacctccag gaactcctgt agtgaccgag agcacagcta caagcatcac actgacgtgg
     1741 gactctggga accctgagcc tgtttcttat tacataattc agcataaacc taaaaactct
     1801 gaggaacttt acaaagaaat tgatggggtg gcgaccacac gctacagtgt cgctggacta
     1861 agtccctact cggattatga attcagggtt gttgctgtca ataacattgg gcgggggcct
     1921 cccagcgaac ctgtgctaac acaaacctca gagcaagcac catccagtgc cccgagggat
     1981 gtccaggcac gaatgttgag ttcgaccacc attttggtac agtggaagga acctgaagag
     2041 ccaaatggac agatccaagg atatagagtt tattatacaa tggatcccac tcaacatgtc
     2101 aacaactgga tgaaacacaa tgtagctgac agccaaatca ctactattgg caacttagtg
     2161 ccccagaaaa catattctgt caaagtcctg gcttttacct caattggaga tggtcccctt
     2221 tcaagtgaca tacaagtcat cactcagaca ggagtaccag ggcagccact aaacttcaaa
     2281 gcagaacctg agtctgaaac aagtattttg ctctcttgga cacctccacg ttcagatacc
     2341 attgccaact atgaactggt ctacaaagat ggggagcatg gagaggagca acgaattacc
     2401 attgagccag ggacatcata taggctgcaa ggactgaaac caaacagctt atactatttc
     2461 cgtctggctg cacgctcccc tcaaggcctg ggtgcttcta ctgcagaaat atcagctaga
     2521 accatgcagt caaagccgtc agctcctcct caagacatta gttgcaccag cccaagttcc
     2581 actagtattt tggtaagttg gcaacctcca ccagtggaaa aacagaatgg cattatcact
     2641 gaatactcca tcaagtacac tgcagtggat ggggaagatg acaagcctca cgagattttg
     2701 ggaattcctt cggacactac caaatacctt ttggaacagc tggaaaaatg gactgaatac
     2761 cggatcactg tgacagccca tacagatgtc ggccctggcc ctgagagctt gtccgtgttg
     2821 attcgaacca atgaagatgt tcctagtggt cctcctcgca aagtcgaggt agaggctgtc
     2881 aactcaacat ctgttaaagt ctcatggcgc tcacccgtgc ccaataaaca gcatggccag
     2941 ataagaggat atcaggtgca ttatgtgagg atggaaaatg gtgagcccaa gggccagccc
     3001 atgctgaaag atgtcatgct ggctgatgca cagtgggaat ttgatgatac tactgaacat
     3061 gacatgatca tttctgggct ccagcctgaa acttcctact ccctcaccgt cacagcctac
     3121 acaaccaaag gagatggtgc tcgcagcaag cccaaactgg tgtccaccac tggggcagtt
     3181 ccagggaaac ctcggcttgt gattaaccac actcagatga atactgctct tattcagtgg
     3241 caccctccgg tggacacatt tggacctctt cagggctacc gtctaaaatt tggccgcaag
     3301 gatatggagc cacttactac tcttgagttc tctgaaaaag aagatcactt tacagctaca
     3361 gacatccaca agggagcatc atacgtcttc aggctctcag ccagaaacaa agtgggcttt
     3421 ggggaggaga tggtgaagga gatttccatt ccagaagaag taccaactgg attccctcaa
     3481 aaccttcact cagaaggcac cacttcaacc tccgtccagt tatcttggca accacctgtc
     3541 ctggcagaga gaaatggcat tatcaccaag tatacccttc tttataggga tatcaacatc
     3601 ccccttctcc cgatggagca gcttattgtt ccagctgaca ccactatgac actcactggc
     3661 ttaaaaccag ataccacata cgatgtaaaa gtacgtgctc atacgagcaa agggcccggg
     3721 ccatatagtc ccagtgtcca gttcaggaca ctgcctgtgg atcaagtgtt tgcaaaaaat
     3781 tttcatgtca aagcagtaat gaagacttcc gtgttgctgt cttgggagat tccagagaat
     3841 tataactccg ccatgccttt caaaattctt tatgatgatg ggaaaatggt agaagaagtg
     3901 gatggccgag ccacacagaa gttaattgtc aacctgaagc ctgagaaatc atattcattt
     3961 gtgctgacaa atcgtggaaa cagtgctggt gggctgcagc acagggtcac ggcaaagact
     4021 gcaccagatg tattacgtac caagcctgcc ttcattggga agaccaactt ggatggcatg
     4081 attactgtgc aactgcctga agtacctgca aatgagaata taaaaggtta ctacataata
     4141 attgtgcctt tgaagaaatc tcgcgggaaa tttatcaagc catgggagag tccagatgaa
     4201 atggaattag atgagctgct taaggagata tctaggaagc gcagaagcat ccgttatggg
     4261 agagaagttg aattaaagcc atatattgcc gctcactttg atgtccttcc cactgagttc
     4321 accctggggg atgacaagca ttatggtgga tttacaaaca agcaactcca aagtggtcaa
     4381 gaatatgtct tctttgtgtt agcagtaatg gaacatgcag agtctaagat gtatgcaacc
     4441 agcccttact ccgaccccgt ggtgtcaatg gatctggatc cgcagccaat cacggatgaa
     4501 gaagaaggct tgatctgggt tgtaggtcct gtccttgcag tggtctttat catctgcatt
     4561 gtcattgcta ttcttcttta taaaaggaag agggcagagt ccgactctag aaaaagcagc
     4621 ataccgaaca ataaggagat cccttcacac cacccaacag accctgtaga actgaggcgc
     4681 cttaactttc aaacaccggg tatggctagc catcctccaa tacccatctt ggaacttgca
     4741 gaccacattg aaagattgaa agcaaatgac aacttgaagt tttcccagga atatgagtca
     4801 attgaccctg gccagcagtt cacttgggaa cattcaaact tggaagtaaa caaaccaaag
     4861 aatagatacg cgaatgtaat cgcatatgat cattcccggg ttctcctatc agctatagaa
     4921 gggatcccag gaagtgacta tgtgaatgcc aactacatag atgggtatag gaagcaaaat
     4981 gcctatattg caacacaggg atctctcccc gaaacatttg gggacttttg gagaatgata
     5041 tgggaacaac ggagtgccac agttgtcatg atgacaaaac tagaagaaag atcaagggtg
     5101 aagtgtgacc agtattggcc tagcagaggc acagaaaccc acggactcgt tcaagtaacg
     5161 ctgcttgata ctgtggagct ggccacatat tgtgttcgaa catttgcact ttacaagaat
     5221 ggttcaagtg agaagagaga agtgagacaa ttccagttca ccgcctggcc tgatcatggt
     5281 gttccagaac accctacacc ttttctagct ttcttacgta gagtcaaaac ctgtaaccct
     5341 cccgatgctg gtccgatggt tgtgcactgc agtgcgggag ttggccggac tggttgcttc
     5401 atcgtcatag atgccatgtt agaaagaata aagcatgaaa aaactgtaga tatttatggc
     5461 catgtaactt taatgagagc ccagaggaac tatatggttc aaacagaaga ccaatacatc
     5521 tttatccatg atgcactgtt agaagcagtg acttgtggaa ataccgaagt gccagctaga
     5581 aacttgtatg cctacattca gaagctgaca caaatagaaa cgggagagaa tgtcacagga
     5641 atggagctcg aatttaagcg tctagccagc tcaaaagctc acacctcaag gtttatcagt
     5701 gccaatcttc catgtaataa attcaaaaat cgccttgtta atattatgcc atatgaatcc
     5761 acaagggtat gcctgcagcc tatccgtgga gtagaaggat ctgattacat caatgccagt
     5821 tttattgatg gatacagaca acagaaagcc tacatcgcta cccaggggcc cttggcagag
     5881 accactgaag acttctggcg gatgctctgg gaacacaatt ccaccatagt tgtgatgctc
     5941 accaagctgc gtgaaatggg cagagagaaa tgtcaccaat actggccagc agaacggtct
     6001 gcaagatacc agtactttgt tgtagatccc atggctgagt acaacatgcc acagtatatc
     6061 ctaagggaat tcaaggtcac agatgccagg gacggccagt cccgaacagt aaggcagttc
     6121 cagttcactg actggccaga gcaaggagtg ccaaagtccg gagaaggatt tattgacttc
     6181 atcggccaag tccataaaac aaaagaacag tttggccaag atggacccat ttcagtccat
     6241 tgcagcgcgg gcgttggaag aactggagtc ttcataacgc taagcattgt tttggaaaga
     6301 atgagatatg aaggagttgt agatatcttc cagactgtca aaatgttaag aacacaacga
     6361 ccagctatgg tacagacaga ggatcaatat cagttttcct atcgtgccgc actagagtac
     6421 ctgggcagct ttgaccacta tgcaacgtag aaacccctga cccattctgg atttttacta
     6481 caggcccttc aatatccatg gagtctcttc tgagccatac agggcacttg agaagtcctt
     6541 cttaacttct agctaacaac tacttagtgg gactattaca cacaaaacaa attaaaaaca
     6601 aattattcca ggtggaccaa gaattctttg acatcgcccc ttcccaccat actgctcata
     6661 ataacatttt agggggaaag gggagggaat gtttaaaaag aaagtccttg atttagtttt
     6721 ttagtattgt aaagatactg ctgacctgtg cttcatttct aactgtgtaa actttttttt
     6781 aacaaaatgt atcattcgat aaagtgaatt ttaaaaaagt t
//