LOCUS AB209912 3904 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for thrombospondin 1 precursor variant protein.
ACCESSION AB209912
VERSION AB209912.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3904)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..3904
/clone="ej00565"
/db_xref="H-InvDB:HIT000329847"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003002645"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="aorta endothelial cell"
CDS <1..3678
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="thrombospondin 1 precursor variant"
/protein_id="BAD93149.1"
/translation="SWPASSGLLPLSRSNLYSGRTGIPRAPPALAALATAPGRRAPVH
TGSLLGTNSSTMGLAWGLGVLFLMHVCGTNRIPESGGDNSVFDIFELTGAARKGSGRR
LVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRAEKGFLLLASLRQMKKTRGTLL
ALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQED
RAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGT
TPEDILRNKGCSSSTSVLLTLDNNVVNGSSPAIRTNYIGHKTKDLQAICGISCDELSS
MVLELRGLRTIVTTLQDSIRKVTEENKELANELRRPPLCYHNGVQYRNNEEWTVDSCT
ECHCQNSVTICKKVSCPIMPCSNATVPDGECCPRCWPSDSADDGWSPWSEWTSCSTSC
GNGIQQRGRSCDSLNNRCEGSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGD
GVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGG
VQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPIDGCLSNPCFAGVKCTSYPDGS
WKCGACPPGYSGNGIQCTDVDECKEVPDACFNHNGEHRCENTDPGYNCLPCPPRFTGS
QPFGQGVEHATANKQVCKPRNPCTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGN
GIICGEDTDLDGWPSENLVCVANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDD
NDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYNHNPDQADTDNNGEGDACAADI
DGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEHNPDQLDSDSDRIGDTCDNN
QDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPD
QKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIPLDPKGTSQNDP
NWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSS
RFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVR
TLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYDKTYAGGRLG
LFVFSQEMVFFSDLKYECRDP"
BASE COUNT 970 a 1091 c 1045 g 798 t
ORIGIN
1 agctggcctg cgagttcagg gctcctgccg ctctccagga gcaacctcta ctccggacgc
61 acaggcattc cccgcgcccc tccagccctc gccgccctcg ccaccgctcc cggccgccgc
121 gctccggtac acacaggatc cctgctgggc accaacagct ccaccatggg gctggcctgg
181 ggactaggcg tcctgttcct gatgcatgtg tgtggcacca accgcattcc agagtctggc
241 ggagacaaca gcgtgtttga catctttgaa ctcaccgggg ccgcccgcaa ggggtctggg
301 cgccgactgg tgaagggccc cgacccttcc agcccagctt tccgcatcga ggatgccaac
361 ctgatccccc ctgtgcctga tgacaagttc caagacctgg tggatgctgt gcgggcagaa
421 aagggtttcc tccttctggc atccctgagg cagatgaaga agacccgggg cacgctgctg
481 gccctggagc ggaaagacca ctctggccag gtcttcagcg tggtgtccaa tggcaaggcg
541 ggcaccctgg acctcagcct gaccgtccaa ggaaagcagc acgtggtgtc tgtggaagaa
601 gctctcctgg caaccggcca gtggaagagc atcaccctgt ttgtgcagga agacagggcc
661 cagctgtaca tcgactgtga aaagatggag aatgctgagt tggacgtccc catccaaagc
721 gtcttcacca gagacctggc cagcatcgcc agactccgca tcgcaaaggg gggcgtcaat
781 gacaatttcc agggggtgct gcagaatgtg aggtttgtct ttggaaccac accagaagac
841 atcctcagga acaaaggctg ctccagctct accagtgtcc tcctcaccct tgacaacaac
901 gtggtgaatg gttccagccc tgccatccgc actaactaca ttggccacaa gacaaaggac
961 ttgcaagcca tctgcggcat ctcctgtgat gagctgtcca gcatggtcct ggaactcagg
1021 ggcctgcgca ccattgtgac cacgctgcag gacagcatcc gcaaagtgac tgaagagaac
1081 aaagagttgg ccaatgagct gaggcggcct cccctatgct atcacaacgg agttcagtac
1141 agaaataacg aggaatggac tgttgatagc tgcactgagt gtcactgtca gaactcagtt
1201 accatctgca aaaaggtgtc ctgccccatc atgccctgct ccaatgccac agttcctgat
1261 ggagaatgct gtcctcgctg ttggcccagc gactctgcgg acgatggctg gtctccatgg
1321 tccgagtgga cctcctgttc tacgagctgt ggcaatggaa ttcagcagcg cggccgctcc
1381 tgcgatagcc tcaacaaccg atgtgagggc tcctcggtcc agacacggac ctgccacatt
1441 caggagtgtg acaagagatt taaacaggat ggtggctgga gccactggtc cccatggtca
1501 tcttgttctg tgacatgtgg tgatggtgtg atcacaagga tccggctctg caactctccc
1561 agcccccaga tgaacgggaa accctgtgaa ggcgaagcgc gggagaccaa agcctgcaag
1621 aaagacgcct gccccatcaa tggaggctgg ggtccttggt caccatggga catctgttct
1681 gtcacctgtg gaggaggggt acagaaacgt agtcgtctct gcaacaaccc cacaccccag
1741 tttggaggca aggactgcgt tggtgatgta acagaaaacc agatctgcaa caagcaggac
1801 tgtccaattg atggatgcct gtccaatccc tgctttgccg gcgtgaagtg tactagctac
1861 cctgatggca gctggaaatg tggtgcttgt ccccctggtt acagtggaaa tggcatccag
1921 tgcacagatg ttgatgagtg caaagaagtg cctgatgcct gcttcaacca caatggagag
1981 caccggtgtg agaacacgga ccccggctac aactgcctgc cctgcccccc acgcttcacc
2041 ggctcacagc ccttcggcca gggtgtcgaa catgccacgg ccaacaaaca ggtgtgcaag
2101 ccccgtaacc cctgcacgga tgggacccac gactgcaaca agaacgccaa gtgcaactac
2161 ctgggccact atagcgaccc catgtaccgc tgcgagtgca agcctggcta cgctggcaat
2221 ggcatcatct gcggggagga cacagacctg gatggctggc ccagtgagaa cctggtgtgc
2281 gtggccaatg cgacttacca ctgcaaaaag gataattgcc ccaaccttcc caactcaggg
2341 caggaagact atgacaagga tggaattggt gatgcctgtg atgatgacga tgacaatgat
2401 aaaattccag atgacaggga caactgtcca ttccattaca acccagctca gtatgactat
2461 gacagagatg atgtgggaga ccgctgtgac aactgtccct acaaccacaa cccagatcag
2521 gcagacacag acaacaatgg ggaaggagac gcctgtgctg cagacattga tggagacggt
2581 atcctcaatg aacgggacaa ctgccagtac gtctacaatg tggaccagag agacactgat
2641 atggatgggg ttggagatca gtgtgacaat tgccccttgg aacacaatcc ggatcagctg
2701 gactctgact cagaccgcat tggagatacc tgtgacaaca atcaggatat tgatgaagat
2761 ggccaccaga acaatctgga caactgtccc tatgtgccca atgccaacca ggctgaccat
2821 gacaaagatg gcaagggaga tgcctgtgac cacgatgatg acaacgatgg cattcctgat
2881 gacaaggaca actgcagact cgtgcccaat cccgaccaga aggactctga cggcgatggt
2941 cgaggtgatg cctgcaaaga tgattttgac catgacagtg tgccagacat cgatgacatc
3001 tgtcctgaga atgttgacat cagtgagacc gacttccgcc gattccagat gattcctctg
3061 gaccccaaag ggacatccca aaatgaccct aactgggttg tacgccatca gggtaaagaa
3121 ctcgtccaga ctgtcaactg tgatcctgga ctcgctgtag gttatgatga gtttaatgct
3181 gtggacttca gtggcacctt cttcatcaac accgaaaggg acgatgacta tgctggattt
3241 gtctttggct accagtccag cagccgcttt tatgttgtga tgtggaagca agtcacccag
3301 tcctactggg acaccaaccc cacgagggct cagggatact cgggcctttc tgtgaaagtt
3361 gtaaactcca ccacagggcc tggcgagcac ctgcggaacg ccctgtggca cacaggaaac
3421 acccctggcc aggtgcgcac cctgtggcat gaccctcgtc acataggctg gaaagatttc
3481 accgcctaca gatggcgtct cagccacagg ccaaagacgg gtttcattag agtggtgatg
3541 tatgaaggga agaaaatcat ggctgactca ggacccatct atgataaaac ctatgctggt
3601 ggtagactag ggttgtttgt cttctctcaa gaaatggtgt tcttctctga cctgaaatac
3661 gaatgtagag atccctaatc atcaaattgt tgattgaaag actgatcata aaccaatgct
3721 ggtattgcac cttctggaac tatgggcttg agaaaatccc caggatcact tctccttggc
3781 ttccttcttt tctgtgcttg catcagtgtg gactcctaga acgtgcgacc tgcctcaaga
3841 aaatgcagtt ttcaaaaaca gactcagcat tcagcctcca atgaataaga catcttccaa
3901 gcat
//