LOCUS AB209879 3439 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for procollagen-lysine, 2-oxoglutarate
5-dioxygenase 2 isoform b variant protein.
ACCESSION AB209879
VERSION AB209879.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3439)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..3439
/clone="ef04937"
/db_xref="H-InvDB:HIT000329814"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003002565"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="aorta endothelial cell"
CDS <1..2392
/codon_start=2
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="procollagen-lysine, 2-oxoglutarate
5-dioxygenase 2 isoform b variant"
/protein_id="BAD93116.1"
/translation="RRPHSAALRAAPAAGRAPCPPAPARNRRLRADPGLCVLARSAAL
RGRGRLSPRGPRGPNMGGCTVKPQLLLLALVLHPWNPCLGADSEKPSSIPTDKLLVIT
VATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQKVRLMKEVMEHYA
DQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHI
GKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKREAINITLDHKCK
IFQTLNGAVDEVVLKFENGKARAKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWTQ
DNGCTLCEFDTVDLSAVDVHPNVSIGVFIEQPTPFLPRFLDILLTLDYPKEALKLFIH
NKEVYHEKDIKVFFDKAKHEIKTIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYFSV
DADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQ
GNRVGVWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMGVFMYIS
NRHEFGRLLSTANYNTSHYNNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDV
FWFPIFSEKACDELVEEMEHYGKWSGGKHHDSRISGGYENVPTDDIHMKQVDLENVWL
HFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNV
GEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP"
BASE COUNT 1080 a 595 c 717 g 1047 t
ORIGIN
1 ccgacgacct cactcagctg cgttacgcgc cgctccggct gccggccgcg cgccttgccc
61 gccggctccc gcccgcaatc ggcggctcag ggcggacccg ggtctctgcg ttctcgcgag
121 aagcgcggcg ctgcggggcc gtgggcgcct gagcccgcgc ggccctcgag ggccgaatat
181 ggggggatgc acggtgaagc ctcagctgct gctcctggcg ctcgtcctcc acccctggaa
241 tccctgtctg ggtgcggact cggagaagcc ctcgagcatc cccacagata aattattagt
301 cataactgta gcaacaaaag aaagtgatgg attccatcga tttatgcagt cagccaaata
361 tttcaattat actgtgaagg tccttggtca aggagaagaa tggagaggtg gtgatggaat
421 taatagtatt ggagggggcc agaaagtgag attaatgaaa gaagtcatgg aacactatgc
481 tgatcaagat gatctggttg tcatgtttac tgaatgcttt gatgtcatat ttgctggtgg
541 tccagaagaa gttctaaaaa aattccaaaa ggcaaaccac aaagtggtct ttgcagcaga
601 tggaattttg tggccagata aaagactagc agacaagtat cctgttgtgc acattgggaa
661 acgctatctg aattcaggag gatttattgg ctatgctcca tatgtcaacc gtatagttca
721 acaatggaat ctccaggata atgatgatga tcagctcttt tacactaaag tttacattga
781 tccactgaaa agggaagcta ttaacatcac attggatcac aaatgcaaaa ttttccagac
841 cttaaatgga gctgtagatg aagttgtttt aaaatttgaa aatggcaaag ccagagctaa
901 gaatacattt tatgaaacat taccagtggc aattaatgga aatggaccca ccaagattct
961 cctgaattat tttggaaact atgtacccaa ttcatggaca caggataatg gctgcactct
1021 ttgtgaattc gatacagtcg acttgtctgc agtagatgtc catccaaacg tatcaatagg
1081 tgtttttatt gagcaaccaa ccccttttct acctcggttt ctggacatat tgttgacact
1141 ggattaccca aaagaagcac ttaaactttt tattcataac aaagaagttt atcatgaaaa
1201 ggacatcaag gtattttttg ataaagctaa gcatgaaatc aaaactataa aaatagtagg
1261 accagaagaa aatctaagtc aagcggaagc cagaaacatg ggaatggact tttgccgtca
1321 ggatgaaaag tgtgattatt actttagtgt ggatgcagat gttgttttga caaatccaag
1381 gactttaaaa attttgattg aacaaaacag aaagatcatt gctcctcttg taactcgtca
1441 tggaaagctg tggtccaatt tctggggagc attgagtcct gatggatact atgcacgatc
1501 tgaagattat gtggatattg ttcaagggaa tagagtagga gtatggaatg tcccatatat
1561 ggctaatgtg tacttaatta aaggaaagac actccgatca gagatgaatg aaaggaacta
1621 ttttgttcgt gataaactgg atcctgatat ggctctttgc cgaaatgcta gagaaatggg
1681 tgtatttatg tacatttcta atagacatga atttggaagg ctattatcca ctgctaatta
1741 caatacttcc cattataaca atgacctctg gcagattttt gaaaatcctg tggactggaa
1801 ggaaaagtat ataaaccgtg attattcaaa gattttcact gaaaatatag ttgaacagcc
1861 ctgtccagat gtcttttggt tccccatatt ttctgaaaaa gcctgtgatg aattggtaga
1921 agaaatggaa cattacggca aatggtctgg gggaaaacat catgatagcc gtatatctgg
1981 tggttatgaa aatgtcccaa ctgatgatat ccacatgaag caagttgatc tggagaatgt
2041 atggcttcat tttatccggg agttcattgc accagttaca ctgaaggtct ttgcaggcta
2101 ttatacgaag ggatttgcac tactgaattt tgtagtaaaa tactcccctg aacgacagcg
2161 ttctcttcgt cctcatcatg atgcttctac atttaccata aacattgcac ttaataacgt
2221 gggagaagac tttcagggag gtggttgcaa atttctaagg tacaattgct ctattgagtc
2281 accacgaaaa ggctggagct tcatgcatcc tgggagactc acacatttgc atgaaggact
2341 tcctgttaaa aatggaacaa gatacattgc agtgtcattt atagatccct aagttattta
2401 cttttcattg aattgaaatt tattttgggt gaatgactgg catgaacacg tctttgaagt
2461 tgtggctgag aagatgagag gaatatttaa ataacatcaa cagaacaact tcactttggg
2521 ccaaacattt gaaaaacttt ttataaaaaa ttgtttgata tttcttaatg tctgctctga
2581 gccttaaaac acagattgaa gaagaaaaga aagaaaaaac ttaaatattt atttctatgc
2641 tttgttgcct ctgagaataa tgacaattta tgaatttgtg tttcaaattg ataaaatatt
2701 taggtacaaa taacaagact aataatattt tcttatttaa aaaaagcatg ggaagatttt
2761 tatttatcaa aatatagagg aaatgtagac aaaatggata taaatgaaaa ttaccatgtt
2821 gtaaaacctt gaaaatcaga ttctaactgg atttgtatgc aactaagtat ttttctgaac
2881 acctatgcag gtcttattta cagtagttac taagggaaca cacaaagaat tacacaacgt
2941 tttcctcaag aaaatggtac aaaacacaac cgaggagcgt atacagttga aaacattttt
3001 gttttgattg gaaggcagat tattttatat tagtattaaa aatcaaaccc tatgtttctt
3061 tcagatgaat cttccaaagt ggattatatt aagcaggtat tagatttagg aaaacctttc
3121 catttcttaa agtattatca agtgtcaaga tcagcaagtg tccttaagtc aaacaggttt
3181 tttttgttgt tgtttttgct ttgtttcctt ttttagaaag ttctagaaaa taggaaaacg
3241 aaaaatttca ttgagatgag tagtgcattt aattattttt taaaaaactt tttaagtact
3301 tgaattttat atcaggaaaa caaagttgtt gagccttgct tcttccgttt tgccctttgt
3361 ctcgctcctt attctttttt tggggggagg gttatttgct tttttatctt cctggcataa
3421 tttccatttt attcttctg
//