LOCUS AB209702 4465 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for protein tyrosine phosphatase, receptor type,
A isoform 2 precursor variant protein.
ACCESSION AB209702
VERSION AB209702.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4465)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..4465
/clone="bj00338"
/db_xref="H-InvDB:HIT000329637"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003001981"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1975..3930
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="protein tyrosine phosphatase, receptor type, A
isoform 2 precursor variant"
/protein_id="BAD92939.1"
/translation="AGIQRCDLPLPPLCSILHCDHFLIRFKKYKQAGSHSNSFRLSNG
RTEDVEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPI
QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFI
AAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSV
EDVTVLVDYTVRKFCIQQVGDMTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKV
KACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMV
QTDMQYVFIYQALLEHYLYGDTELEVTSLETHLQKIYNKIPGTSNNGLEEEFKKLTSI
KIQNDKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKD
SYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLVSYGDIT
VELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMISIIAAVQ
KQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMV
QTLEQYEFCYKVVQEYIDAFSDYANFK"
BASE COUNT 1203 a 1120 c 1067 g 1075 t
ORIGIN
1 ccggccgctg ccgccatcac tgtcgcccgc ccagtcgccc ctcagccgct tcccctcgcc
61 atggaggcga ggccgccgcc gccgccgcgg ggctcggagc cgcgggccgg gcggcggccc
121 tgagggctag tggcggcccg aaacgccgcc gcggagccga ggcggagccg ctgtcctcgt
181 ccccagcggt cccgcccaac gcccgactct gtgacacaac taaaaaaaaa acaaaggtat
241 ttatggaatt ccactgagtg gtaatggatg atgcagttca aataactaag gacacatgtt
301 caaagagcat aattaacttt ttaaaagaag ctaataagca tggattcctg gttcattctt
361 gttctgctcg gcagtggtct gatatgtgtc agtgccaaca atgctaccac agttgcacct
421 tctgtaggaa ttacaagatt aattaactca tcaacggcag aaccagttaa agaagaggcc
481 aaaacttcaa atccaacttc ttcactaact tctctttctg tggcaccaac attcagccca
541 aatataactc tgggacccac ctatttaacc actgtcaatt cttcagactc tgacaatggg
601 accacaagaa cagcaagcac caattctata ggcattacaa tttcaccaaa tggaacgtgg
661 cttccagata accagttcac ggatgccaga acagaaccct gggaggggaa ttccagcacc
721 gcagcaacca ctccagaaac tttccctcct tcaggtaatt ctgactcgaa ggacagaaga
781 gatgagacac caattattgc ggtgatggtg gccctgtcct ctctgctagt gatcgtgttt
841 attatcatag ttttgtacat gttaaggtga gcctactaac acttcacatt ctcttagatt
901 ctgtttcaat atcccagtgt cccaatgaac ccacacagtc cagtagacag taggatatac
961 acaatgaata ggatagaggg ggaatgaccc atgatagtgc taaaattgaa gttctactta
1021 gaaattattt aaaagctcta catagtcttc cttaagtcct aagccctccc tctttcttcc
1081 atctgtccaa gcccagtctc ccaactccag tgcaagctaa agcccagaat ggtagtttgg
1141 aggttgaggt aagaaaccgc agtttgttat tagtgacagg tgttacagga tctctaggtc
1201 tagccctgct gaagcaaccc ctaaaagggc cccagtaaga ttacatgctc aacaaaagcc
1261 tactgtattt ctggctgggg ctttgtcccc agacccttct gggacccctg gccctggcat
1321 gttgagttga gccatgtgag ttgtgagtta caggatccct ctttctaacc ttctttcagg
1381 gtcctctaga cgttaccact caagcagaag caaggaaggg gaacccaagg gagagaagag
1441 ggtggtgcat ttattctctt cctgctaaag ctactgccct gactaattgg atttagccct
1501 gccttatctt tggcctaacc aaagatgttc tgtgctccct ctgttcttct gcagggataa
1561 agagagagga atcatgtgcc ccctataatt tgtcatgtgt ctctatcatt ctgcaggaga
1621 cttgtggcca ggactgtgtc cacccaatcc aaagctctgg gcttctccct gggtctccca
1681 ggctacactg aggaaatacc aagatttttg tttgatatat attgtctgtc tcccccagct
1741 gtattccacc cactcaccct ctctctacct ggtgtggctg tgctctgcag tgagccacat
1801 gagcctgaat atactgttgg ggttccctgg ttggattcca gtgtgccaag ggtaaacagg
1861 agtatcccga ggtactcggt caccccagca tgctgctgcc tcagggtgtg catgacctgt
1921 ctctaaaaaa gcccgattat ttttaaaggc gatttagaaa ggctgaattg atgagcagga
1981 atacagaggt gtgatttgcc tctcccacct ctgtgctcca ttcttcactg tgatcatttt
2041 ctcattaggt ttaagaaata caagcaagct gggagccatt ccaattcttt ccgcttatcc
2101 aacggccgca ctgaggatgt ggagccccag agtgtgccac ttctggccag atccccaagc
2161 accaacagga aatacccacc cctgcccgtg gacaagctgg aagaggaaat taaccggaga
2221 atggcagacg acaataagct cttcagggag gaattcaacg ctctccctgc atgtcctatc
2281 caggccacct gtgaggctgc ttccaaggag gaaaacaagg aaaaaaatcg atatgtaaac
2341 atcttgcctt atgaccactc tagagtccac ctgacaccgg ttgaaggggt tccagattct
2401 gattacatca atgcttcatt catcaacggc taccaagaaa agaacaaatt cattgctgca
2461 caaggaccaa aagaagaaac ggtgaatgat ttctggcgga tgatctggga acaaaacaca
2521 gccaccatcg tcatggttac caacctgaag gagagaaagg agtgcaagtg cgcccagtac
2581 tggccagacc aaggctgctg gacctatggg aatattcggg tgtctgtaga ggatgtgact
2641 gtcctggtgg actacacagt acggaagttc tgcatccagc aggtgggcga catgaccaac
2701 agaaagccac agcgcctcat cactcagttc cactttacca gctggccaga ctttggggtg
2761 ccttttaccc cgatcggcat gctcaagttc ctcaagaagg tgaaggcctg taaccctcag
2821 tatgcagggg ccatcgtggt ccactgcagt gcaggtgtag ggcgtacagg tacctttgtc
2881 gtcattgatg ccatgctgga catgatgcat acagaacgga aggtggacgt gtatggcttt
2941 gtgagccgga tccgggcaca gcgctgccag atggtgcaaa ccgatatgca gtatgtcttc
3001 atataccaag cccttctgga gcattatctc tatggagata cagaactgga agtgacctct
3061 ctagaaaccc acctgcagaa aatttacaac aaaatcccag ggaccagcaa caatggatta
3121 gaggaggagt ttaagaagtt aacatcaatc aaaatccaga atgacaagat gcggactgga
3181 aaccttccag ccaacatgaa gaagaaccgt gttttacaga tcattccata tgaattcaac
3241 agagtgatca ttccagttaa gcggggcgaa gagaatacag actatgtgaa cgcatccttt
3301 attgatggct accggcagaa ggactcctat atcgccagcc agggccctct tctccacaca
3361 attgaggact tctggcgaat gatctgggag tggaaatcct gctctatcgt gatgctaaca
3421 gaactggagg agagaggcca ggagaagtgt gcccagtact ggccatctga tggactggtg
3481 tcctatggag atattacagt ggaactgaag aaggaggagg aatgtgagag ctacaccgtc
3541 cgagacctcc tggtcaccaa caccagggag aataagagcc ggcagatccg gcagttccac
3601 ttccatggct ggcctgaagt gggcatcccc agtgacggaa agggcatgat cagcatcatc
3661 gccgccgtgc agaagcagca gcagcagtca gggaaccacc ccatcaccgt gcactgcagc
3721 gccggggcag gaaggacggg gaccttctgt gccctgagca ccgtcctgga gcgtgtgaaa
3781 gcagagggga ttttggatgt cttccagact gtcaagagcc tgcggctaca gaggccacac
3841 atggtccaga cactggaaca gtatgagttc tgctacaagg tggtgcagga gtatattgat
3901 gcattctcag attatgccaa cttcaagtaa gcggcaacaa gggtccgtgg accaggagga
3961 ttgcctttaa tattttgtaa tattctgttt tgttaatata ccccaaattg tgtatatatc
4021 ttataactgt tttagaaatt ggtacatagg cttctattac ctattaggtg gaaattttat
4081 atgtaaatgt gttagcactg atagtccttt ttccaatgtt ttattgggga attaaatagt
4141 gtgatgtttg gattgatatc gtgaaatcct cagccgagaa attgggctgg attgtgcttt
4201 ggttaataca tctttcccta aagaagataa acacaaaatc cattccaggt agctcggcac
4261 caactaagaa aaaaagcaca aagttctcag agctctcgag gaaagtggtt gttcccgtac
4321 caccatgcac tgtaaatatc cctcccctct ctccctggtc ccctccccca tccccaccac
4381 tgatatcatg gggagtaata ggaccagagc ggtatctctg gcaccacact agggactatc
4441 aggtaataaa agctttgact ccctg
//