LOCUS AB209686 5826 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for collagen, type XXIV, alpha 1 variant protein.
ACCESSION AB209686
VERSION AB209686.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5826)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..5826
/clone="pf06236"
/db_xref="H-InvDB:HIT000329621"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003001952"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1913..4516
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="collagen, type XXIV, alpha 1 variant"
/protein_id="BAD92923.1"
/translation="KITVFATLYSFLTGRSRRSRKYWKIGETGPVGLPGEVGMTGSIG
EKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQGPKGQRGS
RGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDR
GLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPG
LRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGP
EGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLM
GPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGER
GEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSG
KPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGP
PGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEY
GVQGLTGFQGFPGPKGPEGDAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRG
EKGFRGETKQMDINAAIQALIESNTALQMESYQNTEVTLIDHSEEIFKTLNYLSNLLH
SIKNPLGTRDNPARICKDLLNCEQKVSDGKYWIDPNLGCPSDAIEVFCNFSAGGQTCL
PPVSVTKLEFGVGKVQMNFLHLLSSEATHIITIHCLNTPRWTSTQTSGPGLPIGFKGW
NGQIFKVNTLLEPKVLSDDCKIQDGSWHKATFLFHTQEPNQLPVIEVQKLPHLKTERK
YYIDSSSVCFL"
BASE COUNT 1789 a 1036 c 1301 g 1700 t
ORIGIN
1 ttactattta tctaaataca tacagaaact gaaaagaaaa tttgtgtaga ctttgaaagt
61 ttatttcagt gatcactcat gatgaatatt aggtttcagt gcttaaaatc accactattc
121 aatagaaatg caacatgaac tgcaaatatg agccacatta gtgaaaagaa agaagtaaaa
181 ttaatttaat agtatatttt atttaactca agatatccaa atattatatc ctttcaacat
241 gtaatcaata ttgaaattat taatgagatg ttttctattc ttgttttgta gaaagtcttt
301 gaagtctgat gtatttttta tacttacatc acatttcaat tcagaccagc ctatttcaaa
361 tattcagtag ccacatgtca ttattggcta caatattttt cagtatctta acatcttact
421 gttctacact ggaatataat tattactgtt tagacagtaa ttgattactt ttagacataa
481 catatttaat ctgtttctgt acactaaatg tatattgctc ttagagtcag tctctgttgt
541 actttgaact taatctttta cctttcgtta atctatacct ttgctgatgc cattcctcac
601 cactaaaaat gacgctttct cattaccagt gttaagtatc acatattttt cagggcccca
661 cttacagttt catattccat tatttgaaat cattaatgtt tggatttttg aaaagtaata
721 tgttgcatat gctgtatttt atttaccact accagaaggg tgtgggacag cataccataa
781 ttagatatat taatatttct gtagtgaaat gtaaggacgt ttagattaat tggaataaat
841 caagactata aatggcctta ttcagaacaa aataagcttt actgccaaat caatccaagt
901 taggtcaagt ttgccaccaa atgagttgtg gaaaactgag ttttcagaga tttatggatt
961 gcaaaatttt gtttcagagg ttatgaacat gcattacttc tccagtgatg ccagctctag
1021 ctgctccagt tcacagggtg cctgctccta agacctcctt tagtacttaa cctgtggcat
1081 gtattctgtt ctatttgagc aaatagaaca tccctgtggg aaagacttta attttattct
1141 tcttaatatc tttcacagtg cttactactc tgccttttac agagtacacc tcaataaaga
1201 ttttattttt aaaaatttta ttgataaaag tgattaaaag tcacgaatag gagaatattt
1261 tttaagaaaa tagattatta cctgatatgg tttggatttg tgtccctgcc caactctcat
1321 gtcaaactgg aggagggacc tagtgggaag cgattggctc attggggctt atttccgcct
1381 tgctattctt gggatagcga gtgagttctc acgagatctg acagtttaaa cgtgtgtggc
1441 acttcaccct ttgctctcac tctctcctgc tccaacatgt gaagttgtgc ttgcttcccc
1501 tttaccttcc atcatgattg taagcttcct gaggcctccc agtcatgctt ggtgttaaac
1561 cgtggaactg tgagttaatt aaacctcttt tcttcataaa ttacccagtc tcaggtagtt
1621 ctttatagca gtgtgagaac agactgatac gttactattt gaatgaaaat agagggtagg
1681 ccacatttca tagaaatact ataacagagt ttttaaaaat ttttatttta agttctgggg
1741 tacatgtgca ggatgtgtag atttgttata taggtaaaca tgtgccatgg tggtttgctc
1801 cacttataac aaagttttaa gtaactgaaa tttcctttgc ctttttctag gttatgacta
1861 gataattaca ttaaaaagga aaattgaaac tgtcatgaat aatctagttt gaaaaataac
1921 tgtttttgca actttatatt cttttttgac agggagaagt aggagatcaa ggaaatattg
1981 gaaaattggt gaaacaggac ctgttggctt acctggagaa gttgggatga ctggaagcat
2041 tggcgaaaag ggagaacgtg gaagtccagg cccactaggt ccgcagggag aaaaaggtgt
2101 tatgggatat ccaggtcctc ctggggttcc aggacctatc ggtccattgg gattacctgg
2161 tcatgtgggg gcaagaggac cacctgggag tcaaggtcct aaaggacaaa gaggatcaag
2221 aggaccagat ggtctcttag gggaacaagg tatacaaggt gccaagggtg aaaaaggaga
2281 tcaaggaaaa agagggcctc atggtcttat tggtaagact ggaaaccctg gagaaagagg
2341 atttcaaggg aaaccaggtt tacagggatt gcctggaagt acaggtgaca gaggacttcc
2401 aggagagcca ggactgcgag gactgcaagg tgatgttgga cctcctggag aaatgggcat
2461 ggagggacct ccaggcactg agggagagtc tggtctgcaa ggtgaaccag gtgcaaaggg
2521 agatgttgga actgctggca gtgttggagg aactggggaa ccaggtttac ggggtgaacc
2581 aggagctcct ggagaagaag gtctccaggg aaaagatggg ttaaagggag taccaggagg
2641 aaggggactt cctggagagg atggagaaaa aggagagatg ggcttaccag gaattatagg
2701 acccttgggt agatcaggcc aaacaggcct tccgggacct gaaggaattg tgggaattcc
2761 agggcaaaga ggtcgtccag gaaaaaaggg tgataaagga caaataggac ccacaggaga
2821 agttggaagc agaggtcctc ctggaaaaat tgggaaaagt ggtcctaagg gtgccagagg
2881 aactagaggt gctgtgggac atttaggatt gatgggacct gatggagaac caggaattcc
2941 agggtacagg ggccatcagg gccaaccagg accctctgga ttgccaggac ctaaaggaga
3001 aaagggctac ccaggagaag atagcacagt cctaggacca cctgggcctc gaggtgaacc
3061 aggtccagtg ggggaccaag gagagagagg agagcctgga gcagagggat ataagggcca
3121 tgtgggtgta ccaggactaa gaggtgccac tggacaacaa ggacccccag gcgaaccagg
3181 tgaccagggt gaacaaggac taaaaggaga gagaggatct gaaggtaata aggggaaaaa
3241 aggagctcct ggtccttctg ggaaacctgg gattcctgga cttcaaggcc tacttgggcc
3301 aaaaggcata caaggatacc atggagcaga tggcatttca ggaaaccctg gaaaaattgg
3361 gccaccagga aaacagggac ttcctggcat cagaggcggc ccaggaagaa caggtcttgc
3421 tggggctcca ggtcctccag gagtaaaggg ttcatcaggc ttgccaggaa gcccaggaat
3481 tcaaggccca aagggtgaac aagggctacc tggtcaacct ggaattcaag gtaaaagagg
3541 tcaccgagga gcacaaggtg atcaaggacc atgtggagac cctggcctga aagggcagcc
3601 tggagaatat ggtgttcaag gtttgacagg tttccaagga ttcccaggcc ctaaaggtcc
3661 tgaaggggat gctggcattg ttgggatatc aggtcctaaa ggtcctattg gacacagagg
3721 aaacactggt ccccttggca gagaaggtat aataggccca acaggtagaa ctggacccag
3781 aggtgaaaag ggctttagag gtgaaactaa gcaaatggat atcaatgctg ctattcaagc
3841 cttgattgaa tcaaatactg ccctacagat ggagagctac cagaatactg aagtgacttt
3901 aattgaccac agtgaagaga tattcaaaac cctgaactac cttagcaatt tattgcacag
3961 catcaagaat cctcttggca cacgagataa cccagcacga atctgcaaag atttacttaa
4021 ctgtgaacaa aaagtatcag atggaaaata ctggattgac ccaaatcttg gctgtccttc
4081 agatgccatt gaggttttct gcaatttcag tgctggtggc cagacatgct tacctcctgt
4141 ttctgtaaca aagttggagt ttggagttgg gaaagtccag atgaacttcc ttcatttact
4201 gagttcggaa gccacccata tcatcaccat tcactgtcta aacaccccaa ggtggacaag
4261 cacacaaaca agtggcccag gattgcctat tggtttcaag ggatggaatg gccagatttt
4321 taaagtaaac actctacttg aacctaaagt gctttcagat gactgcaaga ttcaagatgg
4381 cagctggcat aaggcaacat ttctttttca cacccaggaa cctaatcaac ttccagtgat
4441 tgaagtacaa aaacttcctc atctcaaaac tgaacgaaag tattacattg acagcagttc
4501 tgtatgcttt ctgtaaagtc tctgaattag ttccgaattc aggctgttgg ccaggtaatt
4561 gctgcagagg gagaaataag acagacagat acagtcatta tgaaatgcat gtaataaagc
4621 attggctaaa tcttaaagaa tctcaggaag aacagacttc ctcctaagaa ggagaaaagg
4681 catttttaaa ggactatgat tgataaagta tttaattctt ttaaaaatta tattcatctc
4741 agctttctta gagaattccc tagaactaaa aatttataaa tatggaattc ttcagggtat
4801 cttatatttt tgactgagtg cgtagtaccc attagacagc tggagatgca gagcactatg
4861 gagcaatact ggctaatgct tccagatgtg cactgcttct gtctaaaaat tacaagccac
4921 agtctaatat gtcttatttt ccaaaacact aagctgtatt caggtccccg atgggcatat
4981 acatcttagc cggtgataca ctacctctta cgtgttgcct ctttgtgttg cttggtgctc
5041 tttcgaaaac aaggtgctta tggctttcat agactatttc ctttttcatc tttgtcattc
5101 tttaaaagtg tatgtactgg ttacatcaag atatgttttg gttgttagta cttattttaa
5161 tttgtttggt cacacactta ataacacgtg aaactattta tgtgaagtcc ttgttttatt
5221 ttaaaattct ctttgtgtat ttggaatcaa agccagcaca ttgtaacctg tgcttgtacg
5281 caaaagaatt agatttcttt gtttttgttt tattttttaa attgttgtaa aaattattat
5341 aggccagcta catctagtag taggtttggg gtacagattg ggggttgtgc catactgttt
5401 ttaaagttca tgatcatctg gaatgatact tagtgtatat atattttgta aagttttaat
5461 tcagcaaatt ttttgaaatt gctgctgttt taaattataa aacctttata tttctgcttt
5521 gtagaaatta tatgttttgt agtattcatt gattttcttt cactgtactt aaatttagtg
5581 ttagtacttt aaaattttta atttaccagt ctttaaagca acatccagaa aaaaaaagtc
5641 ttttcccatt taaaataggc tcagccagtt caatgtctcc ttgttatcag agaaatgtta
5701 gttcaatact gaaagaaaaa tattatacct cttggtatct agaaaagctt gttcatccat
5761 tataaatata tctttagcca cagcaaacca cacttaacct atctataata aaaatgtgct
5821 ttaaat
//