LOCUS AB209645 5681 bp mRNA linear HUM 17-NOV-2007 DEFINITION Homo sapiens mRNA for alpha 1 type VII collagen precursor variant protein. ACCESSION AB209645 VERSION AB209645.1 KEYWORDS FLI_CDNA. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5681) AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A., Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F. TITLE Direct Submission JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases. Contact:Osamu Ohara Kazusa DNA Research Institute, Department of Human Gene Research; 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan URL :http://protein.gsc.riken.go.jp/ REFERENCE 2 AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A., Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F. TITLE Homo sapiens protein coding cDNA JOURNAL Published Only in Database(2005) COMMENT This work was supported in part by the National Project on Protein Structural and Functional Analysis , Ministry of Education, Culture , Sports, Science and Technology of Japan. Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S. RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan. URL: http://protein.gsc.riken.go.jp/ FEATURES Location/Qualifiers source 1..5681 /clone="sh06218" /db_xref="H-InvDB:HIT000329580" /db_xref="taxon:9606" /mol_type="mRNA" /note="this clone is also named as hsk003001872" /note="vector:pBluescriptII SK plus" /organism="Homo sapiens" /tissue_type="spleen" CDS <1..3084 /codon_start=1 /inference="non-experimental evidence, no additional details recorded" /note="Start codon is not identified." /product="alpha 1 type VII collagen precursor variant" /protein_id="BAD92882.1" /translation="GLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDR GERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGS PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPE GPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL VLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVG EKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGD RGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGP PGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLP GLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREG RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLP GERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSG EQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPG LPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGP GLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERG MAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGR GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG VPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRG LPGPRGEKGEAGRAGEPGDPGEDVSPGPRQGRAWPEECDGGHKGPLLGRGTCLSP" BASE COUNT 1051 a 1596 c 2105 g 929 t ORIGIN 1 gggcttcctg ggcggaaagg ggaccctgga ccatcgggcc cccctggacc tcgtggacca 61 ctgggggacc caggaccccg tggcccccca gggcttcctg gaacagccat gaagggtgac 121 aaaggcgatc gtggggagcg gggtccccct ggaccaggtg aaggtggcat tgctcctggg 181 gagcctgggc tgccgggtct tcccggaagc cctggacccc aaggccccgt tggcccccct 241 ggaaagaaag gagaaaaagg tgactctgag gatggagctc caggcctccc aggacaacct 301 gggtctccgg gtgagcaggg cccacgggga cctcctggag ctattggccc caaaggtgac 361 cggggctttc cagggcccct gggtgaggct ggagagaagg gcgaacgtgg acccccaggc 421 ccagcgggat cccgggggct gccaggggtt gctggacgtc ctggagccaa gggtcctgaa 481 gggccaccag gacccactgg ccgccaagga gagaaggggg agcctggtcg ccctggggac 541 cctgcagtgg tgggacctgc tgttgctgga cccaaaggag aaaagggaga tgtggggccc 601 gctgggccca gaggagctac cggagtccaa ggggaacggg gcccacccgg cttggttctt 661 cctggagacc ctggccccaa gggagaccct ggagaccggg gtcccattgg ccttactggc 721 agagcaggac ccccaggtga ctcagggcct cctggagaga agggagaccc tgggcggcct 781 ggccccccag gacctgttgg cccccgagga cgagatggtg aagttggaga gaaaggtgac 841 gagggtcctc cgggtgaccc gggtttgcct ggaaaagcag gcgagcgtgg ccttcggggg 901 gcacctggag ttcgggggcc tgtgggtgaa aagggagacc agggagatcc tggagaggat 961 ggacgaaatg gcagccctgg atcatctgga cccaagggtg accgtgggga gccgggtccc 1021 ccaggacccc cgggacggct ggtagacaca ggacctggag ccagagagaa gggagagcct 1081 ggggaccgcg gacaagaggg tcctcgaggg cccaagggtg atcctggcct ccctggagcc 1141 cctggggaaa ggggcattga agggtttcgg ggacccccag gcccacaggg ggacccaggt 1201 gtccgaggcc cagcaggaga aaagggtgac cggggtcccc ctgggctgga tggccggagc 1261 ggactggatg ggaaaccagg agccgctggg ccctctgggc cgaatggtgc tgcaggcaaa 1321 gctggggacc cagggagaga cgggcttcca ggcctccgtg gagaacaggg cctccctggc 1381 ccctctggtc cccctggatt accgggaaag ccaggcgagg atggcaaacc tggcctgaat 1441 ggaaaaaacg gagaacctgg ggaccctgga gaagacggga ggaagggaga gaaaggagat 1501 tcaggcgcct ctgggagaga aggtcgtgat ggccccaagg gtgagcgtgg agctcctggt 1561 atccttggac cccaggggcc tccaggcctc ccagggccag tgggccctcc tggccagggt 1621 tttcctggtg tcccaggagg cacgggcccc aagggtgacc gtggggagac tggatccaaa 1681 ggggagcagg gcctccctgg agagcgtggc ctgcgaggag agcctggaag tgtgccgaat 1741 gtggatcggt tgctggaaac tgctggcatc aaggcatctg ccctgcggga gatcgtggag 1801 acctgggatg agagctctgg tagcttcctg cctgtgcccg aacggcgtcg aggccccaag 1861 ggggactcag gcgaacaggg ccccccaggc aaggagggcc ccatcggctt tcctggagaa 1921 cgcgggctga agggcgaccg tggagaccct ggccctcagg ggccacctgg tctggccctt 1981 ggggagaggg gcccccccgg gccttccggc cttgccgggg agcctggaaa gcctggtatt 2041 cccgggctcc caggcagggc tgggggtgtg ggagaggcag gaaggccagg agagagggga 2101 gaacggggag agaaaggaga acgtggagaa cagggcagag atggccctcc tggactccct 2161 ggaacccctg ggccccccgg accccctggc cccaaggtgt ctgtggatga gccaggtcct 2221 ggactctctg gagaacaggg accccctgga ctcaagggtg ctaaggggga gccgggcagc 2281 aatggtgacc aaggtcccaa aggagacagg ggtgtgccag gcatcaaagg agaccgggga 2341 gagcctggac cgaggggtca ggacggcaac ccgggtctac caggagagcg tggtatggct 2401 gggcctgaag ggaagccggg tctgcagggt ccaagaggcc cccctggccc agtgggtggt 2461 catggagacc ctggaccacc tggtgccccg ggtcttgctg gccctgcagg accccaagga 2521 ccttctggcc tgaaggggga gcctggagag acaggacctc caggacgggg cctgactgga 2581 cctactggag ctgtgggact tcctggaccc cccggccctt caggccttgt gggtccacag 2641 gggtctccag gtttgcctgg acaagtgggg gagacaggga agccgggagc cccaggtcga 2701 gatggtgcca gtggaaaaga tggagacaga gggagccctg gtgtgccagg gtcaccaggt 2761 ctgcctggcc ctgtcggacc taaaggagaa cctggcccca cgggggcccc tggacaggct 2821 gtggtcgggc tccctggagc aaagggagag aagggagccc ctggaggcct tgctggagac 2881 ctggtgggtg agccgggagc caaaggtgac cgaggactgc cagggccgcg aggcgagaag 2941 ggtgaagctg gccgtgcagg ggagcccgga gaccctgggg aagatgtgag tccggggcct 3001 aggcaagggc gagcctggcc tgaggagtgt gatggcgggc ataaggggcc actcttgggc 3061 cggggcacat gtctgagccc ctgagtcggg ctgcatgtcc caacatccag gagcctgctc 3121 tctggatcac agggagccac acactgtcgg cttccacact ctgagctctg ggggccctgt 3181 cttggcttct gtgtgcccat ccttggtctg tttctcacca catctgggca cacgtgtgct 3241 ctggtctgat ctcccagatc ccaggacaca cctgagttct tgtgaacctc tccttggtcc 3301 tgtgtttaca atcctccttt cccctgcccc tggctgccag cgttcagcct gtggccatgc 3361 ctgctctacc cgggagtgga cgtgttgggg ttcccctctg agcgcccgtg tgtccgcact 3421 cacgtctgtg gagccagatg tctgcactcg cgtgtgggct ccctgtgcct gtgccatgcc 3481 tgaactccca cctgtctatg gtagtatctg agcgtccctc tgtctgtgct gtcctgagat 3541 aggccatggt catgtctgag ctcctgtgag ccaattcttg gtcgcatgtc tgagttccca 3601 tgtgttcatg gtcacatcag aactcccctg ggaatatttt cagcccgtgt ctgaactctg 3661 tgctcatgtt cctaccctct caaatgctgt ttgctgggtt ttcttagggt cagaaagggg 3721 ctccaggacc caaaggtttc aagggtgacc caggagtcgg ggtcccgggc tcccctgggc 3781 ctcctggccc tccaggtgtg aagggagatc tgggcctccc tggcctgccc ggtgctcctg 3841 gtgttgttgg gttcccgggt cagacaggcc ctcgaggaga gatgggtcag ccaggcccta 3901 gtggagagcg gggtctggca ggccccccag ggagagaagg aatcccagga cccctggggc 3961 cacctggacc accggggtca gtgggaccac ctggggcctc tggactcaaa ggagacaagg 4021 gagaccctgg agtagggctg cctgggcccc gaggcgagcg tggggagcca ggcatccggg 4081 gtgaagatgg ccgccccggc caggagggac cccgaggact cacggggccc cctggcagca 4141 ggggagagcg tggggagaag ggtgatgttg ggagtgcagg actaaagggt gacaagggag 4201 actcagctgt gatcctgggg cctccaggcc cacggggtgc caagggggac atgggtgaac 4261 gagggcctcg gggcttggat ggtgacaaag gacctcgggg agacaatggg gaccctggtg 4321 acaagggcag caagggagag cctggtgaca agggctcagc cgggttgcca ggactgcgtg 4381 gactcctggg accccagggt caacctggtg cagcagggat ccctggtgac ccgggatccc 4441 caggaaagga tggagtgcct ggtatccgag gagaaaaagg agatgttggc ttcatgggtc 4501 cccggggcct caagggtgaa cggggagtga agggagcctg tggccttgat ggagagaagg 4561 gagacaaggg agaagctggt cccccaggcc gccccgggct ggcaggacac aaaggagaga 4621 tgggggagcc tggtgtgccg ggccagtcgg gggcccctgg caaggagggc ctgatcggtc 4681 ccaaggggcc acctggcagt gttggtccca gaggccccga aggacttcag ggccagaagg 4741 gtgagcgagg tccccccgga gagagagtgg tgggggctcc tggggtccct ggagctcctg 4801 gcgagagagg ggagcagggg cggccagggc ctgccggtcc tcgaggcgag aagggagaag 4861 ctgcactgac ggaggatgac atccggggct ttgtgcgcca agagatgagt cagcactgtg 4921 cctgccaggg ccagttcatc gcatctggat cacgacccct ccctagttat gctgcagaca 4981 ctgccggctc ccagctccat gctgtgcctg tgctccgcgt ctctcatgca gaggaggaag 5041 agcgggtacc ccctgaggat gatgagtact ctgaatactc cgagtattct gtggaggagt 5101 accaggaccc tgaagctcct tgggatagtg atgacccctg ttccctgcca ctggatgagg 5161 gctcctgcac tgcctacacc ctgcgctggt accatcgggc tgtgacaggc agcacagagg 5221 cctgtcaccc ttttgtctat ggtggctgtg gagggaatgc caaccgtttt gggacccgtg 5281 aggcctgcga gcgccgctgc ccaccccggg tggtccagag ccaggggaca ggtactgccc 5341 aggactgagg cccagataat gagctgagat tcagcatccc ctggaggagt cggggtctca 5401 gcagaacccc actgtccctc cccttggtgc tagaggcttg tgtgcacgtg agcgtgcgtg 5461 tgcacgtccg ttatttcagt gacttggtcc cgtgggtcta gccttccccc ctgtggacaa 5521 acccccattg tggctcctgc caccctggca gatgactcac tgtggggggg tggctgtggg 5581 cagtgagcgg atgtgactgg cgtctgaccc gccccttgac ccaagcctgt gatgacatgg 5641 tgctgattct ggggggcatt aaagctgctg ttttaaaagg c //