LOCUS AB209178 4774 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for protocadherin gamma subfamily A, 6 isoform 1
precursor variant protein.
ACCESSION AB209178
VERSION AB209178.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4774)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..4774
/clone="fj00292"
/db_xref="H-InvDB:HIT000329113"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000898"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <117..2969
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="protocadherin gamma subfamily A, 6 isoform 1
precursor variant"
/protein_id="BAD92415.1"
/translation="CRSVLPLLNPREVPNKPVMAPPQRHPQRSEQVLLLTLLGTLWGA
AAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNPRNGSL
VTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEVKI
LENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTL
DREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVG
TPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYE
LGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDR
DSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL
STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYS
LAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSL
SLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSY
RLLKASEPGLFSVGLHTGEVRMARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV
ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKS
RLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLI
NQESYEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY
IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1078 a 1410 c 1248 g 1038 t
ORIGIN
1 gcaaattaga cgggaaagca ggaaagctgt gcagaaattc tgacctgaaa cgcttcgcat
61 ccggtctctg cttgttgaag gaccttcacc gctatttctg agaagagcaa aagtgatgca
121 gatctgttct tcctcttctt aatcccagag aagttcctaa taagccagta atggcgcctc
181 cgcagaggca tccgcagcgc agcgagcagg tcctgctcct cacgctcctg gggacgctgt
241 ggggggccgc ggcagcgcag atccgctact ctattcccga ggagctggag aaaggctcct
301 tcgtaggcaa catcgtcaag gatctgggac tggagcccca ggagttggcg gagcacggag
361 tccgcatcgt ctccagaggt aggatgcagc ttttctctct gaatccgcga aacggcagct
421 tggtcaccgc gggtaggata gaccgcgagg agctctgtgc tcagagcccg cggtgtctgg
481 tgagttttaa catccttgtc gaggataaac tgaatcttta tcccgtggaa gtggaaatag
541 tggacattaa tgacaataca ccccgattct taaaggaaga attggaagtg aaaattctcg
601 aaaacgcagc tccatcctct cgttttccac taatggaggt ctatgaccct gatgtgggaa
661 tgaactccct tcagggattt aagctcagtg gtaatagtca cttctcagtg gacgtgcaaa
721 gcgaagccca tgggcccaag tacccggagc tggtgctgga gggcacactg gaccgggaag
781 gagaagccgt ttaccgcctg gtccttactg ccatggatgg cggcgaccct gtccgctcaa
841 gcgtcgccca aattctggta acagttctag atgtgaatga caacactcca atgtttactc
901 agcctgtcta ccgtgtaagt gttcctgaaa acctgccagt aggcacacca gtgttggcag
961 tgactgccac cgaccaggat gaaggagtcc acggggaagt aacttattcc tttgtgaaga
1021 ttacagaaaa gatctcacaa attttctgtt tgaatgtttt gactggagaa atttcaactt
1081 ctgcaaatct agactatgag gactcgagtt tttatgagct gggtgttgaa gcccgggatg
1141 ggccaggtct tcgagacaga gcgaaagtct taataactat cttggatgtc aatgataatg
1201 taccagaagt ggttgttaca tctggaagca gaacaattgc tgaaagtgca cctccaggaa
1261 cagtaatcgc cctttttcaa gtgttcgatc gagactctgg cctgaatggc ctggtaacct
1321 gttccatccc gagaagtctc ccatttgaat tggaaaaatc agttggcaat tattatcgat
1381 tagtgacaaa tgcagctcta gaccgggaag aggtattctt gtacaacatc actgtgacag
1441 ccacggacaa aggaacacca cctctgtcta cagaaacaat catctctcta aatgtggcag
1501 acaccaacga caacccgccc accttccccc attcatccta ctcagtctat gtccttgaaa
1561 acaaccccag gggtgcctcc atcttctctg tgaatgcact ggaccctgac gtggaccaga
1621 acgcccaagt ctcctactca ctggcagaag acaccctcca gggggcgccc ctgtcctcct
1681 acgtgtccat caactccgac actgggattc tgtacgccct gcgctccttc gactatgagc
1741 agttgagaga cctacagctg tgggtgacag ccagcgacag cggggacccg cctcttagca
1801 gcaacgtgtc actgagcctg tttgtgctgg accagaatga caatgcgccc gagatcctgt
1861 accccgccct ccccacagac ggttccactg gcgtggagct ggcgccccgc tccgcagagc
1921 ccggctacct ggtgaccaag gtggtggcgg tggacagaga ctcgggccag aacgcctggc
1981 tgtcctaccg cctgctcaag gccagcgagc caggactttt ctcagtgggc ctgcacacgg
2041 gcgaggtgcg catggcgcgc gccctgctgg acagagacgc gctcaagcag agcctagtgg
2101 tggccgtcca ggaccacggc cagccccctc tctccgccac tgtcacgctc accgtggccg
2161 tggccgacag gatccccgac atcctggccg acctgggcag cctcgagccc tccgccaaac
2221 ccaacgattc ggacctcact ctgtacctgg tggtggcggt ggccgcggtc tcctgcgtct
2281 tcctggcctt cgtcatcgtg ctgctggcgc tcagactgca gcgctggcac aagtcacgcc
2341 tgctgcaggc ttcgggaggt ggcttagcga gcatgcccgg ctcgcacttt gtgggcgtgg
2401 aaggggttcg ggctttcctg cagacctatt cccacgaggt ctcactcact gcagactcgc
2461 gtaagagtca tctgattttc ccccagccca actatgccga cacgcttatc aaccaggaga
2521 gctatgagaa aagcgagcct cttctgataa ctcaggattt acttgaaacg aaaggagaac
2581 ccaggcaact tcagcaagcc ccgcccaaca cggactggcg tttctctcag gcccagagac
2641 ccggcaccag cggctcccaa aatggcgatg acaccggcac ctggcccaac aaccagtttg
2701 acacagagat gctgcaagcc atgatcttgg cgtccgccag tgaagctgct gatgggagct
2761 ccaccctggg agggggtgcc ggcaccatgg gattgagcgc ccgctacgga ccccagttca
2821 ccctgcagca cgtgcccgac taccgccaga atgtctacat cccaggcagc aatgccacac
2881 tgaccaacgc agctggcaag cgggatggca aggccccagc aggtggcaat ggcaacaaga
2941 agaagtcggg caagaaggag aagaagtaac atggaggcca ggccaagagc cacagggcag
3001 cctctcccca accagcccag cttctcctta cctgcaccca ggcctcagag tttcagggct
3061 aacccccaga atactggtag gggccaaggc catgctcccc ttgggaaaca gaaacaagtg
3121 cccagtcagc acctacccct tcccccccag ggggttgaat atgcaaaagc agttccgctg
3181 ggaaccccca tccaatcaac tgctgtaccc atgggggtag tggggttact gtagacacca
3241 agaaccattt gccacacccc gtttagttac agctgaactc ctccatcttc caaatcaatc
3301 aggcccatcc atcccatgcc tccctcctcc ccaccccact ccaacagttc ctctttcccg
3361 agtaaggtgg ttggggtgtt gaagtaccaa gtaacctaca agcctcctag ttctgaaaag
3421 ttggaagggc atcatgacct cttggcctct cctttgattc tcaatcttcc cccaaagcat
3481 ggtttggtgc cagccccttc acctccttcc agagcccaag atcaatgctc aagttttgga
3541 ggacatgatc accatcccca tggtactgat gcttgctgga tttagggagg gcattttgct
3601 accaagcctc ttcccaacgc cctggggacc agtcttctgt tttgtttttc attgtttgac
3661 gtttccactg catgccttga cttcccccac ctcctcctca aacaagagac tccactgcat
3721 gttccaagac agtatggggt ggtaagataa ggaagggaag tgtgtggatg tggatggtgg
3781 gggcatggac aaagcttgac acatcaagtt atcaaggcct tggaggaggc tctgtatgtc
3841 ctcaggggac tgacaacatc ctccagattc cagccataaa ccaataacta ggctggaccc
3901 ttcccactac ataatagggc tcagcccagg cagccagctt tgggctgagc taacaggacc
3961 aatggattaa actggcattt cagtccaagg aagctcgaag caggtttagg accaggtccc
4021 cttgagaggt cagaggggcc tctgtgggtg ctgggtactc cagaggtgcc actggtggaa
4081 gggtcagcgg agccccagca ggaagggtgg gccagccagg ccattcttag tccctgggtt
4141 ggggaggcag ggagctaggg cagggaccaa atgaacagaa agtctcagcc caggatgggg
4201 cttcttcaac agggcccctg ccctcctgaa gcctcagtcc ttcaccttgc caggtgccgt
4261 ttctcttccg tgaaggccac tgcccaggtc cccagtgcgc cccctagtgg ccatagcctg
4321 gttaaagttc cccagtgcct ccttgtgcat agaccttctt ctcccacccc cttctgcccc
4381 tgggtccccg gccatccagc ggggctgcca gagaacccca gacctgccct tacagtagtg
4441 tagcgccccc tccctctttc ggctggtgta gaatagccag tagtgtagtg cggtgtgctt
4501 ttacgtgatg gcgggtgggc agcgggcggc gggctccgcg cagccgtctg tccttgatct
4561 gcccgcggcg gcccgtgttg tgttttgtgc tgtgtccacg cgctaaggcg accccctccc
4621 ccgtactgac ttctcctata agcgcttctc ttcgcatagt cacgtagctc ccaccccacc
4681 ctcttcctgt gtctcacgca agttttatac tctaatattt atatggcttt ttttcttcga
4741 caaaaaaata ataaaacgtt tcttctgaaa agct
//