LOCUS AB209175 5137 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for collagen, type V, alpha 3 preproprotein
variant protein.
ACCESSION AB209175
VERSION AB209175.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5137)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..5137
/clone="ah01636"
/db_xref="H-InvDB:HIT000329110"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000892"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..4977
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="collagen, type V, alpha 3 preproprotein variant"
/protein_id="BAD92412.1"
/translation="ENFSLLITLRGQPANQSVLLSIYDERGARQLGLALGPALGLLGD
PFHPLPQQVNLTDGRWHRVAVSIDGEMVTLVADCEAQPPVLGHGPRFISIAGLTVLGT
QDLGEKTFEGDIQELLISPDPQAAFQACERYLPDCDNLAPAATVAPQGEPETPRPRRK
GKGKGRKKGRGRKGKGRKKNKEIWTSSPPPDSAENQTSTDIPKTETPAPNLPPTPTPL
VVTSTVTTGLNATILEGSLDPDSGTELGTLETKAAREDEEGDDSTMGPDFRAAEYPSR
TQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGPP
GPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKG
PPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGA
RGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQA
GEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPG
PQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGP
RGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQA
GQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPG
LEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGP
PGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPP
GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPG
PVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSPGERGPPGPTGKDGIPGP
LGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGAD
GAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPG
PRGPQGPTGSEGTPGLPGGVGQPGAVGEKGEPGDAGDPGPPGAPGIPGPKGDIGEKGD
SGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDV
GGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARG
PPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGL
IGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSK
GSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVVEGGLEEVLASLTSL
SLELEQLRRPPGTAERPGLVCHELHRNHPHLPDGEYWIDPNQGCARDSFRVFCNFTAG
GETCLYPDKKFEIVKLASWSKEKPGGWYSTFRRGKKFSYVDADGSPVNVVQLNFLKLL
SATARQNFTYSCQNAAAWLDEATGDYSHSARFLGTNGEELSFNQTTAATVSVPQDGCR
LRKGQTKTLFEFSSSRAGFLPLWDVAATDFGQTNQKFGFELGPVCFSS"
BASE COUNT 1016 a 1519 c 1799 g 803 t
ORIGIN
1 gagaacttct ccttgctgat caccttgcgg ggacagccag ccaatcagtc tgtcctgctg
61 tccatttatg atgaaagggg tgcccggcag ttgggcctgg cactggggcc agcgctgggt
121 ctcctaggtg accccttcca ccccctcccc cagcaggtca acctcacaga tggcaggtgg
181 caccgtgtgg cagtcagcat agatggtgag atggtgaccc tggtagctga ctgtgaagct
241 cagccccctg ttttgggcca tggcccccgc ttcatcagca tagctggact cactgtgctg
301 gggacccagg accttgggga aaagactttc gagggagaca ttcaggagct gctgataagc
361 ccagatcctc aggctgcctt ccaggcttgt gagcggtacc tccccgactg tgacaacctg
421 gcaccggcag ccacagtggc tccccagggt gaaccagaaa cccctcgtcc tcggcggaag
481 gggaagggaa aagggaggaa gaaagggcga ggtcgcaagg ggaagggcag gaaaaagaac
541 aaggaaattt ggacctcaag tccacctcct gactccgcag agaaccagac ctccactgac
601 atccccaaga cagagactcc agctccaaat ctgcctccga cccccacgcc tttggtcgtc
661 acctccactg tgactactgg actcaatgcc acgatcctag aggggagctt ggaccctgac
721 agtggaaccg agctggggac cctggagacc aaggcagcca gggaggatga agaaggagat
781 gattccacca tgggccctga cttccgggca gcagaatatc catctcggac tcagttccag
841 atctttcctg gtgctggaga gaaaggagca aaaggagagc ccgcagtgat tgaaaagggg
901 cagcagtttg agggacctcc aggagcccca ggaccccaag gggtggttgg cccctcaggc
961 cctcccggcc ccccaggatt ccctggcgac cctggtccac cgggccctgc tggcctccca
1021 ggaatccccg gcattgatgg gatccgaggc ccaccgggca ctgtgatcat gatgccgttc
1081 cagtttgcag gcggctcctt taaaggcccc ccagtctcat tccagcaggc ccaggctcag
1141 gcagttctgc agcagactca gctgtctatg aaaggccccc ctggtccagt ggggctcact
1201 gggcgcccag gccctgtggg tctccccggg catccaggtc tgaaaggaga ggagggagca
1261 gaagggccac agggtccccg aggcctgcag ggacctcatg gaccccctgg ccgagtgggc
1321 aagatgggcc gccctggagc agatggagct cggggcctcc caggggacac tggacctaag
1381 ggtgatcgtg gcttcgatgg cctccctggg ctgcctggtg agaagggcca aaggggtgac
1441 tttggccatg tggggcaacc cggtccccca ggagaggatg gtgagagggg agcagaggga
1501 cctccagggc ccactggcca ggctggggag ccgggtccac gaggactgct tggccccaga
1561 ggctctcctg gccccacggg tcgcccgggt gtgactggaa ttgatggtgc tcctggtgcc
1621 aaaggcaatg tgggtcctcc aggagaacca ggccctccgg gacagcaggg aaaccatggg
1681 tcccagggac tccccggtcc ccagggactc attggcactc ctggggagaa gggtccccct
1741 ggaaacccag gaattccagg cctcccagga tccgatggcc ctctgggtca cccaggacat
1801 gagggcccca cgggagagaa aggggctcag ggtccaccag ggtcggcagg ccctccgggc
1861 tatcctggac ctcggggagt gaagggcact tcaggcaacc ggggcctcca gggggagaaa
1921 ggcgagaagg gagaggacgg cttcccaggc ttcaagggcg atgtggggct caaaggtgat
1981 caggggaaac ccggagctcc aggtccccgg ggagaggatg gtcctgaggg gccgaagggg
2041 caggcggggc aggctggcga ggaggggccc ccaggctcag ctggggagaa gggcaagctt
2101 ggggtgccag gcctcccagg ttatccagga cgccctggac ctaagggatc tattggattt
2161 cccggtcccc tgggacccat aggagagaaa gggaagtcgg gaaagacagg gcagccaggc
2221 ctggaaggag agcggggacc accaggttcc cgtggagaga gggggcaacc gggtgccaca
2281 gggcaaccag gccccaaggg cgatgtgggc caggatggag cccctgggat ccctggagaa
2341 aagggcctcc ctggtctgca aggccctcca ggattccctg ggccaaaggg cccccctggt
2401 caccaaggta aagatgggcg accagggcac cctggacaga gaggagaact gggcttccaa
2461 ggtcagacag gcccgcctgg accagctggt gtcttaggcc ctcagggaaa gacaggagaa
2521 gtgggacctc taggtgaaag ggggcctcca ggcccccctg gacctcctgg tgaacaaggt
2581 cttcctggcc tggaaggcag agagggggcc aagggggaac tgggaccacc aggacccctt
2641 gggaaagaag ggccagctgg actcaggggc tttcccggcc ccaaaggggg ccctggggac
2701 ccgggaccta ctggcttaaa gggtgataag ggccccccag ggcctgtggg ggccaatggc
2761 tcccctggtg agcgcggtcc tttgggccca gcaggaggca ttggacttcc tggccaaagt
2821 ggcagcgaag gccccgttgg ccctgcaggc aagaaggggt ccccgggaga acgtggcccc
2881 cctggcccca ctggcaaaga tgggatccca gggcccctgg ggcctctggg accccctgga
2941 gctgctgggc cttctggcga ggaaggggac aagggggatg tgggtgcccc cggacacaag
3001 gggagtaaag gcgataaagg agacgcgggc ccacctggac aaccagggat acggggtcct
3061 gcaggacacc caggtccccc gggagcagac ggggctcagg ggcgccgggg acccccaggc
3121 ctctttgggc agaaaggaga tgacggagtc agaggctttg tgggggtgat tggccctcct
3181 ggactgcagg ggctgccagg ccctccggga gagaaagggg aggtcggaga cgtcgggtcc
3241 atgggtcccc atggagctcc aggtcctcgg ggtccccaag gccccactgg atcagagggc
3301 actccagggc tgcctggagg agttggtcag ccaggcgccg tgggtgagaa gggtgagcca
3361 ggggacgctg gagacccagg gcctccagga gccccaggca tcccggggcc caagggagac
3421 attggtgaaa agggggactc aggcccatct ggagctgctg gacccccagg caagaaaggt
3481 ccccctggag aggatggagc caaagggagc gtgggcccca cggggctgcc cggagatcta
3541 gggcccccag gagaccctgg agtttcaggc atagatggtt ccccagggga gaagggagac
3601 cctggtgatg ttgggggacc gggtccgcct ggagcttctg gggagcccgg tgcccccggg
3661 ccccccggca agaggggtcc ttcaggccac atgggtcgag aaggcagaga aggggagaaa
3721 ggtgccaagg gggagccagg tcctgatggg cccccaggga ggacgggtcc aatgggggct
3781 agagggcccc ctggacgtgt ggggcctgag ggtcttcgag ggatccctgg ccctgtgggt
3841 gaaccaggcc tcctgggagc tcctggacag atgggccctc ctggccccct ggggccctct
3901 ggcctcccag ggctgaaggg agacactggc cccaaggggg aaaagggcca cattggattg
3961 atcggtctca ttggcccccc gggagaagct ggtgagaaag gagatcaggg gttgccaggc
4021 gtgcagggac cccctggtcc caagggagac cctggtcccc ctggtcccat tggctctctg
4081 ggccaccctg ggcccccagg tgtggcgggc cctctaggac agaaaggctc aaaagggtct
4141 ccggggtcca tgggcccccg tggagacact ggacctgcag gcccaccagg ccccccgggt
4201 gcccctgccg agctgcatgg gctgcgcagg cgccggcgct tcgtcccagt cccgcttcca
4261 gtcgtggagg gcggcctgga ggaggtgctg gcctcgctca catcgctgag cttggagctg
4321 gagcagctgc ggcgtcctcc cggcactgcg gagcgcccgg gcctcgtgtg ccacgagctg
4381 caccgcaacc acccgcacct gcctgatggg gaatactgga ttgaccccaa ccagggctgc
4441 gcgcgggact cgttcagggt tttttgcaac ttcacggcgg gaggagagac ctgcctctat
4501 cccgacaaga agtttgagat cgtgaaattg gcctcctggt ccaaggaaaa gcctggaggc
4561 tggtatagca cattccgtcg agggaagaag ttctcctacg tggacgccga cgggtcccca
4621 gtgaatgtcg tgcagctgaa cttcctgaaa ctgctgagtg ccacagctcg ccagaacttc
4681 acctactcct gccagaatgc agctgcctgg ctggacgaag ccacgggtga ctacagccac
4741 tccgcccgct tccttggcac caatggagag gagctgtctt tcaaccagac gacagcagcc
4801 actgtcagcg tcccccagga tggctgccgg ctccggaaag gacagacgaa gacccttttc
4861 gaattcagct cttctcgagc gggatttctg cccctgtggg atgtggcggc cactgacttt
4921 ggccagacga accaaaagtt tgggtttgaa ctgggccccg tctgcttcag cagctgagag
4981 tgtccggggt gggagggacc gtgagggagc cccagaatgg ggtgcatttg gtgctgaggc
5041 tttgaagcca ccgtattttt cgttacctgt gactatggag ccaatgggat gtgacttcgc
5101 tcatcacggt cagtcattcc ttctcctttc cagggtg
//