LOCUS AB209166 5774 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for major histocompatibility complex, class II,
DR alpha precursor variant protein.
ACCESSION AB209166
VERSION AB209166.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5774)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..5774
/clone="ah00631"
/db_xref="H-InvDB:HIT000329101"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000877"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..697
/codon_start=2
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="major histocompatibility complex, class II, DR
alpha precursor variant"
/protein_id="BAD92403.1"
/translation="PHSRALLTPNRAPKKKMAISGVPVLGFFIIAVLMSAQESWAIKE
EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALA
NIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNV
TWLRNGKPVTTGVSETVFLPREDHLFLTPHLIHFYLTSPIPSPLVGIPNETFFPSLLR
KIIIAYILLYYRV"
BASE COUNT 1908 a 1086 c 1152 g 1628 t
ORIGIN
1 gcctcactcc cgagctctac tgactcccaa cagagcgccc aagaagaaaa tggccataag
61 tggagtccct gtgctaggat ttttcatcat agctgtgctg atgagcgctc aggaatcatg
121 ggctatcaaa gaagaacatg tgatcatcca ggccgagttc tatctgaatc ctgaccaatc
181 aggcgagttt atgtttgact ttgatggtga tgagattttc catgtggata tggcaaagaa
241 ggagacggtc tggcggcttg aagaatttgg acgatttgcc agctttgagg ctcaaggtgc
301 attggccaac atagctgtgg acaaagccaa cctggaaatc atgacaaagc gctccaacta
361 tactccgatc accaatgtac ctccagaggt aactgtgctc acgaacagcc ctgtggaact
421 gagagagccc aacgtcctca tctgtttcat agacaagttc accccaccag tggtcaatgt
481 cacgtggctt cgaaatggaa aacctgtcac cacaggagtg tcagagacag tcttcctgcc
541 cagggaagac caccttttcc ttacccccca cctcatccac ttctacctca cctcacctat
601 accatcccct ttagtaggga taccaaatga gactttcttt cccagtctgc tcagaaaaat
661 tattatagct tatatattac tatattatag agtataaaca ggaagatagt taatactcta
721 ttcattaact atcaagacaa ttgctcaagg cgtaataata caacacactg ccaatgttat
781 aatgtcatgc tgactgattc ttactagtta gtaacaaata tactattttt ttattaagac
841 cccattagat aaatatccat tgtcatactc catgtaagat ttcactaaat ggatcaaact
901 tttggattgt tttttagaca ccactgtaag aaatagcaca gatgaaaaat aatgagctca
961 tttagatagg aagaggctgt tttgccattt cattgaaaaa aaaaaaaaga caaaaatccc
1021 cgccagcagc tccaaaatgg ggttaacctg acccaagtga aatagttaga atttcaggtg
1081 catgcacaac tccccaaagt ttctactcat gtgcacatac ctctggaaaa ccagataaac
1141 cctgcaagtg agacttgatg tagcaagtta ttttccccaa acagaatgcc atatggtgat
1201 ctatgaatca tggaaattcc aggagaagaa cggtgttgtt gtgatgccag aaatctacct
1261 agggagtcac aaaatcccca ctcccacaca ccctcttaaa aatcatgtgg ttcttaaaac
1321 aactggtatg gtagaggaat tcataaccat gtcatatgaa taatgattga aagaactggg
1381 gatattggct gggaaagtaa agactcaagg agaccatgat gactctatat aagtatttga
1441 agggctggct atttaggaaa gggataacat tgttctatac agccttgagg gttaaaactg
1501 gtgttaagtt agggtaaggt aaaaagtttc ctcaaggtgg agacaataag aatgtaccgg
1561 atctagcacc cagtttggca agatgccctc ttggagatgg aagaggcgta gggtgaaggg
1621 agagatatgg gtgagcagat cacagtgaca ctgtgcacac ataggcccct attccaagac
1681 attatgcctt gtggagaaac ccagtgagaa gcaccatggg aaagaccctc acactaggta
1741 tatgtgagtt tgtgtcccta tcgaaatggt tgtagtcgac taaagtaatg accagcaaaa
1801 tccaacattt cctgggaaaa tattccctgt ttgtcagtat ttgggtgagc ctctgacaga
1861 gccctgccag tactgtcatg aaaagtgatc agaaacagtg aaaggtcaga aaatatggaa
1921 gctccttaag aaagtgagaa agaagaaaaa ttaaaacacc atgagcaaat gaacctgcta
1981 gagctgcaaa gcaccccttc acctcccttc acatggttgt taactgtaac gtgcatgccc
2041 atcctcagtg atctgctgat catgtaggga tataacattt gattcggcag gggattatgt
2101 acacatgaga tacatgggag cttattggaa atgcagaatc tcaagtccaa ctccagacct
2161 actgaatcag gaactgattt ttttgaagga acccagtgat ttatatgcac actaacattt
2221 gagaagcaca ggtctgagaa aactgtaggt aaaaaacaat gtgtgatcta ttgagctgag
2281 accctagcag aaagcttaat tcctaggtag ctttctgaca tcacagaggc aagacgaagt
2341 ccctgaaaga agagctggaa agagcagcta tcacaactat acttgaataa aaatgtcttc
2401 attatattga ctccataacg accagccaat ttattgtagt ttttccttct ggaaaaatgc
2461 acaacaaacc tatgatgctt cacctaacac atttatttgt tttatttaca aataaataaa
2521 tacatagttt tatttatttc taatttattt taagggagtg gggacataat agttctcaaa
2581 acaattcgtt tgtttggaga acaaacaaac agaggtggct catgcctcta atcccagcac
2641 tttgggaggc cgagtcaggt ggatcacttg aggtcaggag ttcgagacca gcctggccaa
2701 catggtgaaa ccccgtctct attaaaaaat aacaaaataa actatttatt tagagaacta
2761 ttatgtcccc attcccttaa atcttttctc ctccaagata aacagtgcac tcaagcattt
2821 ctcataatga tatttctgat gttttaaagg ctgcacgaaa atatggccct ccaaacaaga
2881 cacactgcta gagatgtgat caggtgaatt ccaaccactg cgagattatc tgtctcttgg
2941 gaaagatacc tattcagaca gcctaaaagt gcattagctt ctttatatta aattgttcta
3001 taaagtgttc tgatgtttct attctctaaa tcacttgaga gttatttcac aggtatttgg
3061 tctttatacc aaaataatct taaatctaaa tgtgatgatt aaaatattct aggtcaacag
3121 ttccttatgt ctccaacgat ggtgttaatg ttcaattttg aggtcacaga atcctttgtt
3181 taaagaacct ttgaaaaagt tttcttcaac cttctcatct cacagatggg gaaactgagg
3241 cccagaaaag ttagaagact tgctcagaaa gtcccacact gtttagttaa cagagctagt
3301 gctgaagtga aatctgcctt accctggtat attattttca ttacaccata attctctatt
3361 ttaagactta ttacattcaa aaatcaacat gaaaataaat attacaataa accactgaca
3421 gtttccaaat atctagatgt ttggcattta gtcattaaaa ttgatatttt tctgcttttc
3481 agttgtagta taactatttg atattttata tgttgcttta gcagtcattt ggctaacaat
3541 ggaagaaaat acggcctgta agcatgtttt acaagtgaaa taaagtgccc tgaaaaattg
3601 aattagaaat ttagaacatt tcttgttcta aaggtgttca ccactgtttc tccttggact
3661 gactagactg gccatttgaa taagcataga aagaatgatg aagatttaaa aattaccatt
3721 ttgcaatctc cagagtaaaa agtgactcaa ataagaatga tcaatggatg ttaaatctga
3781 ggaggaaggc agtatgggaa taaggtattt acatagcatc aaaatgtcat ccataaatta
3841 caaaagaaaa aaaggaactt ttcaatggct aaattggata acaccttaac taagtcatca
3901 aaatcaacat caccaataat ggacagatgg agcatgtgcc tctggacatg atgctctgaa
3961 aaagagacag cgtcactcag gtaataatca tgccaaaaat gcacaacctg agtctaatta
4021 tgagaaaaca gacaaaccca aaataaaggc tactctataa aataagcaga ttgtgttttt
4081 ccaaaatatc aatgtcatga aaaaacaaga aaaagctgag aagctgttac aaattaaaag
4141 gagaccaaag agatatgaca actaaatgca atatataatc ctagactgga tcttgggcta
4201 ggaaggaaat tgctataagg acacccttgg cacacactat tgaccagaac tcatatatgg
4261 acttttgatc agtattattt ttgtttttac atttttgaac tggatgacta tactgtggct
4321 atgttaaaaa gaaatccttg ttcataggac atacacatac tgtatgaagt gataaaaagc
4381 atggtgtgta tatttaataa tcttatgtgt atgcatgtgt gtgtgtatat atacatagag
4441 agagagggag ggagaaggaa tgaaagataa tgataaagca atacagcaaa atattaaaaa
4501 ctgctaaatc tggggaaagg gtttatggga gtccattgta ctctttttgt aatttttctg
4561 taagcttaag agactatttc aaaataaata atgtgttgga aaaaaagtac attggggcac
4621 tggcagactt ctagatctag gctaggggtg aagggtccag ggaacaggca ggggcagagc
4681 ccaagtcaag ccctgaacag gtcagtgtgg accccactgc tgccttcaca gtacaaagaa
4741 cagcagagct tgcaccctga ctcagcaggc ctgagacact ggttccgcaa ctaccctgct
4801 gctgctgctg ctgcccacag aaaccccatg ttacagcttc aatggctgcc cttactgcca
4861 ggatggactc tctaccatgg ctacttgtct gtgtccaaaa tcctatttca aaatggaggg
4921 cagatacggc tgattggtgg agctgagcca cacgttcata ccggggctcc aagatagtct
4981 gtaaaagtgc atattggctt ctcaccaaga ctgagagtgt gggcaatttc ccaaatgtag
5041 aaagagagtt tagatttggg gaagtttttt ttaagtgaat gtccaccgta acatgttcag
5101 atattgcttg aatgtaaaat agacaccttg gtctctatct tgattgacta gagtccagcc
5161 tggcttgaga gataagagtt gaaaggaaat aattctcttt aagcctgcgt ttatttagta
5221 ctacctgcca ttagagacag gactgtaaga gaatatggta gaactagctt atattggctt
5281 attaaatcat gtagcagaga agagcagaat ggttcctcta tcattgatca atgtccatct
5341 actgctcact cctttttgag atattagaaa gagccatata aagagtttag taattaatta
5401 gggaattaaa atacatatca tataccttaa tgataagaac atctttttcc tccatgtgcg
5461 ggaatttact gtgaaatatt gggcacattc atgtttcata ttcatgcaaa ggatgatgat
5521 aatcaagatg ccctgtgcat ttgagtcatt aatattgata tacagtctct tatataaccc
5581 tttaggaaga tttatgtaag acaaaaagaa agtcttctta agcttgagga aagattaaat
5641 taaaatggaa tcttggaggt ataaaggtct ttagagttca catagcacaa cttggtcatt
5701 tcacatgtga ggaaactgag ggctaggtct tgatggctca gatttcttca attaattgcc
5761 tattcccaaa ttgc
//