LOCUS AB208958 4485 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for protocadherin gamma subfamily A, 7 isoform 1
precursor variant protein.
ACCESSION AB208958
VERSION AB208958.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4485)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..4485
/clone="fj04996"
/db_xref="H-InvDB:HIT000328893"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000357"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..2690
/codon_start=3
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="protocadherin gamma subfamily A, 7 isoform 1
precursor variant"
/protein_id="BAD92195.1"
/translation="ETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRS
GSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEIN
VKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDGTKYPELVLE
RVLDREEERVHHLVFTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENV
PVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA
FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYL
QDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGT
PPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQI
TYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN
MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAW
LSYLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT
VAVADSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRW
HKSRLLQASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVD
MLISQESCEKNDSLLTSVDFQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDT
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1051 a 1307 c 1154 g 973 t
ORIGIN
1 aggagacgga caaagggtcc tttgtgggag acatcgccaa ggacctgggg ctggagcccc
61 gggagctggc ggagcgcgga gtccgcatca tctccagagg taggacgcag cttttcgccc
121 tgaaccagcg cagcggcagc ttggtcactg cgggcaggat agaccgggaa gagatctgcg
181 ctcagagtgc gcggtgtctg gtaaacttta acatcctgat ggaagataaa atgaatcttt
241 accctataga cgtggaaata atagatatta atgacaacgt tccaagattc ttgacggaag
301 aaataaatgt aaaaataatg gagaatacag ctcctggggt tcggtttccg ttaagcgagg
361 ctggggatcc agatgtgggc acgaactccc tccagagtta ccagctcagc cccaatcgcc
421 acttctccct ggctgtgcaa agtggagacg atggaactaa gtacccggaa ctggtgctgg
481 agcgggtgct ggaccgggag gaagagcggg ttcaccacct ggtcttcaca gcctctgatg
541 gcggcgaccc gccccgatcc agcaccgccc acatccaggt gacagtggtg gatgtgaatg
601 accacacgcc tgtcttctct ctgcctcagt accaagtaac tgtccccgag aatgtgccag
661 tgggtacaag actgctcacg gtacatgcta tcgacctgga cgagggagtc aatggggaag
721 tgacatattc ttttcggaaa ataactccta aacttccaaa gatgtttcat ctgaactcgc
781 ttacaggaga aatatcaact ttagaaggat tagattatga agaaactgcc ttctatgaaa
841 tggaggttca ggctcaagat ggtcctggta gtctgacaaa ggcaaaagta ctgatcacag
901 ttttagatgt aaatgataat gctccagaag tgactatgac gtctttaagt agctcaatcc
961 ctgaagacac acctcttggg acagtcattg ctcttttcta cctacaagac agagattctg
1021 gaaagaatgg tgaggtgacc tgcaccattc cagaaaacct accttttaaa ttagaaaaat
1081 caatagataa ttattataga ttggtcacaa ccaaaaactt ggaccgggaa acactctctt
1141 tgtataacat cacactgaaa gccacagatg gtggaactcc tcccttgtcc agggaaactc
1201 acatattcat gcaggtggca gacaccaacg ataacccacc caccttcccc cactcatcct
1261 actcagtcta catcgctgag aacaacccca gaggggcctc cattttctta gtgactgcac
1321 aggaccacga cagtgaggat aatgcccaga tcacttattc cttggccgaa gacaccatcc
1381 agggggctcc agtgtcctcc tatgtctcca taaactctga cactggagtc ctgtacgcgc
1441 tgcaatcctt tgattatgag cagttgagag aactacaact aagagtgact gcacatgaca
1501 gcggggaccc gcctctcagc agcaacatgt cactgagcct gttcgtgctg gaccagaatg
1561 acaacccgcc cgagatcctg tacccggccc tccccacaga tggttctact ggcatggagc
1621 tggcaccccg ctccgcagag cccggctacc tggtgaccaa ggtggtggcg gtggacaaag
1681 attcaggcca gaacgcctgg ctgtcatacc tcctgcttaa ggccagcgag ccaggactct
1741 ttgcggttgg gctgtacacg ggcgaggtgc gcacggctcg ggccctgctg gacagagatg
1801 ccctcaagca gagcctcgtg gtggccgtcc aggaccacgg tcagcctcct ctgtcagcca
1861 ccgtcacact caccgtggct gtggctgaca gcatccccga agtcttggcc gacctgggca
1921 gccttgagcc ctccgacggt ccttacaact atgacctcac gttgtacctg gtggtggcgg
1981 tggccacagt ctcctgcgtc ttcctagcct tcgtcctcgt actgctggcg ctcaggctgc
2041 ggcgctggca caagtcacgc ctgctgcagg cttcagaagg tggcttggcg aacgtgccca
2101 cctcgcactt tgtgggcatg gacggggtgc aggctttcct gcagacctat tcccatgagg
2161 tctccctcac cgcggactct cggaagagtc acctgatctt cccccagccc aactatgtag
2221 acatgctcat cagccaggag agctgtgaga aaaatgattc tttgctaaca tccgtagatt
2281 ttcaggaatg taaagaaaac ctgccaagta ttcagcaagc cccgcccaac acggactggc
2341 gtttctctca ggcccagaga cccggcacca gcggctccca aaatggcgat gacaccggca
2401 cctggcccaa caaccagttt gacacagaga tgctgcaagc catgatcttg gcgtccgcca
2461 gtgaagctgc tgatgggagc tccaccctgg gagggggtgc cggcaccatg ggattgagcg
2521 cccgctacgg accccagttc accctgcagc acgtgcccga ctaccgccag aatgtctaca
2581 tcccaggcag caatgccaca ctgaccaacg cagctggcaa gcgggatggc aaggccccag
2641 caggtggcaa tggcaacaag aagaagtcgg gcaagaagga gaagaagtaa catggaggcc
2701 aggccaagag ccacagggca gcctctcccc aaccagccca gcttctcctt acctgcaccc
2761 aggcctcaga gtttcagggc taacccccag aatactggta ggggccaagg ccatgctccc
2821 cttgggaaac agaaacaagt gcccagtcag cacctacccc ttccccccca gggggttgaa
2881 tatgcaaaag cagttccgct gggaaccccc atccaatcaa ctgctgtacc catgggggta
2941 gtggggttac tgtagacacc aagaaccatt tgccacaccc cgtttagtta cagctgaact
3001 cctccatctt ccaaatcaat caggcccatc catcccatgc ctccctcctc cccaccccac
3061 tccaacagtt cctctttccc gagtaaggtg gttggggtgt tgaagtacca agtaacctac
3121 aagcctccta gttctgaaaa gttggaaggg catcatgacc tcttggcctc tcctttgatt
3181 ctcaatcttc ccccaaagca tggtttggtg ccagcccctt cacctccttc cagagcccaa
3241 gatcaatgct caagttttgg aggacatgat caccatcccc atggtactga tgcttgctgg
3301 atttagggag ggcattttgc taccaagcct cttcccaacg ccctggggac cagtcttctg
3361 ttttgttttt cattgtttga cgtttccact gcatgccttg acttccccca cctcctcctc
3421 aaacaagaga ctccactgca tgttccaaga cagtatgggg tggtaagata aggaagggaa
3481 gtgtgtggat gtggatggtg ggggcatgga caaagcttga cacatcaagt tatcaaggcc
3541 ttggaggagg ctctgtatgt cctcagggga ctgacaacat cctccagatt ccagccataa
3601 accaataact aggctggacc cttcccacta cataataggg ctcagcccag gcagccagct
3661 ttgggctgag ctaacaggac caatggatta aactggcatt tcagtccaag gaagctcgaa
3721 gcaggtttag gaccaggtcc ccttgagagg tcagaggggc ctctgtgggt gctgggtact
3781 ccagaggtgc cactggtgga agggtcagcg gagccccagc aggaagggtg ggccagccag
3841 gccattctta gtccctgggt tggggaggca gggagctagg gcagggacca aatgaacaga
3901 aagtctcagc ccaggatggg gcttcttcaa cagggcccct gccctcctga agcctcagtc
3961 cttcaccttg ccaggtgccg tttctcttcc gtgaaggcca ctgcccaggt ccccagtgcg
4021 ccccctagtg gccatagcct ggttaaagtt ccccagtgcc tccttgtgca tagaccttct
4081 tctcccaccc ccttctgccc ctgggtcccc ggccatccag cggggctgcc agagaacccc
4141 agacctgccc ttacagtagt gtagcgcccc ctccctcttt cggctggtgt agaatagcca
4201 gtagtgtagt gcggtgtgct tttacgtgat ggcgggtggg cagcgggcgg cgggctccgc
4261 gcagccgtct gtccttgatc tgcccgcggc ggcccgtgtt gtgttttgtg ctgtgtccac
4321 gcgctaaggc gaccccctcc cccgtactga cttctataag cgcttctctt cgcatagtca
4381 cgtagctccc accccaccct cttcctgtgt ctcacgcaag ttttatactc taatatttat
4441 atggcttttt ttcttcgaca aaaaaataat aaaacgtttc ttctg
//