LOCUS AB208927 4763 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for protocadherin gamma subfamily A, 3 isoform 1
precursor variant protein.
ACCESSION AB208927
VERSION AB208927.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4763)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..4763
/clone="fj19046"
/db_xref="H-InvDB:HIT000328862"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000296"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <80..2965
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="protocadherin gamma subfamily A, 3 isoform 1
precursor variant"
/protein_id="BAD92164.1"
/translation="KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLAL
LCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQ
LFSLNSQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAP
NFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA
KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEY
RVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILK
SLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVG
REIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNIS
LRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDP
DSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDS
GNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD
RDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPP
LSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVL
LALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLI
FPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTS
GSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL
QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1104 a 1397 c 1232 g 1030 t
ORIGIN
1 cagactcaga agatccgggg cggctgccaa cctcacctct tagtcaacca gctgtttgac
61 ctgtgaatta ggcccgtaaa agacttcgtt tcttgagaaa ataagattgg agtccgtcgt
121 aggaaactgg aaccgaattc agagaaagcg attcaccgaa aaggaaatga ccaattgcct
181 gagtttccga aatggcagag gactggccct gctgtgcgcg ctcctgggga cgctgtgcga
241 aacaggatcc ggtcagatcc gctactcggt gtctgaggag ctagataaag gttccttcgt
301 gggcaacatc gctaacgacc tggggctaga gccccgggag ctggcggagc gcggagtccg
361 catcgtctcc agaggtagga cgcagctttt ctctctgaat tcgcaaagcg gcagcttggt
421 caccgcggag aggatagacc gggaggagct ctgcgctcag atcccgctgt gtctggtaaa
481 aattaacatt ctggttgagg ataaattgaa aatttttgaa gtagaaatag aaattaaaga
541 tattaatgat aatgctccta atttcccaac agaggaattg gaaataaaaa ttggtgaact
601 aacggttcct ggaacccgat ttccaattaa aactgctttt gacccagatg taggcattaa
661 ctccctgcag aactacaagc ttagccccaa tgactacttc tctctggctg tgaatagcgt
721 ctctgagggg gccaagtatc cagagctggt gctggagcgg gccctggacc gtgagaaaaa
781 agaaattcac cagcttgtcc tggttgcctc tgatggtggc gaccctgtcc actctggcaa
841 cttgcacatc caagtgatag tcctggatgc aaatgacaac ccaccaatgt ttactcagcc
901 tgagtaccgt gtgagtgttt gggagaacgt gcctgtgggt acccggctgc tcacggtgaa
961 tgccactgac cctgacgagg gattcaatgc tcaagtgtct tatattctag ataaaatgcc
1021 tgggaaaatc gctgagattt tccatcttaa ctcagtgagt ggagaagtat caatattaaa
1081 aagtctagat tatgaggatg ccatgttcta tgaaattaaa attgaagcac aggatggacc
1141 aggtcttctt tcaagagcca agattctagt cacggttctg gatgtgaatg acaatgctcc
1201 agaaattaca atcacgtctc tcacaagctc agtcccagaa gagggcaccg ttggaagaga
1261 aattgctctt atcgacgtgc atgaccgaga ttctgggcag aatgggcagg ttgaagtttt
1321 tgtcctggga aatctgccat ttaagttaga aaaatcaata gatcaatatt accgcttagt
1381 gacggccaca tccctggacc gcgaacaaat atcagaatat aacattagtc tgagagcctc
1441 agatggggga agcccgccac tgtccacaga aactcacatc accctgcatg tgattgacat
1501 caatgacaac ccacccacct tccctcattt atcctactcc gcctacattc cagaaaacaa
1561 ccccagagga gcctccatct tctcagtgac agcccaggac ccagatagca acaacaacgc
1621 ccgcatcact tatgcattga ccgaggacac tctccagggg gcgcccctgt cctccttcgt
1681 ctctatcaac tccaacactg gcgtcctata cgcgctgaga tccttcgact acgagcaatt
1741 tagagactta aagctactgg tgacagccag cgacagcggg aaccctccac tcagcagcaa
1801 cgtgtcgctg aacctgttcg tgctggacca gaacgacaac gcgcccgaga tcctgtaccc
1861 cgccctcccc acagacggtt ccactggcgt ggagctggcg cctcgctccg cagagcccgg
1921 ctacctggtg accaaggtgg tggcggtgga cagagactcg ggccagaacg cctggctgtc
1981 ctaccgcctg ctcaaggcca gcgagccggg actcttctcg gtgggtctgc acacgggcga
2041 ggtgcgcacg gcgcgagccc tgctggacag agacgcgctc aagcagagcc tcgtggtggc
2101 cgtccaggac cacggccagc cccctctctc cgccactgtc acgctcaccg tggccgtggc
2161 cgacaggatc cccgacatcc tggccgacct gggcagcctc gagccctccg ccaaacccaa
2221 cgattcggac ctcactctgt acctggtggt ggcggtggcc gcggtctcct gcgtcttcct
2281 ggccttcgtc atcgtgctgc tggcgctcag gctgcggcgc tggcacaagt cacgcctgct
2341 gcaggcttcg ggaggcggct tggcgagtac gcccggctcg cactttgtgg gcgcggacgg
2401 ggttcgggct ttcctgcaga cctattccca cgaggtctcc ctcactgcgg actcgcggaa
2461 gagccacctg attttccccc agcccaacta tgcggacacg ctcatcagcc aggagagctg
2521 tgagaaaagc gagcctcttc tgataactca ggatttactt gaaatgaaag gagattccaa
2581 cctacttcag caagccccgc ccaacacgga ctggcgtttc tctcaggccc agagacccgg
2641 caccagcggc tcccaaaatg gcgatgacac cggcacctgg cccaacaacc agtttgacac
2701 agagatgctg caagccatga tcttggcgtc cgccagtgaa gctgctgatg ggagctccac
2761 cctgggaggg ggtgccggca ccatgggatt gagcgcccgc tacggacccc agttcaccct
2821 gcagcacgtg cccgactacc gccagaatgt ctacatccca ggcagcaatg ccacactgac
2881 caacgcagct ggcaagcggg atggcaaggc cccagcaggt ggcaatggca acaagaagaa
2941 gtcgggcaag aaggagaaga agtaacatgg aggccaggcc aagagccaca gggcggcctc
3001 tccccaacca gcccagcttc tccttacctg cacccaggcc tcagagtttc agggctaacc
3061 cccagaatac tggtaggggc caaggccatg ctccccttgg gaaacagaaa caagtgccca
3121 gtcagcacct accccttccc ccccaggggg ttgaatatgc aaaagcagtt ccgctgggaa
3181 cccccatcca atcaactgct gtacccatgg gggtagtggg gttactgtag acaccaagaa
3241 ccatttgcca caccccgttt agttacagct gaactcctcc atcttccaaa tcaatcaggc
3301 ccatccatcc catgcctccc tcctccccac cccactccaa cagttcctct ttcccgagta
3361 aggtggttgg ggtgttgaag taccaagtaa cctacaagcc tcctagttct gaaaagttgg
3421 aagggcatca tgacctcttg gcctctcctt tgattctcaa tcttccccca aagcatggtt
3481 tggtgccagc cccttcacct ccttccagag cccaagatca atgctcaagt tttggaggac
3541 atgatcacca tccccatggt actgatgctt gctggattta gggagggcat tttgctacca
3601 agcctcttcc caacgccctg gggaccagtc ttctgttttg tttttcattg tttgacgttt
3661 ccactgcatg ccttgacttc ccccacctcc tcctcaaaca agagactcca ctgcatgttc
3721 caagacagta tggggtggta agataaggaa gggaagtgtg tggatgtgga tggtgggggc
3781 atggacaaag cttgacacat caagttatca aggccttgga ggaggctctg tatgtcctca
3841 ggggactgac aacatcctcc agattccagc cataaaccaa taactaggct ggacccttcc
3901 cactacataa tagggctcag cccaggcagc cagctttggg ctgagctaac aggaccaatg
3961 gattaaactg gcatttcagt ccaaggaagc tcgaagcagg tttaggacca ggtccccttg
4021 agaggtcaga ggggcctctg tgggtgctgg gtactccaga ggtgccactg gtggaagggt
4081 cagcggagcc ccagcaggaa gggtgggcca gccaggccat tcttagtccc tgggttgggg
4141 aggcagggag ctagggcagg gaccaaatga acagaaagtc tcagcccagg atggggcttc
4201 ttcaacaggg cccctgccct cctgaagcct cagtccttca ccttgccagg tgccgtttct
4261 cttccgtgaa ggccactgcc caggtcccca gtgcgccccc tagtggccat agcctggtta
4321 aagttcccca gtgcctcctt gtgcatagac cttcttctcc cacccccttc tgcccctggg
4381 tccccggcca tccagcgggg ctgccagaga accccagacc tgcccttaca gtagtgtagc
4441 gccccctccc tctttcggct ggtgtagaat agccagtagt gtagtgcggt gtgcttttac
4501 gtgatggcgg gtgggcagcg ggcggcgggc tccgcgcagc cgtctgtcct tgatctgccc
4561 gcggcggccc gtgttgtgtt ttgtgctgtg tccacgcgct aaggcgaccc cctcccccgt
4621 actgacttct cctataagcg cttctcttcg catagtcacg tagctcccac cccaccctct
4681 tcctgtgtct cacgcaagtt ttatactcta atatttatat ggcttttttt cttcgacaaa
4741 aaaataataa aacgtttctt ctg
//