LOCUS AB208904 7911 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for protein tyrosine phosphatase, non-receptor
type 13 isoform 2 variant protein.
ACCESSION AB208904
VERSION AB208904.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 7911)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..7911
/clone="pf00494"
/db_xref="H-InvDB:HIT000328839"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000254"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..7305
/codon_start=1
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="protein tyrosine phosphatase, non-receptor type
13 isoform 2 variant"
/protein_id="BAD92141.1"
/translation="QELFRKVSLADPAALGFIISPWSLLLLPSGSVSFTDENISNQDL
RAFTAPEVLQNQSLTSLSDVEKIHIYSLGMTLYWGADYEVPQSQPIKLGDHLNSILLG
MCEDVIYARVSVRTVLDACSAHIRNSNCAPSFSYVKHLVKLVLGNLSGTDQLSCNSEQ
KPDRSQAIRDRLRGKGLPTGRSSTSDVLDIQKPPLSHQTFLNKGLSKSMGFLSIKDTQ
DENYFKDILSDNSGREDSENTFSPYQFKTSGPEKKPIPGIDVLSKKKIWASSMDLLCT
ADRDFSSGETATYRRCHPEAVTVRTSTTPRKKEARYSDGSIALDIFGPQKMDPIYHTR
ELPTSSAISSALDRIRERQKKLQVLREAMNVEEPVRRYKTYHGDVFSTSSESPSIISS
ESDFRQVRRSEASKRFESSSGLPGVDETLSQGQSQRPSRQYETPFEGNLINQEIMLKR
QEEELMQLQAKMALRQSRLSLYPGDTIKASMLDITRDPLREIALETAMTQRKLRNFFG
PEFVKMTIEPFISLDLPRSILTKKGKNEDNRRKVNIMLLNGQRLELTCDTKTICKDVF
DMVVAHIGLVEHHLFALATLKDNEYFFVDPDLKLTKVAPEGWKEEPKKKTKATVNFTL
FFRIKFFMDDVSLIQHTLTCHQYYLQLRKDILEERMHCDDETSLLLASLALQAEYGDY
QPEVHGVSYFRMEHYLPARVMEKLDLSYIKEELPKLHNTYVGASEKETELEFLKVCQR
LTEYGVHFHRVHPEKKSQTGILLGVCSKGVLVFEVHNGVRTLVLRFPWRETKKISFSK
KKITLQNTSDGIKHGFQTDNSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIERASF
RSLNLQAESVRGFNMGRAISTGSLASSTLNKLAVRPLSVQAEILKRLSCSELSLYQPL
QNSSKEKNDKASWEEKPREMSKSYHDLSQASLYPHRKNVIVNMEPPPQTVAELVGKPS
HQMSRSDAESLAGVTKLNNSKSVASLNRSPERRKHESDSSSIEDPGQAYVLDVLHKRW
SIVSSPEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPADLDGCLK
PGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQPKEKISKVPSTPVHLTNEMK
NYMKKSSYMQDSAIDSSSKDHHWSRGTLRHISENSFGPSGGLREGSLSSQDSRTESAS
LSQSQVNGFFASHLGDQTWQESQHGSPSPSVISKATEKETFTDSNQSKTKKPGISDVT
DYSDRGDSDMDEATYSSSQDHQTPKQESSSSVNTSNKMNFKTLSSSPPKPGDIFEVEL
AKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA
THKQAVETLRNTGQVVHLLLEKGQSPTFKEHVPVTPQCTLSDQNAQGQGPEKVKKTTQ
VKDYSFVTEENTFEVKLFKNSSGLGFSFSREDNLIPEQINASIVRVKKLFPGQPAAES
GKIDVGDVILKVNGASLKGLSQQEVISALRGTAPEVFLLLCRPPPGVLPEIDTALLTP
LQSPAQVLPNSSKDSSQPSCVKQSTSSDENEMSDKSKKQCKSPSRRDSYSDSSGSGED
DLVTAPANISNSTWSSALHQTLSNMVSQAQSHHEAPKSQEDTICTMFYYPQKIPNKPE
FEDSNPSPLPPDMAPGQSYQPQSESASSSSMDKYHIHHISEPTRQENWTPLKNDLENH
LEDFELEVELLITLIKSEKGSLGFTVTKGNQRIGCYVHDVIQDPAKSDGRLKPGDRLI
KVNDTDVTNMTHTDAVNLLRAASKTVRLVIGRVLELPRIPMLPHLLPDITLTCNKEEL
GFSLCGGHDSLYQVVYISDINPRSVAAIEGNLQLLDVIHYVNGVSTQGMTLEEVNRAL
DMSLPSLVLKATRNDLPVVPSSKRSAVSAPKSTKGNGSYSVGSCSQPALTPNDSFSTV
AGEEINEISYPKGKCSTYQIKGSPNLTLPKESYIQEDDIYDDSQEAEVIQSLLDVVDE
EAQNLLNENNAAGDSCGPGTLKMNGKLSEERTEDTDCDGSPLPEYFTEATKMNGCEEY
CEEKVKSESLIQKPQEKKTDDDEITWGNDELPIERTNHEDSDKDHSFLTNDELAVLPV
VKVLPSGKYTGANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKN
RYKNILPYDATRVPLGDEGGYINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWE
QKSTVIAMMTQEVEGEKIKCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTL
EDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRSGPIITHCSAGIGRS
GTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTRLQA
EEEQKQQPQLLK"
BASE COUNT 2544 a 1620 c 1687 g 2060 t
ORIGIN
1 caagaattat tcagaaaagt aagcctagct gatcctgctg cccttggctt catcatttct
61 ccatggtctc tgctgttgct gccatctggt agtgtgtcat ttacagatga aaatatttcc
121 aatcaggatc ttcgagcatt cactgcacca gaggttcttc aaaatcagtc actaacttct
181 ctctcagatg ttgaaaagat ccacatttat tctcttggaa tgacactgta ttggggggct
241 gattatgaag tgcctcagag ccaacctatt aagcttggag atcatctcaa cagcatactg
301 cttggaatgt gtgaggatgt tatttacgct cgagtttctg ttcggactgt gctggatgct
361 tgcagtgccc acattaggaa tagcaattgt gcaccctcat tttcctacgt gaaacacttg
421 gtaaaactgg ttctgggaaa tctttctggg acagatcagc tttcctgtaa cagtgaacaa
481 aagcctgatc gaagccaggc tattcgagat cgattgcgag gaaaaggatt accaacagga
541 agaagctcta cttctgatgt actagacata caaaagcctc cactctctca tcagaccttt
601 cttaacaaag ggcttagtaa atctatggga tttctgtcca tcaaagatac acaagatgag
661 aattatttca aggacatttt atcagataat tctggacgtg aagattctga aaatacattc
721 tccccttacc agttcaaaac tagtggccca gaaaaaaaac ccatccctgg cattgatgtg
781 ctttctaaga agaagatctg ggcttcatcc atggacttgc tttgtacagc tgacagagac
841 ttctcttcag gagagactgc cacatatcgt cgttgtcacc ctgaggcagt aacagtgcgg
901 acttcaacta ctcctagaaa aaaggaggca agatactcag atggaagtat agccttggat
961 atctttggcc ctcagaaaat ggatccaata tatcacactc gagaattgcc cacctcctca
1021 gcaatatcaa gtgctttgga ccgaatccga gagagacaaa agaaacttca ggttctgagg
1081 gaagccatga atgtagaaga accagttcga agatacaaaa cttatcatgg tgatgtcttt
1141 agtacctcca gtgaaagtcc atctattatt tcctctgaat cagatttcag acaagtgaga
1201 agaagtgaag cctcaaagag gtttgaatcc agcagtggtc tcccaggggt agatgaaacc
1261 ttaagtcaag gccagtcaca gagaccgagc agacaatatg aaacaccctt tgaaggcaac
1321 ttaattaatc aagagatcat gctaaaacgg caagaggaag aactgatgca gctacaagcc
1381 aaaatggccc ttagacagtc tcggttgagc ctatatccag gagacacaat caaagcgtcc
1441 atgcttgaca tcaccaggga tccgttaaga gaaattgccc tagaaacagc catgactcaa
1501 agaaaactga ggaatttctt tggccctgag tttgtgaaaa tgacaattga accatttata
1561 tctttggatt tgccacggtc tattcttact aagaaaggga agaatgagga taaccgaagg
1621 aaagtaaaca taatgcttct gaacgggcaa agactggaac tgacctgtga taccaaaact
1681 atatgtaaag atgtgtttga tatggttgtg gcacatattg gcttagtaga gcatcatttg
1741 tttgctttag ctaccctcaa agataatgaa tatttctttg ttgatcctga cttaaaatta
1801 accaaagtgg ccccagaggg atggaaagaa gaaccaaaga aaaagaccaa agccactgtt
1861 aattttactt tgtttttcag aattaaattt tttatggatg atgttagtct aatacaacat
1921 actctgacgt gtcatcagta ttaccttcag cttcgaaaag atattttgga ggaaaggatg
1981 cactgtgatg atgagacttc cttattgctg gcatccttgg ctctccaggc tgagtatgga
2041 gattatcaac cagaggttca tggtgtgtct tactttagaa tggagcacta tttgcccgcc
2101 agagtgatgg agaaacttga tttatcctat atcaaagaag agttacccaa attgcataat
2161 acctatgtgg gagcttctga aaaagagaca gagttagaat ttttaaaggt ctgccaaaga
2221 ctgacagaat atggagttca ttttcaccga gtgcaccctg agaagaagtc acaaacagga
2281 atattgcttg gagtctgttc taaaggtgtc cttgtgtttg aagttcacaa tggagtgcgc
2341 acattggtcc ttcgctttcc atggagggaa accaagaaaa tatctttttc taaaaagaaa
2401 atcacattgc aaaatacatc agatggaata aaacatggct tccagacaga caacagtaag
2461 atatgccagt acctgctgca cctctgctct taccagcata agttccagct acagatgaga
2521 gcaagacaga gcaaccaaga tgcccaagat attgagagag cttcgtttag gagcctgaat
2581 ctccaagcag agtctgttag aggatttaat atgggacgag caatcagcac tggcagtctg
2641 gccagcagca ccctcaacaa acttgctgtt cgacctttat cagttcaagc tgagattctg
2701 aagaggctat cctgctcaga gctgtcgctt taccagccat tgcaaaacag ttcaaaagag
2761 aagaatgaca aagcttcatg ggaggaaaag cctagagaga tgagtaaatc ataccatgat
2821 ctcagtcagg cctctctcta tccacatcgg aaaaatgtca ttgttaacat ggaaccccca
2881 ccacaaaccg ttgcagagtt ggtgggaaaa ccttctcacc agatgtcaag atctgatgca
2941 gaatctttgg caggagtgac aaaacttaat aattcaaagt ctgttgcgag tttaaataga
3001 agtcctgaaa ggaggaaaca tgaatcagac tcctcatcca ttgaagaccc tgggcaagca
3061 tatgttctag atgtgctaca caaaagatgg agcatagtat cttcaccaga aagggagatc
3121 accttagtga acctgaaaaa agatgcaaag tatggcttgg gatttcaaat tattggtggg
3181 gagaagatgg gaagactgga cctaggcata tttatcagtt cagttgcccc tggaggacca
3241 gctgacttgg atggatgctt gaagccagga gaccgtttga tatctgtgaa tagtgtgagt
3301 ctggagggag tcagccacca tgctgcaatt gaaattttgc aaaatgcacc tgaagatgtg
3361 acacttgtta tctctcagcc aaaagaaaag atatccaaag tgccttctac tcctgtgcat
3421 ctcaccaatg agatgaaaaa ctacatgaag aaatcttcct acatgcaaga cagtgctata
3481 gattcttctt ccaaggatca ccactggtca cgtggtaccc tgaggcacat ctcggagaac
3541 tcctttgggc cgtctggggg cctgcgggaa ggaagcctga gttctcaaga ttccaggact
3601 gagagtgcca gcttgtctca aagccaggtc aatggtttct ttgccagcca tttaggtgac
3661 caaacctggc aggaatcaca gcatggcagc ccttccccat ctgtaatatc caaagccacc
3721 gagaaagaga ctttcactga tagtaaccaa agcaaaacta aaaagccagg catttctgat
3781 gtaactgatt actcagaccg tggagattca gacatggatg aagccactta ctccagcagt
3841 caggatcatc aaacaccaaa acaggaatct tcctcttcag tgaatacatc caacaagatg
3901 aattttaaaa ctttgtcttc atcacctcct aagcctggag atatctttga ggttgaactg
3961 gctaaaaatg ataacagctt ggggataagt gtcacgggag gtgtgaatac gagtgtcaga
4021 catggtggca tttatgtgaa agctgttatt ccccagggag cagcagagtc tgatggtaga
4081 attcacaaag gtgatcgcgt cctagctgtc aatggagtta gtctagaagg agccacccat
4141 aagcaagctg tggaaacact gagaaataca ggacaggtgg ttcatctgtt attagaaaag
4201 ggacaatctc caacatttaa agaacatgtc ccggtaaccc cacagtgtac cctttcagat
4261 cagaatgccc aaggtcaagg cccagaaaaa gtgaagaaaa caactcaggt caaagactac
4321 agctttgtca ctgaagaaaa tacatttgag gtaaaattat ttaaaaatag ctcaggtcta
4381 ggattcagtt tttctcgaga agataatctt ataccggagc aaattaatgc cagcatagta
4441 agggttaaaa agctctttcc tggacagcca gcagcagaaa gtggaaaaat tgatgtagga
4501 gatgttatct tgaaagtgaa tggagcctct ttgaaaggac tatctcagca ggaagtcata
4561 tctgctctca ggggaactgc tccagaagta ttcttgcttc tctgcagacc tccacctggt
4621 gtgctaccgg aaattgatac tgcgcttttg accccacttc agtctccagc acaagtactt
4681 ccaaacagca gtaaagactc ttctcagcca tcatgtgtga agcaaagcac cagctcagat
4741 gaaaatgaaa tgtcagacaa aagcaaaaaa cagtgcaagt ccccatccag aagagacagt
4801 tacagtgaca gcagtgggag tggagaagat gacttagtga cagctccagc aaacatatca
4861 aattcgacct ggagttcagc tttgcatcag actctaagca acatggtatc acaggcacag
4921 agtcatcatg aagcacccaa gagtcaagaa gataccattt gtaccatgtt ttactatcct
4981 cagaaaattc ccaataaacc agagtttgag gacagtaatc cttcccctct accaccggat
5041 atggctcctg ggcagagtta tcaaccccaa tcagaatctg cttcctctag ttcgatggat
5101 aagtatcata tacatcacat ttctgaacca actagacaag aaaactggac acctttgaaa
5161 aatgacttgg aaaatcacct tgaagacttt gaactggaag tagaactcct cattacccta
5221 attaaatcag aaaaaggaag cctgggtttt acagtaacca aaggcaatca gagaattggt
5281 tgttatgttc atgatgtcat acaggatcca gccaaaagtg atggaaggct aaaacctggg
5341 gaccggctca taaaggttaa tgatacagat gttactaata tgactcatac agatgcagtt
5401 aatctgctcc gggctgcatc caaaacagtc agattagtta ttggacgagt tctagaatta
5461 cccagaatac caatgttgcc tcatttgcta ccggacataa cgctaacatg caacaaagag
5521 gagttgggtt tttccttatg tggaggtcat gacagccttt atcaagtggt atatattagt
5581 gatattaatc caaggtccgt cgcagccatt gagggtaatc tccagctatt agatgtcatc
5641 cattatgtga acggagtcag cacacaagga atgaccttgg aggaagttaa cagagcatta
5701 gacatgtcac ttccttcatt ggtattgaaa gcaacaagaa atgatcttcc agtggtcccc
5761 agctcaaaga ggtctgctgt ttcagctcca aagtcaacca aaggcaatgg ttcctacagt
5821 gtggggtctt gcagccagcc tgccctcact cctaatgatt cattctccac ggttgctggg
5881 gaagaaataa atgaaatatc gtaccccaaa ggaaaatgtt ctacttatca gataaaggga
5941 tcaccaaact tgactctgcc caaagaatct tatatacaag aagatgacat ttatgatgat
6001 tcccaagaag ctgaagttat ccagtctctg ctggatgttg tggatgagga agcccagaat
6061 cttttaaacg aaaataatgc agcaggagac tcctgtggtc caggtacatt aaagatgaat
6121 gggaagttat cagaagagag aacagaagat acagactgcg atggttcacc tttacctgag
6181 tattttactg aggccaccaa aatgaatggc tgtgaagaat attgtgaaga aaaagtaaaa
6241 agtgaaagtt taattcagaa gccacaagaa aagaagactg atgatgatga aataacatgg
6301 ggaaatgatg agttgccaat agagagaaca aaccatgaag attctgataa agatcattcc
6361 tttctgacaa acgatgagct cgctgtactc cctgtcgtca aagtgcttcc ctctggtaaa
6421 tacacgggtg ccaacttaaa atcagtcatt cgagtcctgc ggggtttgct agatcaagga
6481 attccttcta aggagctgga gaatcttcaa gaattaaaac ctttggatca gtgtctaatt
6541 gggcaaacta aggaaaacag aaggaagaac agatataaaa atatacttcc ctatgatgct
6601 acaagagtgc ctcttggaga tgaaggtggc tatatcaatg ccagcttcat taagatacca
6661 gttgggaaag aagagttcgt ttacattgcc tgccaaggac cactgcctac aactgttgga
6721 gacttctggc agatgatttg ggagcaaaaa tccacagtga tagccatgat gactcaagaa
6781 gtagaaggag aaaaaatcaa atgccagcgc tattggccca acatcctagg caaaacaaca
6841 atggtcagca acagacttcg actggctctt gtgagaatgc agcagctgaa gggctttgtg
6901 gtgagggcaa tgacccttga agatattcag accagagagg tgcgccatat ttctcatctg
6961 aatttcactg cctggccaga ccatgataca ccttctcaac cagatgatct gcttactttt
7021 atctcctaca tgagacacat ccacagatca ggcccaatca ttacgcactg cagtgctggc
7081 attggacgtt cagggaccct gatttgcata gatgtggttc tgggattaat cagtcaggat
7141 cttgattttg acatctctga tttggtgcgc tgcatgagac tacaaagaca cggaatggtt
7201 cagacagagg atcaatatat tttctgctat caagtcatcc tttatgtcct gacacgtctt
7261 caagcagaag aagagcaaaa acagcagcct cagcttctga agtgacatga aaagagcctc
7321 tggatgcatt tccatttctc tccttaacct ccagcagact cctgctctct atccaaaata
7381 aagatcacag agcagcaagt tcatacaaca tgcatgttct cctctatctt agaggggtat
7441 tcttcttgaa aataaaaaat attgaaatgc tgtattttta cagctacttt aacctatgat
7501 aattatttac aaaattttaa cactaaccaa acaatgcaga tcttagggat gattaaaggc
7561 agcatttgat gatagcagac attgttacaa ggacatggtg agtctatttt taatgcacca
7621 atcttgttta tagcaaaaat gttttccaat attttaataa agtagttatt ttatagggga
7681 tacttgaaac cagtatttaa gctttaaatg acagtaatat tggcatagaa aaaagtagca
7741 aatgtttact gtatcaattt ctaatgttta ctatatagaa tttcctgtaa tatatttata
7801 tactttttca tgaaaatgga gttatcagtt atctgtttgt tactgcatca tctgtttgta
7861 atcattatct cactttgtaa ataaaaacac accttaaaac atgaacacgc c
//