LOCUS AB208855 4872 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for Receptor protein tyrosine phosphatase hPTP-J
precursor variant protein.
ACCESSION AB208855
VERSION AB208855.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4872)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..4872
/clone="fj15275"
/db_xref="H-InvDB:HIT000328790"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000160"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..3734
/codon_start=3
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="Receptor protein tyrosine phosphatase hPTP-J
precursor variant"
/protein_id="BAD92092.1"
/translation="RLGDVEVNAGQNASFQCMAAGRAAEAERFLLQRQSGALVPAAGV
RHISHRRFLATFPLAAVSRAEQDLYRCVSQAPRGAGVSNFAELIVKEPPTPIAPPQLL
RAGPTYLIIQLNTNSIIGDGPIVRKEIEYRMARGPWAEVHAVSLQTYKLWHLDPDTEY
EISVLLTRPGDGGTGRPGPPLISRTKCAEPMRAPKGLAFAEIQARQLTLQWEPLGYNV
TRCHTYTVSLCYHYTLGSSHNQTIRECVKTEQGVSRYTIKNLLPYRNVHVRLVLTNPE
GRKEGKEVTFQTDEDVPSGIAAESLTFTPLEDMIFLKWEEPQEPNGLITQYEISYQSI
ESSDPAVNVPGPRRTISKLRNETYHVFSNLHPGTTYLFSVRARTGKGFGQAALTEITT
NISAPSFDYADMPSPLGESENTITVLLRPAQGRGAPISVYQVIVEEERARRLRREPGG
QDCFPVPLTFEAALARGLVHYFGAELAASSLPEAMPFTVGDNQTYRGFWNPPLEPRKA
YLIYFQAASHLKGETRLNCIRIARKAACKESKRPLEVSQRSEEMGLILGICAGGLAVL
ILLLGAIIVIIRKGKPVNMTKATVNYRQEKTHMMSAVDRSFTDQSTLQEDERLGLSFM
DTHGYSTRGDQRSGGVTEASSLLGGSPRRPCGRKGSPYHTGQLHPAVRVADLLQHINQ
MKTAEGYGFKQEYESFFEGWDATKKKDKVKGSRQEPMPAYDRHRVKLHPMLGDPNADY
INANYIDGYHRSNHFIATQGPKPEMVYDFWRMVWQEHCSSIVMITKLVEVGRVKCSRY
WPEDSDTYGDIKIMLVKTETLAEYVVRTFALERRGYSARHEVRQFHFTAWPEHGVPYH
ATGLLAFIRRVKASTPPDAGPIVIHCSAGTGRTGCYIVLDVMLDMAECEGVVDIYNCV
KTLCSRRVNMIQTEEQYIFIHDAILEACLCGETTIPVSEFKATYKEMIRIDPQSNSSQ
LREEFQTLNSVTPPLDVEECSIALLPRNRDKNRSMDVLPPDRCLPFLISTDGDSNNYI
NAALTDSYTRSAAFIVTLHPLQSTTPDFWRLVYDYGCTSIVMLNQLNQSNSAWPCLQY
WPEPGRQQYGLMEVEFMSGTADEDLVARVFRVQNISRLQEGHLLVRHFQFLRWSAYRD
TPDSKKAFLHLLAEVDKWQAESGDGRTIVHCLNGGGRSGTFCACATVLEMIRCHNLVD
VFFAAKTLRNYKPNMVETMDQYHFCYDVALEYLEGLESR"
BASE COUNT 976 a 1524 c 1441 g 931 t
ORIGIN
1 cccgcctggg cgacgtggag gtcaacgcgg gccagaacgc gtcgttccag tgcatggccg
61 cgggcagagc ggccgaggcc gaacgcttcc tcttgcaacg gcagagcggg gcgctggtgc
121 cggcggcggg cgtgcggcac atcagccacc ggcgcttcct ggccactttc ccgctggctg
181 ccgtgagccg cgccgagcag gacctgtacc gctgtgtgtc ccaggccccg cgcggcgcgg
241 gcgtctctaa cttcgcggag ctcatcgtca aggagccccc aactcccatc gcgcccccac
301 agctgctgcg tgctggcccc acctacctca tcatccagct caacaccaac tccatcattg
361 gcgacgggcc gatcgtgcgc aaggagattg agtaccgcat ggcgcgcggg ccctgggctg
421 aggtgcacgc cgtcagcctg cagacctaca agctgtggca cctcgacccc gacacagagt
481 atgagatcag cgtgctgctc acgcgtcccg gagacggcgg cactggccgc cctgggccac
541 ccctcatcag ccgcaccaaa tgcgcagagc ccatgagggc ccccaaaggc ctggcttttg
601 ctgagatcca ggcccgtcag ctgaccctgc agtgggaacc actgggctac aacgtgacgc
661 gttgccacac ctatactgtg tcgctgtgct atcactacac cctgggcagc agccacaacc
721 agaccatccg agagtgtgtg aagacagagc aaggtgtcag ccgctacacc atcaagaacc
781 tgctgcccta tcggaacgtt cacgtgaggc ttgtcctcac taaccctgag gggcgcaaag
841 agggcaagga ggtcactttc cagacggatg aggatgtgcc cagtgggatt gcagccgagt
901 ccctgacctt cactccactg gaggacatga tcttcctcaa gtgggaggag ccccaggagc
961 ccaatggtct catcacccag tatgagatca gctaccagag catcgagtca tcagacccgg
1021 cagtgaacgt gccaggccca cgacgtacca tctccaagct ccgcaatgag acctaccatg
1081 tcttctccaa cctgcaccca ggcaccacct acctgttctc cgtgcgggcc cgcacaggca
1141 aaggcttcgg ccaggcggca ctcactgaga taaccactaa catctctgct cccagctttg
1201 attatgccga catgccgtca cccctgggcg agtctgagaa caccatcacc gtgctgctga
1261 ggccggcaca gggccgcggt gcgcccatca gtgtgtacca ggtgattgtg gaggaggagc
1321 gggcgcggag gctgcggcgg gagccaggtg gacaggactg cttcccagtg ccattgacct
1381 tcgaggcggc gctggcccga ggcctggtgc actacttcgg ggccgaactg gcggccagca
1441 gtctacctga ggccatgccc tttaccgtgg gtgacaacca gacctaccga ggcttctgga
1501 acccaccact tgagcctagg aaggcctatc tcatctactt ccaggcagca agccacctga
1561 agggggagac ccggctgaat tgcatccgca ttgccaggaa agctgcctgc aaggaaagca
1621 agcggcccct ggaggtgtcc cagagatcgg aggagatggg gcttatcctg ggcatctgtg
1681 caggggggct tgctgtcctc atccttctcc tgggtgccat cattgtcatc atccgcaaag
1741 ggaagccggt gaacatgacc aaggccaccg tcaactaccg ccaggagaag acacacatga
1801 tgagcgccgt ggaccgcagc ttcacagacc agagcaccct gcaggaggac gagcggctgg
1861 gcctgtcctt catggacacc catggctaca gcacccgggg agaccagcgc agcggtgggg
1921 tcactgaggc cagcagcctc ctggggggct ccccgaggcg tccctgtggc cggaagggct
1981 ccccatatca cacggggcag ctgcaccctg cggtgcgtgt cgcagacctt ctgcagcaca
2041 tcaaccagat gaagacggcc gagggttacg gcttcaagca ggagtatgag agcttctttg
2101 aaggctggga cgccacaaag aagaaagaca aggtcaaggg cagccggcag gagccaatgc
2161 ctgcctatga tcggcaccga gtgaaactgc acccgatgct gggagacccc aatgccgact
2221 acattaatgc caactacata gatggttacc acaggtcaaa ccacttcata gccactcaag
2281 ggccgaagcc tgagatggtc tatgacttct ggcgtatggt gtggcaggag cactgttcca
2341 gcatcgtcat gatcaccaag ctggtcgagg tgggcagggt gaaatgctca cggtactggc
2401 cggaggactc agacacctac ggggacatca agattatgct ggtgaagaca gagaccctgg
2461 ctgagtatgt cgtgcgcact tttgccctgg agcggagagg ctactctgcc cggcacgagg
2521 tccgccagtt ccacttcaca gcgtggccag agcatggcgt cccctaccat gccacggggc
2581 tgctggcttt catccggcgc gtgaaggcct ccaccccacc tgatgccggg cccattgtca
2641 tccactgcag cgcgggcacc ggccgcacag gttgctatat cgtcctggat gtgatgctgg
2701 acatggcaga gtgtgagggc gtcgtggaca tttacaactg tgtgaagact ctctgctccc
2761 ggcgtgtcaa catgatccag actgaggagc agtacatctt cattcatgat gcaatcctgg
2821 aggcctgcct gtgtggggag accaccatcc ctgtcagtga gttcaaggcc acctacaagg
2881 agatgatccg cattgatcct cagagtaatt cctcccagct gcgggaagag ttccagacgc
2941 tgaactcggt caccccgccg ctggacgtgg aggagtgcag catcgccctg ttgccccgga
3001 accgcgacaa gaaccgcagc atggacgtcc tgccgcccga ccgctgcctg cccttcctca
3061 tctccactga tggggactcc aacaactaca ttaatgcagc cctgactgac agctacacac
3121 ggagtgcggc cttcatcgtg accctgcacc cgctgcagag caccacgccc gacttctggc
3181 ggctggtcta cgattacggg tgcacctcca tcgtcatgct caaccagctg aaccagtcca
3241 actccgcctg gccctgcctg cagtactggc cagagccagg ccggcagcaa tatggcctca
3301 tggaggtgga gtttatgtcg ggcacagctg atgaagactt agtggctcga gtcttccggg
3361 tgcagaacat ctctcggttg caggaggggc acctgctggt gcggcacttc cagttcctgc
3421 gctggtctgc ataccgggac acacctgact ccaagaaggc cttcttgcac ctgctggctg
3481 aggtggacaa gtggcaggcc gagagtgggg atgggcgcac catcgtgcac tgcctaaacg
3541 ggggaggacg cagcggcacc ttctgcgcct gcgccacggt cctggagatg atccgctgcc
3601 acaacttggt ggacgttttc tttgctgcca aaaccctccg gaactacaaa cccaacatgg
3661 tggagaccat ggatcagtac cacttttgct acgatgtggc cctggagtac ttggaggggc
3721 tggagtcaag atagcggggc cctggcctgg ggcacccact gcacactcag ggccagaccc
3781 accatcctgg actggcgagg aagatcagtg cctcctgctc tgcccaaaca cactcccatg
3841 gggcaagcac tggagtggat gctgggctat cttgctcccc cttccactgt gggcagggcc
3901 tttcgcttgt cccatgggcg ggtggtgggc caaggaggag cttagcaagt ctgcagccca
3961 gccccacctc catagggtcc tgcaggcctg tgctgagagg cctggtgctg cctggcagag
4021 tgacaaaggc tcaggacggc tggctctggg ggactcaggc caagcccctt ggcaccatcc
4081 tggcttttgg cagggatgag tgaggccctg cagagagcat cccaggccaa ggttcccact
4141 cagcctgccc cctctgcatg tgggtagagg atgtactggg acttggcatt taggattcca
4201 tctggcccag cccctgaagg tcctggggaa gcaggtctca attctgaata gccagtgggg
4261 cacactgact gtcctcccca ggggaactgc agcgccctcc tccccactgc cccctgcagc
4321 ccctgagata ttttgctcac tatccctccc cacttgcttc cctgatatgt gctctgagct
4381 tccctgaacc aggatctgcc tattactgct gtgccccatg gggggctcct tccctgcctg
4441 acccactgtt gcagaatgaa gtcacctcgc ccccctcttc ctttaatctt caggcctcac
4501 tggcctgtcc tgctcagctt gggccagtga caatctgcaa ggctgaacaa cagcccctgg
4561 ggttgaggcc cctgtggctc ctggtcaggc tgcccgttgt ggggaggggc agtgttagag
4621 cagggctggt cataccctct ggagttcaga ggaagaggta ggaccagtgc ttttttgttt
4681 cttttgttat ttttggttgg gtgggtggga aggtctcttt aaaatggggc aggccacacc
4741 cccattccgt gcctcaattt ccccatctgt aaactgtaga tatgactact gacctacctc
4801 gcagggggct gtggggaggc ataagctgat gtttgtaaag cgctttgtaa ataaacgtgc
4861 tctctgaatg cc
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