LOCUS AB174409 1895 bp mRNA linear PRI 06-MAR-2007 DEFINITION Macaca fascicularis brain cDNA clone: QtrA-16615, similar to human ring finger protein 138 pseudogene 1 (RNF138P1) onchromosome 5, RefSeq: NR_001575.1. ACCESSION AB174409 VERSION AB174409.1 KEYWORDS oligo capping; fis (full insert sequence). SOURCE Macaca fascicularis (crab-eating macaque) ORGANISM Macaca fascicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 1895) AUTHORS Chien,H.-C., Wang,H.-Y., Liu,Y.-L., Wu,K.-M., Ho,T.-C., Tsai,S.-F. and Shen,C.-K.J. TITLE Direct Submission JOURNAL Submitted (19-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Che-Kun James Shen Institute of Molecular Biology, Academia Sinica (IMB, AC); 128, Section 2, Academy Road, Taipei 115, Taiwan URL :http://www.imb.sinica.edu.tw REFERENCE 2 AUTHORS Wang,H.-Y., Chien,H.-C., Osada,N., Hashimoto,K., Sugano,S., Gojobori,T., Chou,C.-K., Tsai,S.-F., Wu,C.-I. and Shen,C.-K.J. TITLE Rate of Evolution in Brain-Expressed Genes in Humans and Other Primates JOURNAL PLoS Biol. 5, e13 (2007) COMMENT The International consortium for macaque cDNA sequencing and analysis consists of: Department of Virology and Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Division of Genetic Resources, National Institute of Infectious Diseases of Japan, Tokyo, Japan; National Health Research Institute, Taipei, Taiwan; Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan; Department of Ecology & Evolution, University of Chicago, Chicago, IL, USA; Center for Information Biology, National Institute of Genetics of Japan, Mishima, Japan. Clone distribution: clone distribution information can be found at: http://www.nih.go.jp/yoken/genebank/ Lab host: TOP10 Vector: pME18S-FL3 (Acc.No. AB009864) R. Site1: DraIII (CACTGTGTG) R. Site2: DraIII (CACCATGTG) Description: 1st strand cDNA was primed with an oligo(dT) primer [ATGTGGCCTTTTTTTTTTTTTTTTT]; double-stranded cDNA was synthesized using specific 5' and 3' primers and amplified by PCR. The PCR product was digested with SfiI and size selection was performed to exclude fragments <1.5kb.The SfiI-digested PCR product was cloned into distinct DraIII sites of pME18S-FL3. XhoI sites just outside the DraIII sites can be used to isolate the cDNA insert. Libraries were constructed by oligo-capping method. Libraries were made from: QccE: cerebellum cortex QnpA: parietal lobe QtrA: temporal lobe right QflA: frontal lobe left QmoA: medulla oblongata QbsA: brain stem QorA: occipital lobe right QtsA: testis Custom primers were used for 5' and 3'-end sequencing. The full-insert sequencing was done by primer-walking method using ABI DNA sequencer. FEATURES Location/Qualifiers source 1..1895 /clone="QtrA-16615" /clone_lib="macaque cDNA library QtrA" /db_xref="taxon:9541" /dev_stage="adult" /mol_type="mRNA" /organism="Macaca fascicularis" /sex="male" CDS 1234..1437 /note="Homo sapiens ring finger protein 138 pseudogene 1 (RNF138P1) onchromosome 5, RefSeq: NR_001575.1" /protein_id="BAE91471.1" /translation="MPVFFVFLFILFYFFETESCFVAQAGVQWRHLGSLQLLPPGFKQ FSFSASWIAGITGAHHHAQLIFW" BASE COUNT 498 a 403 c 500 g 494 t ORIGIN 1 aacaaagatt aagcgactct gcgataggcg ctgcagatac gaggaaggag gcgacagggc 61 ctagctgtca cacagcttgg tgaagaagcc aggagacata aacacaagag tgcaacggaa 121 aactttatat gataaacatt tatgtcgggt tagtgaagcg caaaggaaga acgatcactt 181 gtgggtgggc ggaggctcac agaagcggcg caagctcaac aggtgggcaa ggaagagcag 241 aacgcgtaga cccattttag atctgcagtg tatgtcagat gactggtgtt taggagatga 301 ggaagaagcc atataatcac ttatgcaagg ataagaaatc tgatcctcca agcaggagga 361 tcgcttgagc ccaggagttc gaggctgcag tgagccatga tcgcgctacg cacccagctt 421 gggcatcaga gcaagacact gtcgcaaaag tgaagaaaaa ataaagaaga tggcctgaag 481 gggacaccag agccctttct atctcttttt cagaaaaatc ccaaggaaca attgttttgg 541 attacttagt ggactcagcg tggaaactgc ttgtgtggcc cagctaggta ggggcgttca 601 gacaaggaga cctgacctgg agcttctggg atgattccaa gattgaaagt tggttgccat 661 ctttgcaatg cctcccagct gatgcttcaa caggctactc caccattctc tcagactggg 721 tagtatgata ttgttactga gacaccagag gtttggtcta cgtcctgctg ctcgctgcac 781 agaaagccaa tgacggagac tacgagtatt accaaggaat aagcaaaaaa gaagaaggaa 841 gaagaaggag tcgtgctata gccttctgta gctacagatc gggtgctaca gccgaggaga 901 tgggagctta gtctcaaatc catctccctg ctgtactaaa actagaggtt tatatagcag 961 ggaagaagtg taacaatgta taacaaaata ggaactaggg aggggcaagg aagcaatcat 1021 gatgaatgag gggtccagca tctcattgtc cattgtctgg atgtggtgat tttttttttt 1081 tttttttttg agacagagtc ttgctctgtc acccaggctg gagtgcagtg gtgccatctc 1141 agttcacagt tcactgtaac cgctgcctcc tgggttcaag cggttctcct gcctcagcct 1201 cccgagtagc agggattaca ggcacaaacc accatgcctg ttttttttgt atttttattt 1261 attttatttt atttttttga gacagagtct tgctttgtcg cccaggctgg agtgcagtgg 1321 cgccatcttg gctctctgca acttttgcct cctgggttca agcaattctc cttctcagcc 1381 tcctggatag ctgggattac aggcgcccac caccacgccc agctaatttt ttggtagttt 1441 tagtagagac gggatttcac catcttggcc aggctggctg gtcttgaact cttgaccttg 1501 tgatctgccc gccttggcct cccaaagtgc tggtgaaagg tgaagccggc tgggcttctg 1561 ggtcatttgg ggacttggag aattttctgt ctagctaaag gattgtaaat gcgccaatca 1621 gcgctctgtg tctagctaaa gatttgtaaa tgcaccaatc agtgctctgt gtctggctaa 1681 tggggtaggg gacttggaga acttttctgt ccagctgaag gattgtaaat gcaccaatca 1741 gcactctgtg tctaggtttg taaaggctgc accagtcagt gctctgtgtc tagctaatca 1801 ggtggggact tggagaactc ttgtgtctaa ctaaaggatt gtaaatgcac caatcagcac 1861 tctgtgtcta actaaaggat tttaaacgca ctcta //