LOCUS       AB174409                1895 bp    mRNA    linear   PRI 06-MAR-2007
DEFINITION  Macaca fascicularis brain cDNA clone: QtrA-16615, similar to human
            ring finger protein 138 pseudogene 1 (RNF138P1) onchromosome 5,
            RefSeq: NR_001575.1.
ACCESSION   AB174409
VERSION     AB174409.1
KEYWORDS    oligo capping; fis (full insert sequence).
SOURCE      Macaca fascicularis (crab-eating macaque)
  ORGANISM  Macaca fascicularis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Chien,H.-C., Wang,H.-Y., Liu,Y.-L., Wu,K.-M., Ho,T.-C., Tsai,S.-F.
            and Shen,C.-K.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Che-Kun James Shen
            Institute of Molecular Biology, Academia Sinica (IMB, AC); 128,
            Section 2, Academy Road, Taipei 115, Taiwan
            URL    :http://www.imb.sinica.edu.tw
REFERENCE   2
  AUTHORS   Wang,H.-Y., Chien,H.-C., Osada,N., Hashimoto,K., Sugano,S.,
            Gojobori,T., Chou,C.-K., Tsai,S.-F., Wu,C.-I. and Shen,C.-K.J.
  TITLE     Rate of Evolution in Brain-Expressed Genes in Humans and Other
            Primates
  JOURNAL   PLoS Biol. 5, e13 (2007)
COMMENT     The International consortium for macaque cDNA sequencing
            and analysis consists of: Department of Virology and Human
            Genome Center, Institute of Medical Science, The University of
            Tokyo, Tokyo, Japan; Division of Genetic Resources, National
            Institute of Infectious Diseases of Japan, Tokyo, Japan; National
            Health Research Institute, Taipei, Taiwan; Institute of Molecular
            Biology, Academia Sinica, Taipei, Taiwan; Department of Ecology &
            Evolution, University of Chicago, Chicago, IL, USA; Center for
            Information Biology, National Institute of Genetics of Japan,
            Mishima, Japan.
            Clone distribution: clone distribution information can be
            found at: http://www.nih.go.jp/yoken/genebank/
            
            Lab host:    TOP10
            Vector:      pME18S-FL3 (Acc.No. AB009864)
            R.  Site1:   DraIII (CACTGTGTG)
            R.  Site2:   DraIII (CACCATGTG)
            Description: 1st strand cDNA was primed with an oligo(dT) primer
            [ATGTGGCCTTTTTTTTTTTTTTTTT]; double-stranded cDNA was
            synthesized using specific 5' and 3' primers and amplified
            by PCR.  The PCR product was digested with SfiI and size selection
            was performed to exclude fragments <1.5kb.The SfiI-digested
            PCR product was cloned into distinct DraIII sites of pME18S-FL3.
            XhoI sites just outside the DraIII sites can be used to
            isolate the cDNA insert.  Libraries were constructed by
            oligo-capping method. Libraries were made from:
                         QccE: cerebellum cortex
                         QnpA: parietal lobe
                         QtrA: temporal lobe right
                         QflA: frontal lobe left
                         QmoA: medulla oblongata
                         QbsA: brain stem
                         QorA: occipital lobe right
                         QtsA: testis
            Custom primers were used for 5' and 3'-end sequencing. The
            full-insert sequencing was done by primer-walking method using ABI
            DNA sequencer.
FEATURES             Location/Qualifiers
     source          1..1895
                     /clone="QtrA-16615"
                     /clone_lib="macaque cDNA library QtrA"
                     /db_xref="taxon:9541"
                     /dev_stage="adult"
                     /mol_type="mRNA"
                     /organism="Macaca fascicularis"
                     /sex="male"
     CDS             1234..1437
                     /note="Homo sapiens ring finger protein 138 pseudogene 1
                     (RNF138P1) onchromosome 5, RefSeq: NR_001575.1"
                     /protein_id="BAE91471.1"
                     /translation="MPVFFVFLFILFYFFETESCFVAQAGVQWRHLGSLQLLPPGFKQ
                     FSFSASWIAGITGAHHHAQLIFW"
BASE COUNT          498 a          403 c          500 g          494 t
ORIGIN      
        1 aacaaagatt aagcgactct gcgataggcg ctgcagatac gaggaaggag gcgacagggc
       61 ctagctgtca cacagcttgg tgaagaagcc aggagacata aacacaagag tgcaacggaa
      121 aactttatat gataaacatt tatgtcgggt tagtgaagcg caaaggaaga acgatcactt
      181 gtgggtgggc ggaggctcac agaagcggcg caagctcaac aggtgggcaa ggaagagcag
      241 aacgcgtaga cccattttag atctgcagtg tatgtcagat gactggtgtt taggagatga
      301 ggaagaagcc atataatcac ttatgcaagg ataagaaatc tgatcctcca agcaggagga
      361 tcgcttgagc ccaggagttc gaggctgcag tgagccatga tcgcgctacg cacccagctt
      421 gggcatcaga gcaagacact gtcgcaaaag tgaagaaaaa ataaagaaga tggcctgaag
      481 gggacaccag agccctttct atctcttttt cagaaaaatc ccaaggaaca attgttttgg
      541 attacttagt ggactcagcg tggaaactgc ttgtgtggcc cagctaggta ggggcgttca
      601 gacaaggaga cctgacctgg agcttctggg atgattccaa gattgaaagt tggttgccat
      661 ctttgcaatg cctcccagct gatgcttcaa caggctactc caccattctc tcagactggg
      721 tagtatgata ttgttactga gacaccagag gtttggtcta cgtcctgctg ctcgctgcac
      781 agaaagccaa tgacggagac tacgagtatt accaaggaat aagcaaaaaa gaagaaggaa
      841 gaagaaggag tcgtgctata gccttctgta gctacagatc gggtgctaca gccgaggaga
      901 tgggagctta gtctcaaatc catctccctg ctgtactaaa actagaggtt tatatagcag
      961 ggaagaagtg taacaatgta taacaaaata ggaactaggg aggggcaagg aagcaatcat
     1021 gatgaatgag gggtccagca tctcattgtc cattgtctgg atgtggtgat tttttttttt
     1081 tttttttttg agacagagtc ttgctctgtc acccaggctg gagtgcagtg gtgccatctc
     1141 agttcacagt tcactgtaac cgctgcctcc tgggttcaag cggttctcct gcctcagcct
     1201 cccgagtagc agggattaca ggcacaaacc accatgcctg ttttttttgt atttttattt
     1261 attttatttt atttttttga gacagagtct tgctttgtcg cccaggctgg agtgcagtgg
     1321 cgccatcttg gctctctgca acttttgcct cctgggttca agcaattctc cttctcagcc
     1381 tcctggatag ctgggattac aggcgcccac caccacgccc agctaatttt ttggtagttt
     1441 tagtagagac gggatttcac catcttggcc aggctggctg gtcttgaact cttgaccttg
     1501 tgatctgccc gccttggcct cccaaagtgc tggtgaaagg tgaagccggc tgggcttctg
     1561 ggtcatttgg ggacttggag aattttctgt ctagctaaag gattgtaaat gcgccaatca
     1621 gcgctctgtg tctagctaaa gatttgtaaa tgcaccaatc agtgctctgt gtctggctaa
     1681 tggggtaggg gacttggaga acttttctgt ccagctgaag gattgtaaat gcaccaatca
     1741 gcactctgtg tctaggtttg taaaggctgc accagtcagt gctctgtgtc tagctaatca
     1801 ggtggggact tggagaactc ttgtgtctaa ctaaaggatt gtaaatgcac caatcagcac
     1861 tctgtgtcta actaaaggat tttaaacgca ctcta
//