LOCUS AB166746 5227 bp mRNA linear HUM 22-FEB-2005
DEFINITION Homo sapiens TRPM2 mRNA for transient receptor potential cation
channel, subfamily M, member 2, striatum short form, complete cds.
ACCESSION AB166746
VERSION AB166746.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5227)
AUTHORS Shimizu,N., Uemura,T. and Kudoh,J.
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Nobuyoshi Shimizu
Keio University School of Medicine, Molecular Biology; 35
Shinanomachi, Shinjuku-ku, Tokyo 160-582, Japan
REFERENCE 2
AUTHORS Uemura,T., Kudoh,J., Noda,S., Kanba,S. and Shimizu,N.
TITLE Characterization of human and mouse TRPM2 genes: Identification of
a novel N-terminal truncated protein specifically expressed in
human striatum
JOURNAL Biochem. Biophys. Res. Commun. 328, 1232-1243 (2005)
COMMENT
FEATURES Location/Qualifiers
source 1..5227
/chromosome="21"
/db_xref="H-InvDB:HIT000242480"
/db_xref="taxon:9606"
/map="21q22.3"
/mol_type="mRNA"
/organism="Homo sapiens"
/tissue_type="brain, caudate nucleus"
CDS 95..3964
/codon_start=1
/gene="TRPM2"
/product="transient receptor potential cation channel,
subfamily M, member 2, striatum short form (SSF-TRPM2)"
/protein_id="BAD83706.1"
/translation="MKQVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIHPTG
SFPAEYILDEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRLEKFISEQTKER
GGVAIKIPIVCVVLEGGPGTLHTIDNATTNGTPCVVVEGSGRVADVIAQVANLPVSDI
TISLIQQKLSVFFQEMFETFTESRIVEWTKKIQDIVRRRQLLTVFREGKDGQQDVDVA
ILQALLKASRSQDHFGHENWDHQLKLAVAWNRVDIARSEIFMDEWQWKPSDLHPTMTA
ALISNKPEFVKLFLENGVQLKEFVTWDTLLYLYENLDPSCLFHSKLQKVLVEDPERPA
CAPAAPRLQMHHVAQVLRELLGDFTQPLYPRPRHNDRLRLLLPVPHVKLNVQGVSLRS
LYKRSSGHVTFTMDPIRDLLIWAIVQNRRELAGIIWAQSQDCIAAALACSKILKELSK
EEEDTDSSEEMLALAEEYEHRAIGVFTECYRKDEERAQKLLTRVSEAWGKTTCLQLAL
EAKDMKFVSHGGIQAFLTKVWWGQLSVDNGLWRVTLCMLAFPLLLTGLISFREKRLQD
VGTPAARARAFFTAPVVVFHLNILSYFAFLCLFAYVLMVDFQPVPSWCECAIYLWLFS
LVCEEMRQLFYDPDECGLMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPATLYPGR
VILSLDFILFCLRLMHIFTISKTLGPKIIIVKRMMKDVFFFLFLLAVWVVSFGVAKQA
ILIHNERRVDWLFRGAVYHSYLTIFGQIPGYIDGVNFNPEHCSPNGTDPYKPKCPESD
ATQQRPAFPEWLTVLLLCLYLLFTNILLLNLLIAMFNYTFQQVQEHTDQIWKFQRHDL
IEEYHGRPAAPPPFILLSHLQLFIKRVVLKTPAKRHKQLKNKLEKNEEAALLSWEIYL
KENYLQNRQFQQKQRPEQKIEDISNKVDAMVDLLDLDPLKRSGSMEQRLASLEEQVAQ
TARALHWIVRTLRASGFSSEADVPTLASQKAAEEPDAEPGGRKKTEEPGDSYHVNARH
LLYPNCPVTRFPVPNEKVPWETEFLIYDPPFYTAERKDAAAMDPMGDTLEPLSTIQYN
VVDGLRDRRSFHGPYTVQAGLPLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRWRRNED
GAICRKSIKKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQEHWPSFENLL
KCGMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSNLHACDSGASIRWQ
VVDRRIPLYANHKTLLQKAAAEFGAHY"
BASE COUNT 1012 a 1671 c 1584 g 960 t
ORIGIN
1 gggtgtcagg tgcccctcag tgctgtgggg cctgcccacc cgtgctcctt ccccaggggc
61 ctggatcatc acaggggggt cccacaccgg cgtcatgaag caggtaggcg aggcggtgcg
121 ggacttcagc ctgagcagca gctacaagga aggcgagctc atcaccatcg gagtcgccac
181 ctggggcact gtccaccgcc gcgagggcct gatccatccc acgggcagct tccccgccga
241 gtacatactg gatgaggatg gccaagggaa cctgacctgc ctagacagca accactctca
301 cttcatcctc gtggacgacg ggacccacgg ccagtacggg gtggagattc ctctgaggac
361 caggctggag aagttcatat cggagcagac caaggaaaga ggaggtgtgg ccatcaagat
421 ccccatcgtg tgcgtggtgc tggagggcgg cccgggcacg ttgcacacca tcgacaacgc
481 caccaccaac ggcaccccct gtgtggttgt ggagggctcg ggccgcgtgg ccgacgtcat
541 tgcccaggtg gccaacctgc ctgtctcgga catcactatc tccctgatcc agcagaaact
601 gagcgtgttc ttccaggaga tgtttgagac cttcacggaa agcaggattg tcgagtggac
661 caaaaagatc caagatattg tccggaggcg gcagctgctg actgtcttcc gggaaggcaa
721 ggatggtcag caggacgtgg atgtggccat cttgcaggcc ttgctgaaag cctcacggag
781 ccaagaccac tttggccacg agaactggga ccaccagctg aaactggcag tggcatggaa
841 tcgcgtggac attgcccgca gtgagatctt catggatgag tggcagtgga agccttcaga
901 tctgcacccc acgatgacag ctgcactcat ctccaacaag cctgagtttg tgaagctctt
961 cctggaaaac ggggtgcagc tgaaggagtt tgtcacctgg gacaccttgc tctacctgta
1021 cgagaacctg gacccctcct gcctgttcca cagcaagctg caaaaggtgc tggtggagga
1081 tcccgagcgc ccggcttgcg cgcccgcggc gccccgcctg cagatgcacc acgtggccca
1141 ggtgctgcgg gagctgctgg gggacttcac gcagccgctt tatccccggc cccggcacaa
1201 cgaccggctg cggctcctgc tgcccgttcc ccacgtcaag ctcaacgtgc agggagtgag
1261 cctccggtcc ctctacaagc gttcctcagg ccatgtgacc ttcaccatgg accccatccg
1321 tgaccttctc atttgggcca ttgtccagaa ccgtcgggag ctggcaggaa tcatctgggc
1381 tcagagccag gactgcatcg cagcggcctt ggcctgcagc aagatcctga aggaactgtc
1441 caaggaggag gaggacacgg acagctcgga ggagatgctg gcgctggcgg aggagtatga
1501 gcacagagcc atcggggtct tcaccgagtg ctaccggaag gacgaagaga gagcccagaa
1561 actgctcacc cgcgtgtccg aggcctgggg gaagaccacc tgcctgcagc tcgccctgga
1621 ggccaaggac atgaagtttg tgtctcacgg gggcatccag gccttcctga ccaaggtgtg
1681 gtggggccag ctctccgtgg acaatgggct gtggcgtgtg accctgtgca tgctggcctt
1741 cccgctgctc ctcaccggcc tcatctcctt cagggagaag aggctgcagg atgtgggcac
1801 ccccgcggcc cgcgcccgtg ccttcttcac cgcacccgtg gtggtcttcc acctgaacat
1861 cctctcctac ttcgccttcc tctgcctgtt cgcctacgtg ctcatggtgg acttccagcc
1921 tgtgccctcc tggtgcgagt gtgccatcta cctctggctc ttctccttgg tgtgcgagga
1981 gatgcggcag ctcttctatg accctgacga gtgcgggctg atgaagaagg cagccttgta
2041 cttcagtgac ttctggaata agctggacgt cggcgcaatc ttgctcttcg tggcagggct
2101 gacctgcagg ctcatcccgg cgacgctgta ccccgggcgc gtcatcctct ctctggactt
2161 catcctgttc tgcctccggc tcatgcacat ttttaccatc agtaagacgc tggggcccaa
2221 gatcatcatt gtgaagcgga tgatgaagga cgtcttcttc ttcctcttcc tgctggctgt
2281 gtgggtggtg tccttcgggg tggccaagca ggccatcctc atccacaacg agcgccgggt
2341 ggactggctg ttccgagggg ccgtctacca ctcctacctc accatcttcg ggcagatccc
2401 gggctacatc gacggtgtga acttcaaccc ggagcactgc agccccaatg gcaccgaccc
2461 ctacaagcct aagtgccccg agagcgacgc gacgcagcag aggccggcct tccctgagtg
2521 gctgacggtc ctcctactct gcctctacct gctcttcacc aacatcctgc tgctcaacct
2581 cctcatcgcc atgttcaact acaccttcca gcaggtgcag gagcacacgg accagatttg
2641 gaagttccag cgccatgacc tgatcgagga gtaccacggc cgccccgccg cgccgccccc
2701 cttcatcctc ctcagccacc tgcagctctt catcaagagg gtggtcctga agactccggc
2761 caagaggcac aagcagctca agaacaagct ggagaagaac gaggaggcgg ccctgctatc
2821 ctgggagatc tacctgaagg agaactacct ccagaaccga cagttccagc aaaagcagcg
2881 gcccgagcag aagatcgagg acatcagcaa taaggttgac gccatggtgg acctgctgga
2941 cctggaccca ctgaagaggt cgggctccat ggagcagagg ttggcctccc tggaggagca
3001 ggtggcccag acagcccgag ccctgcactg gatcgtgagg acgctgcggg ccagcggctt
3061 cagctcggag gcggacgtcc ccactctggc ctcccagaag gccgcggagg agccggatgc
3121 tgagccggga ggcaggaaga agacggagga gccgggcgac agctaccacg tgaatgcccg
3181 gcacctcctc taccccaact gccctgtcac gcgcttcccc gtgcccaacg agaaggtgcc
3241 ctgggagacg gagttcctga tctatgaccc acccttttac acggcagaga ggaaggacgc
3301 ggccgccatg gaccccatgg gagacaccct ggagccactg tccacgatcc agtacaacgt
3361 ggtggatggc ctgagggacc gccggagctt ccacgggccg tacacagtgc aggccgggtt
3421 gcccctgaac cccatgggcc gcacaggact gcgtgggcgc gggagcctca gctgcttcgg
3481 acccaaccac acgctgtacc ccatggtcac gcggtggagg cggaacgagg atggagccat
3541 ctgcaggaag agcataaaga agatgctgga agtgctggtg gtgaagctcc ctctctccga
3601 gcactgggcc ctgcctgggg gctcccggga gccaggggag atgctacctc ggaagctgaa
3661 gcggatcctc cggcaggagc actggccgtc ttttgaaaac ttgctgaagt gcggcatgga
3721 ggtgtacaaa ggctacatgg atgacccgag gaacacggac aatgcctgga tcgagacggt
3781 ggccgtcagc gtccacttcc aggaccagaa tgacgtggag ctgaacaggc tgaactctaa
3841 cctgcacgcc tgcgactcgg gggcctccat ccgatggcag gtggtggaca ggcgcatccc
3901 actctatgcg aaccacaaga ccctcctcca gaaggcagcc gctgagttcg gggctcacta
3961 ctgactgtgc cctcaggctg ggcggctcca gtccatagac gttcccccca gaaaccaggg
4021 cttctctctc ctgagcctgg ccaggactca ggctgttcct gggccctgca catgatgggg
4081 tttggtggac ccagtgcccc tcacggctgc cgcaagtctg ctgcagatga cctcatgaac
4141 tggaaggggt caaggtgacc cgggaggaga gctcaagaca gggcacaggc tactcagagc
4201 tgaggggccc ctgggaccct tggccatcag gcgaggggct gggcctgtgc agctgggccc
4261 ttggccagag tccactccct tcctggctgt gtcaccccga gcagctcatc caccatggag
4321 gtcattggcc tgaggcaagt tccccggaga gtcggggtcc cctgtggccc cctcaggcct
4381 atgtctgtga ggaaggggcc ctgccactct ccccaagagg gcctccatgt ttcgaggtgc
4441 ctcaacatgg agccttgcct ggcctgggct aggggcactg tctgaactcc tgactgtcag
4501 gataaactcc gtgggggtac aggagcccag acaaagccca ggcctgtcaa gagacgcaga
4561 gggcccctgc cagggttggc cccagggacc ctgggacgag gctgcagaag ctctccctcc
4621 ctactccctg ggagccacgt gctggccatg tggccaggga cggcatgagc aggaggcggg
4681 gacgtggggg ccttctggtt tggtgtcaac agctcacagg agcgtgaacc atgagggccc
4741 tcaggagggg aacgtggtaa aacccaagac attaaatctg ccatctcagg cctggctggc
4801 tcttctgtgc tttccacaaa taaagttcct gacacgtcca gggccagggg ctgtgtgacg
4861 gctgcctgaa gttctcctcg atcccccggt gagcttcctg cagcctgtgg atgtcctgca
4921 gcccctcagc cctaccccca agtttctcct ctgacccatc agctccctgt cttcattttc
4981 ctaaacctgg gctccagcat cgtccccaag cccaccaggc caggatgcag gcatccacat
5041 gccctcctcc ttggcttccc ctgcgtggtg gtgccaatgt gccctggcac ccctgcagag
5101 gctccggatg gagcctgggg ctgcctggcc actgagcact ggccgaggtg atgcccaccc
5161 ttccctggac aggcctctgt cttccacctg acccaaagct ctctagccac ccccttgtcc
5221 ccagtat
//