LOCUS AB110791 1849 bp mRNA linear HUM 18-MAY-2004 DEFINITION Homo sapiens SNCAIP mRNA for synphilin-1d protein, transcript variant d, complete cds. ACCESSION AB110791 VERSION AB110791.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1849) AUTHORS Shimizu,N., Takayanagi,A., Lim,M.K. and Ohsawa,Y. TITLE Direct Submission JOURNAL Submitted (24-MAY-2003) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Shimizu Keio University School of Medicine, Molecular Biology; 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan REFERENCE 2 AUTHORS Lim,M.K., Ohsawa,Y., Kawamura,T., Asakawa,S., Takayanagi,A., Minoshima,S. and Shimizu,N. TITLE Identification and characterization of alternatively spliced form of human synphilin-1 JOURNAL Unpublished (2003) COMMENT This splice variant contains exon 1b (58..198) as in synphilin-1d (AB110791), but lacks exons 3 (131..1002), and exon 4 (1003..1182) found in Synphilin-1a (AB110788). FEATURES Location/Qualifiers source 1..1849 /chromosome="5" /db_xref="H-InvDB:HIT000242323" /db_xref="taxon:9606" /map="5q23.1-q23.3" /mol_type="mRNA" /organism="Homo sapiens" /tissue_type="testis" CDS 1..342 /codon_start=1 /gene="SNCAIP" /note="transcript variant d" /product="synphilin-1d protein" /protein_id="BAD19020.1" /translation="MEAPEYLDLDEIDFSDDISDNRSQGNRLQKLGLEDTDREDAMGF GSHRAKLTVVAALGACHCPENEYSVTSLKTIPELCRRCDTQNEDRSEWSVGVRTLDGE RNRSHCRTELF" BASE COUNT 556 a 464 c 464 g 365 t ORIGIN 1 atggaagccc ctgaatacct tgatttggat gaaattgact ttagtgatga catatctgac 61 aataggagtc aagggaacag gctacaaaag cttggattgg aggacacaga cagggaagat 121 gcaatgggct ttggttccca tagggccaaa ctgacagtag ttgctgccct gggagcttgc 181 cattgtcctg agaatgagta ttcagtcaca tcactcaaga cgatcccaga actgtgccga 241 agatgtgata cgcaaaacga agacagatca gaatggtcag ttggagtgcg tacgctggat 301 ggtgagcgaa acagaagcca ttgcagaact gagttgttct aaggattttc caagccttat 361 tcattacgca ggttgctatg gccaggaaaa gattcttctg tggcttcttc agtttatgca 421 agaacagggc atctcgttgg atgaagtaga ccaggatggc aacagtgccg ttcacgtagc 481 ctcacagcat ggctaccttg gatgcataca gaccttggtt gaatatggag caaatgtcac 541 catgcagaac cacgctgggg aaaagccctc ccagagcgcc gagcggcagg ggcacaccct 601 gtgctccagg tacctggtgg tggtggagac ctgcatgtcg ctggcctctc aagtggtgaa 661 gttaaccaag cagctaaagg aacaaacagt agaacgtgtc acgctgcaga accaactcca 721 acaatttcta gaagcccaga aatcagaggg caagtcactc ccttcttcac ccagttcacc 781 atcctcacct gcctccagaa agtcccagtg gaaatctcca gatgcagatg atgattctgt 841 agccaaaagc aagccaggag tccaagaggg gattcaggtt cttggaagcc tgtcagcctc 901 cagccgggct agacccaaag caaaagatga agattctgat aaaatcttac gccagttatt 961 gggaaaggaa atctcagaaa atgtctgcac ccaggaaaaa ctgtccttgg aattccagga 1021 tgctcaggct tcctctagaa attctaaaaa gatcccactg gagaagaggg aactgaagtt 1081 agccaggctg agacagctga tgcagaggtc actgagtgag tctgacacag actccaacaa 1141 ctctgaggac cccaagacta ccccagtgag gaaggctgac cgaccaaggc cgcagcccat 1201 tgtagaaagc gtagagagta tggacagcgc agaaagcctg cacctgatga ttaagaaaca 1261 caccttggca tcagggggac gcaggtttcc tttcagcatc aaggcctcca aatccctgga 1321 tggccacagc ccatctccca cctcagagag cagcgaacca gacttagaat cccagtatcc 1381 aggctcaggg agtattcctc caaaccagcc ctctggtgac cctcagcagc ccagccctga 1441 cagtactgct gcccagaaag ttgccacaag tcccaagagt gccctcaagt ctccatcttc 1501 caagcgtagg acatctcaga acttaaaact gagagttacc tttgaggagc ctgtggtgca 1561 gatggagcag cctagccttg aactgaatgg agaaaaagac aaagataagg gcaggactct 1621 ccagcggacc tccacaagta acgaatcggg ggatcaactg aaaaggcctt ttggagcctt 1681 tcgatctatc atggagacac taagtggcaa ccaaaacaat aataataact accaggcagc 1741 caaccagctg aaaacctcta cattgccctt gacctcactt gggaggaaga cagatgccaa 1801 gggaaaccct gccagctccg ctagcaaagg aaagaataag gcagcataa //