LOCUS AB110790 3126 bp mRNA linear HUM 18-MAY-2004
DEFINITION Homo sapiens SNCAIP mRNA for synphilin-1c protein, transcript
variant c, complete cds.
ACCESSION AB110790
VERSION AB110790.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3126)
AUTHORS Shimizu,N., Takayanagi,A., Lim,M.K. and Ohsawa,Y.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Nobuyoshi Shimizu
Keio University School of Medicine, Molecular Biology; 35
Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan
REFERENCE 2
AUTHORS Lim,M.K., Ohsawa,Y., Kawamura,T., Asakawa,S., Takayanagi,A.,
Minoshima,S. and Shimizu,N.
TITLE Identification and characterization of alternatively spliced form
of human synphilin-1
JOURNAL Unpublished (2003)
COMMENT This splice variant contains three extra exons insertion, exon 1b
(58..198), exon 6b (1564..1678), and exon 6c (1679..1788), found
in Synphilin-1a (AB110788).
FEATURES Location/Qualifiers
source 1..3126
/chromosome="5"
/db_xref="H-InvDB:HIT000242322"
/db_xref="taxon:9606"
/map="5q23.1-q23.3"
/mol_type="mRNA"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 1..1767
/codon_start=1
/gene="SNCAIP"
/note="transcript variant c"
/product="synphilin-1c protein"
/protein_id="BAD19019.1"
/translation="MEAPEYLDLDEIDFSDDISDNRSQGNRLQKLGLEDTDREDAMGF
GSHRAKLTVVAALGACHCPENEYSVTSLKTIPELCRRCDTQNEDRSVSSSSWNCGIST
LITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKVVEYQKGGESDL
GPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIKSSQQLASFTKV
TSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQH
KLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTPDCQLRAFHLQS
SAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLLPHLAADNLDKI
HDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLAIKNGQLECVRW
MVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQDGNSAV
HVASQHGYLGCIQTRLKIQGTWNGSETCLFTHHFSSYPPISSGLQCQGQEGVLFIPDQ
VGAATNKQVLFQNQLPETKSSY"
BASE COUNT 947 a 784 c 753 g 642 t
ORIGIN
1 atggaagccc ctgaatacct tgatttggat gaaattgact ttagtgatga catatctgac
61 aataggagtc aagggaacag gctacaaaag cttggattgg aggacacaga cagggaagat
121 gcaatgggct ttggttccca tagggccaaa ctgacagtag ttgctgccct gggagcttgc
181 cattgtcctg agaatgagta ttcagtcaca tcactcaaga cgatcccaga actgtgccga
241 agatgtgata cgcaaaacga agacagatca gtttctagct ctagctggaa ttgtggcatc
301 tcaactctta ttacaaacac gcaaaagccc acaggaatcg ctgatgtgta cagtaagttc
361 cgcccagtga agcgggtttc gccactgaaa catcagccag agactctgga gaacaatgaa
421 agtgatgacc aaaagaacca gaaagtggtt gagtaccaga aagggggtga gtctgacctg
481 ggcccccagc ctcaggagct tggccctgga gatggagtgg gcggcccacc aggtaagagc
541 tctgagccca gcacatcgct gggtgaactg gagcactacg acctcgacat ggatgagatt
601 ctggatgtgc cttatattaa atccagtcag cagcttgcct cttttaccaa ggtgacttca
661 gaaaaaagaa ttttgggctt atgcacaacc atcaatggcc tttctggcaa agcctgctct
721 acaggaagtt ctgagagctc atcatccaac atggcaccat tttgtgttct ttctcccgtg
781 aaaagccctc acttgagaaa agcatcagct gtcatccacg accagcacaa gctgtccact
841 gaagaaaccg agatctcacc tcctctggtt aaatgtggct ctgcatatga gcctgaaaac
901 cagagtaaag acttcctaaa caagacattt agtgatcctc atggtcgaaa agttgagaag
961 acaacaccag actgccagct cagggccttc cacctacaat cctcagcagc agaatccaaa
1021 ccagaagagc aggtcagtgg cctaaaccgg accagctccc aaggcccaga agaaaggagt
1081 gagtatctga aaaaagtgaa aagcatcttg aacattgtta aagaaggaca gatctctctc
1141 ctgccacacc tagctgcaga caatctagac aaaattcacg acgaaaatgg aaacaatcta
1201 ttacatattg cggcgtcaca gggacacgca gagtgtctac agcacctcac ttctttgatg
1261 ggagaagact gcctcaatga gcgcaacact gagaagttga ctccagcagg cctggccatt
1321 aagaatggtc agttggagtg cgtacgctgg atggtgagcg aaacagaagc cattgcagaa
1381 ctgagttgtt ctaaggattt tccaagcctt attcattacg caggttgcta tggccaggaa
1441 aagattcttc tgtggcttct tcagtttatg caagaacagg gcatctcgtt ggatgaagta
1501 gaccaggatg gcaacagtgc cgttcacgta gcctcacagc atggctacct tggatgcata
1561 cagactagac tcaagattca agggacttgg aatgggagtg agacatgcct ttttacacac
1621 cactttagct cctatccccc tatctcttct gggctgcagt gtcaaggaca agaaggagtt
1681 ctttttattc ctgatcaggt tggcgcagca acaaataaac aggtgttatt tcaaaaccaa
1741 ttaccagaga ccaaatccag ttactagagc ccaagcaaat gagaacagac cttggttgaa
1801 tatggagcaa atgtcaccat gcagaaccac gctggggaaa atccctccca gagcgccgag
1861 cggcaggggc acaccctgtg ctccaggtac ctggtggtgg tggagacctg catgtcgctg
1921 gcctctcaag tggtgaagtt aaccaagcag ctaaaggaac aaacagtaga acgtgtcacg
1981 ctgcagaacc aactccaaca atttctagaa gcccagaaat cagagggcaa gtcactccct
2041 tcttcaccca gttcaccatc ctcacctgcc tccagaaagt cccagtggaa atctccagat
2101 gcagatgatg attctgtagc caaaagcaag ccaggagtcc aagaggggat tcaggttctt
2161 ggaagcctgt cagcctccag ccgggctaga cccaaagcaa aagatgaaga ttctgataaa
2221 atcttacgcc agttattggg aaaggaaatc tcagaaaatg tctgcaccca ggaaaaactg
2281 tccttggaat tccaggatgc tcaggcttcc tctagaaatt ctaaaaagat cccactggag
2341 aagagggaac tgaagttagc caggctgaga cagctgatgc agaggtcact gagtgagtct
2401 gacacagact ccaacaactc tgaggacccc aagactaccc cagtgaggaa ggctgaccga
2461 ccaaggccgc agcccattgt agaaagcgta gagagtatgg acagcgcaga aagcctgcac
2521 ctgatgatta agaaacacac cttggcatca gggggacgca ggtttccttt cagcatcaag
2581 gcctccaaat ccctggatgg ccacagccca tctcccacct cagagagcag cgaaccagac
2641 ttagaatccc agtatccagg ctcagggagt attcctccaa accagccctc tggtgaccct
2701 cagcagccca gccctgacag tactgctgcc cagaaagttg ccacaagtcc caagagtgcc
2761 ctcaagtctc catcttccaa gcgtaggaca tctcagaact taaaactgag agttaccttt
2821 gaggagcctg tggtgcagat ggagcagcct agccttgaac tgaatggaga aaaagacaaa
2881 gataagggca ggactctcca gcggacctcc acaagtaacg aatcggggga tcaactgaaa
2941 aggccttttg gagcctttcg atctatcatg gagacactaa gtggcaacca aaacaataat
3001 aataactacc aggcagccaa ccagctgaaa acctctacat tgcccttgac ctcacttggg
3061 aggaagacag atgccaaggg aaaccctgcc agctccgcta gcaaaggaaa gaataaggca
3121 gcataa
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