LOCUS AB110789 2580 bp mRNA linear HUM 18-MAY-2004
DEFINITION Homo sapiens SNCAIP mRNA for synphilin-1b protein, transcript
variant b, complete cds.
ACCESSION AB110789
VERSION AB110789.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2580)
AUTHORS Shimizu,N., Takayanagi,A., Lim,M.K. and Ohsawa,Y.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Nobuyoshi Shimizu
Keio University School of Medicine, Molecular Biology; 35
Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan
REFERENCE 2
AUTHORS Lim,M.K., Ohsawa,Y., Kawamura,T., Asakawa,S., Takayanagi,A.,
Minoshima,S. and Shimizu,N.
TITLE Identification and characterization of alternatively spliced form
of human synphilin-1
JOURNAL Unpublished (2003)
COMMENT This splice variant contains exon 1b (58..198) as in synphilin-1d
(AB110791), but lacks exons 3 (131..1002), and exon 4 (1003..1182)
found in Synphilin-1a (AB110788).
FEATURES Location/Qualifiers
source 1..2580
/chromosome="5"
/db_xref="H-InvDB:HIT000242321"
/db_xref="taxon:9606"
/map="5q23.1-q23.3"
/mol_type="mRNA"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 1..2580
/codon_start=1
/gene="SNCAIP"
/note="transcript variant b"
/product="synphilin-1b protein"
/protein_id="BAD19018.1"
/translation="MEAPEYLDLDEIDFSDDISYSVTSLKTIPELCRRCDTQNEDRSA
SSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKV
VEYQKGGESDLGPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIK
SSQQLASFTKVTSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHL
RKASAVIHDQHKLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTP
DCQLRAFHLQSSAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLL
NGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDE
VDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLV
VVETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPA
SRKSQWKSPDADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLLGK
EISENVCTQEKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNN
SEDPKTTPVRKADRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKASKS
LDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALK
SPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLK
RPFGAFRSIMETLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKN
KAA"
BASE COUNT 777 a 659 c 623 g 521 t
ORIGIN
1 atggaagccc ctgaatacct tgatttggat gaaattgact ttagtgatga catatcttat
61 tcagtcacat cactcaagac gatcccagaa ctgtgccgaa gatgtgatac gcaaaacgaa
121 gacagatcag cttctagctc tagctggaat tgtggcatct caactcttat tacaaacacg
181 caaaagccca caggaatcgc tgatgtgtac agtaagttcc gcccagtgaa gcgggtttcg
241 ccactgaaac atcagccaga gactctggag aacaatgaaa gtgatgacca aaagaaccag
301 aaagtggttg agtaccagaa agggggtgag tctgacctgg gcccccagcc tcaggagctt
361 ggccctggag atggagtggg cggcccacca ggtaagagct ctgagcccag cacatcgctg
421 ggtgaactgg agcactacga cctcgacatg gatgagattc tggatgtgcc ttatattaaa
481 tccagtcagc agcttgcctc ttttaccaag gtgacttcag aaaaaagaat tttgggctta
541 tgcacaacca tcaatggcct ttctggcaaa gcctgctcta caggaagttc tgagagctca
601 tcatccaaca tggcaccatt ttgtgttctt tctcccgtga aaagccctca cttgagaaaa
661 gcatcagctg tcatccacga ccagcacaag ctgtccactg aagaaaccga gatctcacct
721 cctctggtta aatgtggctc tgcatatgag cctgaaaacc agagtaaaga cttcctaaac
781 aagacattta gtgatcctca tggtcgaaaa gttgagaaga caacaccaga ctgccagctc
841 agggccttcc acctacaatc ctcagcagca gaatccaaac cagaagagca ggtcagtggc
901 ctaaaccgga ccagctccca aggcccagaa gaaaggagtg agtatctgaa aaaagtgaaa
961 agcatcttga acattgttaa agaaggacag atctctctcc tgaatggtca gttggagtgc
1021 gtacgctgga tggtgagcga aacagaagcc attgcagaac tgagttgttc taaggatttt
1081 ccaagcctta ttcattacgc aggttgctat ggccaggaaa agattcttct gtggcttctt
1141 cagtttatgc aagaacaggg catctcgttg gatgaagtag accaggatgg caacagtgcc
1201 gttcacgtag cctcacagca tggctacctt ggatgcatac agaccttggt tgaatatgga
1261 gcaaatgtca ccatgcagaa ccacgctggg gaaaagccct cccagagcgc cgagcggcag
1321 gggcacaccc tgtgctccag gtacctggtg gtggtggaga cctgcatgtc gctggcctct
1381 caagtggtga agttaaccaa gcagctaaag gaacaaacag tagaacgtgt cacgctgcag
1441 aaccaactcc aacaatttct agaagcccag aaatcagagg gcaagtcact cccttcttca
1501 cccagttcac catcctcacc tgcctccaga aagtcccagt ggaaatctcc agatgcagat
1561 gatgattctg tagccaaaag caagccagga gtccaagagg ggattcaggt tcttggaagc
1621 ctgtcagcct ccagccgggc tagacccaaa gcaaaagatg aagattctga taaaatctta
1681 cgccagttat tgggaaagga aatctcagaa aatgtctgca cccaggaaaa actgtccttg
1741 gaattccagg atgctcaggc ttcctctaga aattctaaaa agatcccact ggagaagagg
1801 gaactgaagt tagccaggct gagacagctg atgcagaggt cactgagtga gtctgacaca
1861 gactccaaca actctgagga ccccaagact accccagtga ggaaggctga ccgaccaagg
1921 ccgcagccca ttgtagaaag cgtagagagt atggacagcg cagaaagcct gcacctgatg
1981 attaagaaac acaccttggc atcaggggga cgcaggtttc ctttcagcat caaggcctcc
2041 aaatccctgg atggccacag cccatctccc acctcagaga gcagcgaacc agacttagaa
2101 tcccagtatc caggctcagg gagtattcct ccaaaccagc cctctggtga ccctcagcag
2161 cccagccctg acagtactgc tgcccagaaa gttgccacaa gtcccaagag tgccctcaag
2221 tctccatctt ccaagcgtag gacatctcag aacttaaaac tgagagttac ctttgaggag
2281 cctgtggtgc agatggagca gcctagcctt gaactgaatg gagaaaaaga caaagataag
2341 ggcaggactc tccagcggac ctccacaagt aacgaatcgg gggatcaact gaaaaggcct
2401 tttggagcct ttcgatctat catggagaca ctaagtggca accaaaacaa taataataac
2461 taccaggcag ccaaccagct gaaaacctct acattgccct tgacctcact tgggaggaag
2521 acagatgcca agggaaaccc tgccagctcc gctagcaaag gaaagaataa ggcagcataa
//