LOCUS AB110788 2760 bp mRNA linear HUM 18-MAY-2004
DEFINITION Homo sapiens SNCAIP mRNA for synphilin-1a protein, transcript
variant a, complete cds.
ACCESSION AB110788
VERSION AB110788.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2760)
AUTHORS Shimizu,N., Takayanagi,A., Lim,M.K. and Ohsawa,Y.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Nobuyoshi Shimizu
Keio University School of Medicine, Molecular Biology; 35
Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan
REFERENCE 2
AUTHORS Lim,M.K., Ohsawa,Y., Kawamura,T., Asakawa,S., Takayanagi,A.,
Minoshima,S. and Shimizu,N.
TITLE Identification and characterization of alternatively spliced form
of human synphilin-1
JOURNAL Unpublished (2003)
COMMENT We use this transcript as a reference for comparison to other
splice variants (AB110789, AB110790, AB110791, AB110792, AB110793,
AB110794).
FEATURES Location/Qualifiers
source 1..2760
/chromosome="5"
/db_xref="H-InvDB:HIT000242320"
/db_xref="taxon:9606"
/map="5q23.1-q23.3"
/mol_type="mRNA"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 1..2760
/codon_start=1
/gene="SNCAIP"
/note="transcript variant a"
/product="synphilin-1a protein"
/protein_id="BAD19017.1"
/translation="MEAPEYLDLDEIDFSDDISYSVTSLKTIPELCRRCDTQNEDRSA
SSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKV
VEYQKGGESDLGPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIK
SSQQLASFTKVTSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHL
RKASAVIHDQHKLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTP
DCQLRAFHLQSSAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLL
PHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLA
IKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISL
DEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRY
LVVVETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSS
PASRKSQWKSPDADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLL
GKEISENVCTQEKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDS
NNSEDPKTTPVRKADRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKAS
KSLDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSA
LKSPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQ
LKRPFGAFRSIMETLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKG
KNKAA"
BASE COUNT 835 a 706 c 663 g 556 t
ORIGIN
1 atggaagccc ctgaatacct tgatttggat gaaattgact ttagtgatga catatcttat
61 tcagtcacat cactcaagac gatcccagaa ctgtgccgaa gatgtgatac gcaaaacgaa
121 gacagatcag cttctagctc tagctggaat tgtggcatct caactcttat tacaaacacg
181 caaaagccca caggaatcgc tgatgtgtac agtaagttcc gcccagtgaa gcgggtttcg
241 ccactgaaac atcagccaga gactctggag aacaatgaaa gtgatgacca aaagaaccag
301 aaagtggttg agtaccagaa agggggtgag tctgacctgg gcccccagcc tcaggagctt
361 ggccctggag atggagtggg cggcccacca ggtaagagct ctgagcccag cacatcgctg
421 ggtgaactgg agcactacga cctcgacatg gatgagattc tggatgtgcc ttatattaaa
481 tccagtcagc agcttgcctc ttttaccaag gtgacttcag aaaaaagaat tttgggctta
541 tgcacaacca tcaatggcct ttctggcaaa gcctgctcta caggaagttc tgagagctca
601 tcatccaaca tggcaccatt ttgtgttctt tctcccgtga aaagccctca cttgagaaaa
661 gcatcagctg tcatccacga ccagcacaag ctgtccactg aagaaaccga gatctcacct
721 cctctggtta aatgtggctc tgcatatgag cctgaaaacc agagtaaaga cttcctaaac
781 aagacattta gtgatcctca tggtcgaaaa gttgagaaga caacaccaga ctgccagctc
841 agggccttcc acctacaatc ctcagcagca gaatccaaac cagaagagca ggtcagtggc
901 ctaaaccgga ccagctccca aggcccagaa gaaaggagtg agtatctgaa aaaagtgaaa
961 agcatcttga acattgttaa agaaggacag atctctctcc tgccacacct agctgcagac
1021 aatctagaca aaattcacga cgaaaatgga aacaatctat tacatattgc ggcgtcacag
1081 ggacacgcag agtgtctaca gcacctcact tctttgatgg gagaagactg cctcaatgag
1141 cgcaacactg agaagttgac tccagcaggc ctggccatta agaatggtca gttggagtgc
1201 gtacgctgga tggtgagcga aacagaagcc attgcagaac tgagttgttc taaggatttt
1261 ccaagcctta ttcattacgc aggttgctat ggccaggaaa agattcttct gtggcttctt
1321 cagtttatgc aagaacaggg catctcgttg gatgaagtag accaggatgg caacagtgcc
1381 gttcacgtag cctcacagca tggctacctt ggatgcatac agaccttggt tgaatatgga
1441 gcaaatgtca ccatgcagaa ccacgctggg gaaaagccct cccagagcgc cgagcggcag
1501 gggcacaccc tgtgctccag gtacctggtg gtggtggaga cctgcatgtc gctggcctct
1561 caagtggtga agttaaccaa gcagctaaag gaacaaacag tagaacgtgt cacgctgcag
1621 aaccaactcc aacaatttct agaagcccag aaatcagagg gcaagtcact cccttcttca
1681 cccagttcac catcctcacc tgcctccaga aagtcccagt ggaaatctcc agatgcagat
1741 gatgattctg tagccaaaag caagccagga gtccaagagg ggattcaggt tcttggaagc
1801 ctgtcagcct ccagccgggc tagacccaaa gcaaaagatg aagattctga taaaatctta
1861 cgccagttat tgggaaagga aatctcagaa aatgtctgca cccaggaaaa actgtccttg
1921 gaattccagg atgctcaggc ttcctctaga aattctaaaa agatcccact ggagaagagg
1981 gaactgaagt tagccaggct gagacagctg atgcagaggt cactgagtga gtctgacaca
2041 gactccaaca actctgagga ccccaagact accccagtga ggaaggctga ccgaccaagg
2101 ccgcagccca ttgtagaaag cgtagagagt atggacagcg cagaaagcct gcacctgatg
2161 attaagaaac acaccttggc atcaggggga cgcaggtttc ctttcagcat caaggcctcc
2221 aaatccctgg atggccacag cccatctccc acctcagaga gcagcgaacc agacttagaa
2281 tcccagtatc caggctcagg gagtattcct ccaaaccagc cctctggtga ccctcagcag
2341 cccagccctg acagtactgc tgcccagaaa gttgccacaa gtcccaagag tgccctcaag
2401 tctccatctt ccaagcgtag gacatctcag aacttaaaac tgagagttac ctttgaggag
2461 cctgtggtgc agatggagca gcctagcctt gaactgaatg gagaaaaaga caaagataag
2521 ggcaggactc tccagcggac ctccacaagt aacgaatcgg gggatcaact gaaaaggcct
2581 tttggagcct ttcgatctat catggagaca ctaagtggca accaaaacaa taataataac
2641 taccaggcag ccaaccagct gaaaacctct acattgccct tgacctcact tgggaggaag
2701 acagatgcca agggaaaccc tgccagctcc gctagcaaag gaaagaataa ggcagcataa
//