LOCUS AB085691 4489 bp mRNA linear HUM 20-FEB-2008
DEFINITION Homo sapiens hsmg-5 mRNA for SMG-5, complete cds.
ACCESSION AB085691
VERSION AB085691.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4489)
AUTHORS Yamashita,A., Ohnishi,T., Kashima,I. and Ohno,S.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shigeo Ohno
Yokohama City University School of medicene, Department of
Molecular Biology; 3-9, Fuku-ura, Yokohama City Kanazawa-ku,
Kanagawa 236-0004, Japan
REFERENCE 2
AUTHORS Yamashita,A., Ohnishi,T., Kashima,I. and Ohno,S.
TITLE Human SMG-5 interacts with phosphorylated form of hUPF1 and is
involved in regulation of nonsense-mediated mRNA decay
JOURNAL Unpublished (2002)
COMMENT
FEATURES Location/Qualifiers
source 1..4489
/db_xref="H-InvDB:HIT000061430"
/db_xref="taxon:9606"
/mol_type="mRNA"
/organism="Homo sapiens"
CDS 78..3128
/codon_start=1
/function="nonsense-mediated mRNA decay"
/gene="hsmg-5"
/product="SMG-5"
/protein_id="BAC53623.1"
/transl_table=1
/translation="MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAY
QEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIH
SRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSAS
GKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQL
GTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSP
GKKRCKDIKRLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLS
LASEDEEEYESGYAFLPDLLIFQMVIICLMCVHSLERAGSKQYSAAIAFTLALFSHLV
NHVNIRLQAELEEGENPVPAFQSDGTDEPESKEPVEKEEEPDPEPPPVTPQVGEGRKS
RKFSRLSCLRRRRHPPKVGDDSDLSEGFESDSSHDSARASEGSDSGSDKSLEGGGTAF
DAETDSEMNSQESRSDLEDMEEEEGTRSPTLEPPRGRSEAPDSLNGPLGPSEASIASN
LQAMSTQMFQTKRCFRLAPTFSNLLLQPTTNPHTSASHRPCVNGDVDKPSEPASEEGS
ESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSL
WNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELPDLPSSLLLPEDMALRNLPPL
RAAHRRFNFDTDRPLLSTLEESVVRICCIRSFGHFIARLQGSILQFNPEVGIFVSIAQ
SEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPY
LVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFK
KGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTI
ITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG"
BASE COUNT 996 a 1286 c 1285 g 922 t
ORIGIN
1 gccggagacg gcagtgttgg cggtagtggt gggtggcagg ggcctgtgac cgggagctgc
61 ccccggaccc gggcaccatg agccaaggcc cccccacagg ggagagcagc gagcccgaag
121 caaaagtcct ccacactaag cggctttacc gggctgtggt ggaggctgtg catcgacttg
181 acctcatcct ttgcaacaaa actgcttatc aagaagtatt caaaccagaa aacattagcc
241 tgaggaacaa gctgcgtgag ctctgcgtca agcttatgtt cctgcaccca gtggactatg
301 ggagaaaggc tgaggagctg ctgtggagaa aggtatacta tgaagttatc cagcttatca
361 agactaacaa aaagcacatc cacagccgga gcactttgga atgtgcctac aggacgcacc
421 tggttgctgg tattggcttc taccagcatc tccttctcta tatccagtcc cactaccagc
481 tggaactgca gtgctgcatc gactggaccc atgtcactga ccccctcata ggatgcaaga
541 agccagtgtc tgcctcaggg aaggagatgg attgggcaca gatggcatgt caccgatgtc
601 tggtgtatct gggggatttg tcccgatatc agaatgaatt agctggcgta gataccgagc
661 tgctagccga gagattttac taccaagccc tgtcagtagc tcctcagatt ggaatgccct
721 tcaatcagct gggcaccctg gcaggcagca agtactataa tgtggaagcc atgtattgct
781 acctgcgctg catccagtca gaagtgtcct ttgagggagc ctatgggaac ctcaagcggc
841 tgtatgacaa ggcagccaaa atgtaccacc aactgaagaa gtgtgagact cggaaactgt
901 ctcctggcaa aaagcgatgt aaagacatta aaaggttgct agtgaacttt atgtatctgc
961 aaagcctcct acagcccaaa agcagctccg tggactcaga gctgacctca ctttgccagt
1021 cagtcctgga ggacttcaac ctctgcctct tctacctgcc ctcctcaccc aacctcagcc
1081 tggccagtga ggatgaggag gagtatgaga gtggatatgc tttcctcccg gaccttctca
1141 tctttcaaat ggtcatcatc tgccttatgt gtgtgcacag cttggagaga gcaggatcca
1201 agcagtacag tgcagccatt gccttcaccc tggccctctt ttcccacctc gtcaatcatg
1261 tcaacatacg gctgcaggct gagctggaag agggcgagaa tcccgtcccg gcattccaga
1321 gtgatggcac agatgaacca gagtccaagg aacctgtgga gaaagaggag gagccagatc
1381 ctgagcctcc tcctgtaaca ccccaagtgg gtgagggcag aaagagccgt aagttctctc
1441 gcctctcctg tctccgccgt cgccgccacc cacccaaagt tggtgatgac agtgacctga
1501 gtgaaggctt tgaatcggac tcaagccatg actcagcccg ggccagtgag ggctcagaca
1561 gtggctctga caagagtctt gaaggtgggg gaacggcctt tgatgctgaa acagactcgg
1621 aaatgaatag ccaggagtcc cgatcagact tggaagatat ggaggaagag gaggggacac
1681 ggtcaccaac cctggagccc cctcggggca gatcagaggc tcccgattcc ctcaatggcc
1741 cactgggccc cagtgaggct agcattgcca gcaatctaca agccatgtcc acccagatgt
1801 tccagactaa gcgctgcttc cgactggccc ccacctttag caacctgctc ctccagccca
1861 ccaccaaccc tcatacctcg gccagccaca ggccttgcgt caatggggat gtagacaagc
1921 cttcagagcc agcctctgag gagggctctg agtcggaggg gagtgagtcc agtggacgct
1981 cctgtcggaa tgagcgcagc atccaggaga agcttcaggt cctgatggcc gaaggtctgc
2041 ttcctgctgt gaaagtcttc ctggactggc ttcggaccaa ccccgacctc atcatcgtgt
2101 gtgcacagag ctctcaaagt ctgtggaacc gcctgtctgt gttgctgaat ctgttgcctg
2161 ctgctggtga actccaggag tctggcctgg ccttgtgtcc tgaggtccaa gatcttcttg
2221 aaggttgtga actgcctgac ctcccctcta gccttctgct cccagaggac atggctcttc
2281 gtaacctgcc cccgctccga gctgcccaca gacgctttaa ctttgacacg gatcggcccc
2341 tgctcagcac cttagaggag tcagtggtgc gcatctgctg catccgcagc tttggtcatt
2401 tcatcgcccg cctgcaaggc agcatcctgc agttcaaccc agaggttggc atcttcgtca
2461 gcattgccca gtctgagcag gagagcctgc tgcagcaggc ccaggcacag ttccgaatgg
2521 cacaggagga agctcgtcgg aacaggctca tgagagacat ggctcagcta cgacttcagc
2581 tcgaagtgtc tcagctggag ggcagcctgc agcagcccaa ggcccagtca gccatgtctc
2641 cctacctcgt ccctgacacc caggccctct gccaccatct ccctgtcatc cgccaactgg
2701 ccaccagtgg ccgcttcatt gtcatcatcc caaggacagt gatcgatggc ctggatttgc
2761 tgaagaagga acacccaggg gcccgggatg ggattcggta cctggaggca gagtttaaaa
2821 aaggaaacag gtacattcgc tgccagaaag aggtgggaaa gagctttgag cggcataagc
2881 tgaagaggca ggatgcagat gcctggactc tctataagat cctagacagc tgcaaacagc
2941 tgactctggc ccagggggca ggtgaggagg atccgagtgg catggtgacc atcatcacag
3001 gccttccact ggacaacccc agcgtgcttt caggccccat gcaggcagcc ctgcaggccg
3061 ctgcccacgc cagtgtggac atcaagaatg ttctggactt ctacaagcag tggaaggaaa
3121 ttggttgata ctgaccccca ggccctgcag tggggctgac tccagatctc tcctgccctc
3181 cctggcagcc aggaccagca cctgtagtca ccccaccaca cgcagactca tgcacgcaca
3241 caggagggag gcctagctgc tcagaggctg cagggagggc ccaggagccg gctgggaggg
3301 tggggtccct ttgttgccaa gacgttagga aagcgaggaa agtgcttgga ttaggagagt
3361 cttgtgggcc cctggccagc cttcctgcct cagctcccct gctgtctcca ggggcaggtg
3421 gtaggcatgg gtacctgcat ttcactggag tgggttcttg gatctctgag gggaaggaac
3481 agcaaaagag gcccttcttc ctcacccaag atgcagggtg gttggggcca ggagtttgga
3541 ccctctaggt cttgggggaa gagctgggta atacctggtg tctgagtgat tctctgcaga
3601 cccttcccct cctcaaggat cacccatcct cctttcagcc ccctttatgg ggaccaggca
3661 gctctggagc cagccacagg ggctgttaga gaagcaaggc ctggagtggc ctgcaccgag
3721 tagcagggtc agggttcgtg tgctcctcct cctgctgcag gggctgcaca tcccattgcc
3781 ccacttctgc tttgtgtctc cctctgtcta gcttccaggg cagggagcag gccccaccta
3841 gggctgcagg cagtctggcc tgtgccagca cggtctcctg tgcccaccag ccccacaggt
3901 gctgtgcttt gtgctcttgg ctgctgtgct gggacagaat gggatgccag gaagagaaga
3961 aagggggtgc agtctgaggc caccaccccc cttcctatct aagggagggc tgaagacaag
4021 gggccggcat tcagtgggca gcagaaagga gaggcccctt gaagctgctc agtcagaggc
4081 ccccgtccct ccttttgcct tccgcaggac tgaagacctg aaggggctgg cttttggagt
4141 gttgaggtga atatctggga gcagagatca tgaatagctc agggcagtga atggcgcacc
4201 aagagcaggg ctgtgtgtgg gaggctgcag ccaggattgc ctcagctcct ccccctcagg
4261 ctgggaggat agcacaggct aggggctcgg ggtggagggt ctcagctctg ctgcccccac
4321 cccagtacta gcctagcttc ccaagctgtg gcttagagga tagttggctt cctgcctctc
4381 tcctctaaaa tagcaagtct gggaaatcct ggggtgagtg gagtcacccc actcccagtt
4441 gctggcagag actgagacta aagcatcact taataaaccc cccaagccc
//