LOCUS AB040538 3732 bp mRNA linear HUM 28-NOV-2000
DEFINITION Homo sapiens NUP98 mRNA for nucleoporin, complete cds.
ACCESSION AB040538
VERSION AB040538.1
KEYWORDS DDX10.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3732)
AUTHORS Arai,Y.
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yasuhito Arai
National Cancer Center Research Institute, Radiobiology Division;
5-1-1, Tsukiji, Chuo-ku, Tokyo 104-0045, Japan
REFERENCE 2
AUTHORS Arai,Y., Kaneko,Y., Kubo,T., Arai,K., Hosoda,F. and Ohki,M.
TITLE Molecular analysis of the chromosomal breakpoints and
identification of the repetitive sequences near the breakpoints of
NUP98 in therapy-related leukemia with inv(11)(p15q22)
JOURNAL Unpublished (2000)
COMMENT
FEATURES Location/Qualifiers
source 1..3732
/db_xref="H-InvDB:HIT000059287"
/db_xref="taxon:9606"
/mol_type="mRNA"
/organism="Homo sapiens"
exon 1..148
/gene="NUP98"
/number=1
exon 149..252
/gene="NUP98"
/number=2
CDS 177..2990
/codon_start=1
/gene="NUP98"
/note="exon 10B is minor exon"
/product="nucleoporin"
/protein_id="BAB18537.1"
/transl_table=1
/translation="MFNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGS
SNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLF
SSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGT
TIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQ
VGAGTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQ
QNQQTTSLFSKPFGQATTTQNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTA
TNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFG
NKPTLTLGTNTNTSNFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFG
NNQPKIGGPLGTGAFGAPGFNTTTATLGFGAPQAPVALTDPNASAAQQAVLQQHINSL
TYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQ
TTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASP
SEYPENGERFSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSN
SVDDTIVALNMRAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVG
YYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKE
VVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVS
RKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPASQ
TTPLQMALNGKPAPPPQVEKKGQ"
exon 253..354
/gene="NUP98"
/number=3
exon 355..531
/gene="NUP98"
/number=4
exon 532..671
/gene="NUP98"
/number=5
exon 672..779
/gene="NUP98"
/number=6
exon 780..960
/gene="NUP98"
/number=7
exon 961..1124
/gene="NUP98"
/number=8
exon 1125..1262
/gene="NUP98"
/number=9
exon 1263..1350
/gene="NUP98"
/number=10
exon 1351..1401
/gene="NUP98"
/note="exon 10B (minor exon)"
exon 1402..1494
/gene="NUP98"
/number=11
exon 1495..1635
/gene="NUP98"
/number=12
exon 1636..1770
/gene="NUP98"
/number=13
exon 1771..1957
/gene="NUP98"
/number=14
exon 1958..2074
/gene="NUP98"
/number=15
exon 2075..2373
/gene="NUP98"
/number=16
exon 2374..2487
/gene="NUP98"
/number=17
exon 2488..2626
/gene="NUP98"
/number=18
exon 2627..2804
/gene="NUP98"
/number=19
exon 2805..3680
/gene="NUP98"
/number=20
BASE COUNT 1077 a 814 c 823 g 1018 t
ORIGIN
1 ggccctctgc gcgctgcgcc cgaagcggcg gtcggtggca ggggtggtag cggcggcggc
61 gacggtttcg tgggggccgc gcgctgctct gtgagcggcg ggtggcagca ggggactcct
121 gacacttccc cttccccacc gaaccgcgct ttctgaaaca aagactcatt ttgaagatgt
181 ttaacaaatc atttggaaca ccctttgggg gtggcacagg tggctttggc acaacttcaa
241 catttggaca gaatactggc tttggcacta ctagtggagg ggcatttgga acatctgcat
301 ttggttctag caacaatact ggaggcctct ttggaaattc acagactaaa ccaggaggat
361 tgtttggaac cagttcattt agccagccag ctacctccac aagcactggc tttgggtttg
421 gtacgtcaac aggaacagca aataccttgt ttggaactgc aagcacaggg accagtctct
481 tctcatccca aaacaatgcc tttgcacaaa ataaaccaac tggctttggc aattttggaa
541 ccagtactag cagtggagga ctctttggaa ccacaaatac cacctctaat ccttttggca
601 gcacatctgg ctccctcttt gggccaagta gttttacagc tgctcctact gggactacta
661 ttaaatttaa ccctccaact ggtacagata ctatggtcaa agctggagtt agcactaaca
721 taagtaccaa gcaccagtgt attactgcta tgaaagaata tgaaagcaag tcactagagg
781 aacttcgttt agaggattat caggctaaca ggaagggccc acagaaccag gtgggagcag
841 gtaccacaac tggcttgttt gggtcttctc cagccacttc cagcgcaaca ggactcttca
901 gctcctccac cactaattca ggctttgcat atggtcagaa caaaactgcc tttggaacta
961 gtacaactgg atttggaaca aatccaggtg gtctctttgg ccaacagaat cagcagacta
1021 ccagcctctt cagcaaacca tttggccagg ctacaaccac ccagaacact ggcttttcct
1081 ttggtaatac cagcaccata ggacagccaa gcaccaacac catgggatta tttggagtaa
1141 cccaagcctc acagcctgga ggtctttttg ggacagctac aaacaccagc actgggacag
1201 catttggaac aggaacaggt ctctttgggc agaccaatac tggatttggt gctgttggtt
1261 cgaccctgtt tggcaataac aagcttacta catttggaag cagcacaacc agtgcacctt
1321 catttggtac aaccagtggc gggctctttg gtaacaaacc aaccctgact ttaggaacca
1381 atacaaacac ttctaatttt ggttttggca caaataccag tgggaatagt atttttggaa
1441 gtaaaccagc acctgggact cttggaactg ggcttggtgc aggatttgga acagctcttg
1501 gtgctggaca ggcatctttg tttgggaaca accaacctaa gattggaggg cctcttggta
1561 caggagcctt tggggcccct ggatttaata ctacgacagc cactttgggc tttggagccc
1621 cccaggcccc agtagctttg acagatccaa atgcttctgc tgcccagcag gctgttctcc
1681 agcagcacat caatagtcta acatactcac cttttggaga ctctcctctc ttccggaatc
1741 cgatgtcaga ccctaagaag aaggaagaga gattgaaacc aacaaatcca gcagcccaga
1801 aggctcttac tacacctact cattataaac tgacaccccg ccctgccact agagtccggc
1861 caaaggcttt acaaacaaca ggcacagcca agtcacatct ctttgatggg ctggatgacg
1921 atgaaccatc cctagccaat ggagcattca tgcccaagaa gagcattaag aagttggttt
1981 tgaagaacct taataatagc aatctctttt ctcctgttaa tcgtgattca gaaaatctag
2041 cttcaccatc tgaatatcca gaaaatggag agagatttag tttcctaagc aaacctgttg
2101 atgagaatca ccagcaggat ggagatgaag attcccttgt ttcacatttt tatactaacc
2161 ctattgccaa acctattcct caaaccccag aaagtgctgg aaataaacac agcaacagca
2221 acagtgtgga tgataccatt gttgcattaa acatgcgtgc tgctttgcga aatgggctgg
2281 aaggaagcag tgaagaaacg tcttttcatg atgagtcact tcaggatgac cgagaagaaa
2341 tagaaaataa ttcttaccat atgcacccag caggtattat tctcactaag gttggttact
2401 atactattcc atctatggat gaccttgcta aaattaccaa tgaaaaagga gagtgcattg
2461 tctctgattt cactattggt cggaaaggtt atggttcaat ctattttgaa ggagatgtga
2521 atttgacaaa tctaaatttg gatgatattg tgcatatccg gaggaaagaa gtagttgtct
2581 acttagatga taaccaaaaa ccacctgtgg gtgaagggct aaataggaag gctgaagtta
2641 cattggatgg agtttggcca acagataaaa catctcgttg tttaataaag agcccagatc
2701 gccttgctga tatcaactat gaaggaagat tggaagcagt ttcaaggaaa cagggagctc
2761 aattcaaaga ataccggcct gaaactggtt cttgggtgtt taaggtctcc catttttcta
2821 agtatggcct tcaggattct gatgaagagg aggaggagca tccgtctaaa actagtacaa
2881 agaagttgaa gactgctcct ttgcctcctg caagccagac tacgcccttg cagatggctc
2941 ttaatggcaa acctgcacct ccacctcagg tagagaaaaa aggacagtga atttgaatgg
3001 aatccgtgat accgaagttg aaagcaagtc attcagctaa tacaaagctg ttttatgacc
3061 cttggaactt tgaagagtac aaacattggc aatcacgttg aaacaagtgc aagggagggc
3121 gtgaggtctt gcaggcatct gtctttttac tggagagatt taaagaattc tcttgctgtt
3181 tggattattc ctctacagat tgtcattttt aaaccctttg ttctctctca tttggacttg
3241 ctgaattctc tgctcagtga ttaacttaag atttgctcat gtgggttcat gcacagtaaa
3301 ttctgccttt attgactacc tgatgtgcag tttaatcttt ttctttacct ccatggtttt
3361 ttaaaagtta aattagcttt ctgaaagggt ttttaatctc cattttttta aagttgtttg
3421 cttatacttc gggtaacctt gatatttgta ttttaatagt acataatctt tatgaaaaat
3481 agtttgggaa tgtaaatgaa ttattatttg gcttggggag attagggcct acattgttta
3541 tcgcaattac ttgtatcatt gatacgggat ttctttgtaa agcatcctct acctctcagc
3601 tgctgaaagc tagacctttg gtattttcca tgctataatt cttatggctg ctgaaatgtg
3661 tggtttttat gatttattaa ataatctctt aggaggcaaa aaaaaaaaaa aaaaaaaaaa
3721 aaaaaaaaaa aa
//