LOCUS AB026187 4603 bp mRNA linear HUM 15-FEB-2000
DEFINITION Homo sapiens PCDH-X mRNA for protocadherin-Xa, complete cds.
ACCESSION AB026187
VERSION AB026187.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4603)
AUTHORS Yoshida,K.
TITLE Direct Submission
JOURNAL Submitted (14-APR-1999) to the DDBJ/EMBL/GenBank databases.
Contact:Kenichi Yoshida
Institute of Medical Science, University of Tokyo, Department of
Virology; 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
REFERENCE 2
AUTHORS Yoshida,K. and Sugano,S.
TITLE Identification of a novel protocadherin gene (PCDH11) on the human
XY homology region in Xq21.3
JOURNAL Genomics 62, 540-543 (1999)
COMMENT
FEATURES Location/Qualifiers
source 1..4603
/chromosome="X"
/db_xref="H-InvDB:HIT000058847"
/db_xref="taxon:9606"
/dev_stage="fetal"
/map="Xq21.3"
/mol_type="mRNA"
/organism="Homo sapiens"
/tissue_type="fetal brain"
CDS 846..3911
/codon_start=1
/gene="PCDH-X"
/note="member of the protocadherin family"
/product="protocadherin-Xa"
/protein_id="BAA90765.1"
/transl_table=1
/translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPVGIQVSNTTF"
BASE COUNT 1441 a 939 c 858 g 1365 t
ORIGIN
1 ctggtggtcc agtacctcca aagatatgga atacactcct gaaatatcct gaaaactttt
61 ttttttcaga atcctttaat aagcagttat gtcaatctga aagttgctta cttgtacttt
121 atattaatag ctattcttgt ttttcttatc caaagaaaaa tcctctaatc cccttttcac
181 atgatagttg ttaccatgtt taggcattag tcacatcaac ccctctcctc tcccaaactt
241 ctcttcttca aatcaaactt tattagtccc tcctttataa tgattccttg cctcgtttta
301 tccagatcaa ttttttttca ctttgatgcc cagagctgaa gaaatggact actgtataaa
361 ttattcattg ccaagagaat aattgcattt taaacccata ttataacaaa gaataatgat
421 tatattttgt gatttgtaac aaataccctt tattttccct taactattga attaaatatt
481 ttaattattt gtattctctt taactatctt ggtatattaa agtattatct tttatatatt
541 tatcaatggt ggacactttt ataggtactc tgtgtcattt ttgatactgt aggtatctta
601 tttcatttat ctttattctt aatgtacgaa ttcataatat ttgattcaga acaaatttat
661 cactaattaa cagagtgtca attatgctaa catctcattt actgatttta atttaaaaca
721 gtttttgtta acatgcatgt ttagggttgg cttcttaata atttcttctt cctcttctct
781 ctctcctctt cttttggtca gtgttgtgcg ggttaataca acaaactgta acaagtgtac
841 ctggtatgga cttgttgtcc gggacgtaca ttttcgcggt cctgctagca tgcgtggtgt
901 tccactctgg cgcccaggag aaaaactaca ccatccgaga agaaatgcca gaaaacgtcc
961 tgataggcga cttgttgaaa gaccttaact tgtcgctgat tccaaacaag tccttgacaa
1021 ctgctatgca gttcaagcta gtgtacaaga ccggagatgt gccactgatt cgaattgaag
1081 aggatactgg tgagatcttc actactggcg ctcgcattga tcgtgagaaa ttatgtgctg
1141 gtatcccaag ggatgagcat tgcttttatg aagtggaggt tgccattttg ccggatgaaa
1201 tatttagact ggttaagata cgttttctga tagaagatat aaatgataat gcaccattgt
1261 tcccagcaac agttatcaac atatcaattc cagagaactc ggctataaac tctaaatata
1321 ctctcccagc ggctgttgat cctgacgtag gaataaacgg agttcaaaac tacgaactaa
1381 ttaagagtca aaacattttt ggcctcgatg tcattgaaac accagaagga gacaagatgc
1441 cacaactgat tgttcaaaag gagttagata gggaagagaa ggatacctac gtgatgaaag
1501 taaaggttga agatggtggc tttcctcaaa gatccagtac tgctattttg caagtgagtg
1561 ttactgatac aaatgacaac cacccagtct ttaaggagac agagattgaa gtcagtatac
1621 cagaaaatgc tcctgtaggc acttcagtga cacagctcca tgccacagat gctgacatag
1681 gtgaaaatgc caagatccac ttctctttca gcaatctagt ctccaacatt gccaggagat
1741 tatttcacct caatgccacc actggactta tcacaatcaa agaaccactg gatagggaag
1801 aaacaccaaa ccacaagtta ctggttttgg caagtgatgg tggattgatg ccagcaagag
1861 caatggtgct ggtaaatgtt acagatgtca atgataatgt cccatccatt gacataagat
1921 acatcgtcaa tcctgtcaat gacacagttg ttctttcaga aaatattcca ctcaacacca
1981 aaattgctct cataactgtg acggataagg atgcggacca taatggcagg gtgacatgct
2041 tcacagatca tgaaatccct ttcagattaa ggccagtatt cagtaatcag ttcctcctgg
2101 agactgcagc atatcttgac tatgagtcca caaaagaata tgccattaaa ttactggctg
2161 cagatgctgg caaacctcct ttgaatcagt cagcaatgct cttcatcaaa gtgaaagatg
2221 aaaatgacaa tgctccagtt ttcacccagt ctttcgtaac tgtttctatt cctgagaata
2281 actctcctgg catccagttg acgaaagtaa gtgcaatgga tgcagacagt gggcctaatg
2341 ctaagatcaa ttacctgcta ggccctgatg ctccacctga attcagcctg gattgtcgta
2401 caggcatgct gactgtagtg aagaaactag atagagaaaa agaggataaa tatttattca
2461 caattctggc aaaagataac ggggtaccac ccttaaccag caatgtcaca gtctttgtaa
2521 gcattattga tcagaatgac aatagcccag ttttcactca caatgaatac aacttctatg
2581 tcccagaaaa ccttccaagg catggtacag taggactaat cactgtaact gatcctgatt
2641 atggagacaa ttctgcagtt acgctctcca ttttagatga gaatgatgac ttcaccattg
2701 attcacaaac tggtgtcatc cgaccaaata tttcatttga tagagaaaaa caagaatctt
2761 acactttcta tgtaaaggct gaggatggtg gtagagtatc acgttcttca agtgccaaag
2821 taaccataaa tgtggttgat gtcaatgaca acaaaccagt tttcattgtc cctccttcca
2881 actgttctta tgaattggtt ctaccgtcca ctaatccagg cacagtggtc tttcaggtaa
2941 ttgctgttga caatgacact ggcatgaatg cagaggttcg ttacagcatt gtaggaggaa
3001 acacaagaga tctgtttgca atcgaccaag aaacaggcaa cataacattg atggagaaat
3061 gtgatgttac agaccttggt ttacacagag tgttggtcaa agctaatgac ttaggacagc
3121 ctgattctct cttcagtgtt gtaattgtca atctgttcgt gaatgagtcg gtgaccaatg
3181 ctacactgat taatgaactg gtgcgcaaaa gcactgaagc accagtgacc ccaaatactg
3241 agatagctga tgtatcctca ccaactagtg actatgtcaa gatcctggtt gcagctgttg
3301 ctggcaccat aactgtcgtt gtagttattt tcatcactgc tgtagtaaga tgtcgccagg
3361 caccacacct taaggctgct cagaaaaaca agcagaattc tgaatgggct accccaaacc
3421 cagaaaacag gcagatgata atgatgaaga aaaagaaaaa gaagaagaag cattccccta
3481 agaacttgct gcttaatttt gtcactattg aagaaactaa ggcagatgat gttgacagtg
3541 atggaaacag agtcacacta gaccttccta ttgatctaga agagcaaaca atgggaaagt
3601 acaattgggt aactacacct actactttca agcccgacag ccctgatttg gcccgacact
3661 acaaatctgc ctctccacag cctgccttcc aaattcagcc tgaaactccc ctgaattcga
3721 agcaccacat catccaagaa ctgcctctcg ataacacctt tgtggcctgt gactctatct
3781 ccaagtgttc ctcaagcagt tcagatccct acagcgtttc tgactgtggc tatccagtga
3841 cgaccttcga ggtacctgtg tccgtacaca ccagaccggt aggtatccaa gtttctaaca
3901 caactttcta actatttttt tattattatt ttcagttgat gtagaacttt acaaaatcta
3961 ttgacttcaa agagggatca aaacaatcat attctacaga tgtacccaat agatatatgg
4021 attcaattaa gtttggtaga agatgagaac aaaataacta ctgatttagg aaaattggat
4081 gcagaataat aattatagta ggggcaattt tgtctgtaga tggcagtatg acaattcttg
4141 ctagagaata tattgaaaaa aacttcaaca caaagggttg tagcactgtc ctcagtacca
4201 ttgtgtgcat gaggatcaga atagtctggg ctagatacat cacattaaag cttttcagaa
4261 tctgataaat agctctaaat actaatgata ttgagaagcc tagcttcact tgggaaaatc
4321 tgtggctgtt cacagaaatt cagcaccaag ttattccccc catactctac caggccttca
4381 ggtcctcata aagaaaagtg tcgttttcag attaggaact caaaattatt ttggtgcatc
4441 aaatctacag tcacacaata taacaagaat gggattagaa aaatgaaagc ctactcattc
4501 tcatctttaa gccagagaat gaaatatata tgaggtctct ggatagctat ttaaatattt
4561 gcatatttat gcaaggtatt ttgagccctt cagaagacat tct
//