LOCUS Y00157 5310 bp DNA linear ROD 14-NOV-2006 DEFINITION Murine Lyt-2.2 gene for differentiation antigen. ACCESSION Y00157 VERSION Y00157.1 KEYWORDS alternate splicing; differentiation antigen; glycoprotein; immunoglobulin superfamily; Lyt-2.2 gene. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5310) AUTHORS Nakauchi H., Tagawa M., Nolan G.P., Herzenberg L.A. TITLE Isolation and characterization of the gene for the murine T cell differentiation antigen and immunoglobulin-related molecule, Lyt-2 JOURNAL Nucleic Acids Res. 15(10), 4337-4347(1987). PUBMED 3495785 COMMENT alternative splicing of the two intracytoplasmic exons (IV and V) yields the 38 kDa alpha and 34 kDa alpha' Lyt2-polypeptides; the 34 kDa alpha' Lyt2-polypeptide is formed by splicing of the transmembrane donor site (exon 3) directly to the fifth exon, thus deleting exon 4 from the mRNA; loss of exon 4 effects a frameshift FEATURES Location/Qualifiers source 1..5310 /organism="Mus musculus" /strain="B10.A" /mol_type="genomic DNA" /clone_lib="lambda J1 phage" /clone="p6CCA" /tissue_type="liver" /db_xref="taxon:10090" regulatory 94..99 /note="TATA-box" /regulatory_class="promoter" mRNA join(123..897,1394..1498,1649..1759) precursor_RNA 123..4477 /note="primary transcript" misc_feature 303..317 /note="cd/pd regulatory sequence" misc_feature 326..340 /note="cd/pd regulatory sequence" CDS join(456..897,1394..1498,1649..1759,2772..2802,3730..3781) /product="Lyt-2.2 protein" /db_xref="GOA:P01731" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013106" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR015468" /db_xref="InterPro:IPR036179" /db_xref="MGI:MGI:88346" /db_xref="PDB:1BQH" /db_xref="PDB:1NEZ" /db_xref="PDB:2ARJ" /db_xref="PDB:2ATP" /db_xref="PDB:3B9K" /db_xref="PDB:3DMM" /db_xref="UniProtKB/Swiss-Prot:P01731" /protein_id="CAA68352.2" /translation="MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAE LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVYMASSHNKITWDEKLNSSKLFS AMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTP SPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICY HRSRKRVCKCPRPLVRQEGKPRPSEKIV" intron 898..1393 /number=1 exon 1394..1498 /number=2 intron 1499..1648 /number=2 exon 1649..1759 /number=3 intron 1760..2771 /number=3 exon 2772..2802 /number=4 intron 2803..3729 /number=4 exon 3730..4477 /number=5 misc_feature 3735..3737 /note="translation stop in 34 kDa Lyt2" misc_feature 4434..4438 /note="cactg motif" regulatory 4457..4463 /regulatory_class="polyA_signal_sequence" misc_feature 4475..4479 /note="cactg motif" polyA_site 4477..4477 /note="polyA site" BASE COUNT 1312 a 1283 c 1315 g 1400 t ORIGIN 1 aagcttggga acccagaaac ctatctacaa gaaaaagaaa agggagagtg ggcactcctc 61 tcccttcatg tcctgtcact ctcatatttt ttttattaag atttaatctt tatccttctt 121 ctttcagcca ctcttgcaga agaacaattc ctaagggtcc cttccaagtg ttttctcttc 181 cccaaatctc agttttcaat tcctcccact tgctctgcaa gggtgcattc tcactctgag 241 ttcccaggcc cctaaaaggt ggttgacact ctttggtggg gactttgggt gacatcatat 301 cctcacatag gaaatcagct ctgtctgcag ctggctaaag gagcagtttc cccgacccta 361 cacgcctccc ccaccgcacc tcctccgccc tgttcctggg cccctcccct agagccctag 421 cttgacctaa gctgcttgct ggtggagagc acaccatggc ctcaccgttg acccgctttc 481 tgtcgctgaa cctgctgctg ctgggtgagt cgattatcct ggggagtgga gaagctaagc 541 cacaggcacc cgaactccga atctttccaa agaaaatgga cgccgaactt ggtcagaagg 601 tggacctggt atgtgaagtg ttggggtccg tttcgcaagg atgctcttgg ctcttccaga 661 actccagctc caaactcccc cagcccacct tcgtttatat ggcttcatcc cacaacaaga 721 taacgtggga cgagaagctg aattcgtcga aactgttttc tgccatgagg gacacgaata 781 ataagtacgt tctcaccctg aacaagttca gcaaggaaaa cgaaggctac tatttctgct 841 cagtcatcag caactcggtg atgtacttca gttctgtcgt gccagtcctt cagaaaggtt 901 tggaagtgga ggttcccgtc tcctgggttt taggggtcac atctgaacaa gtttcacgca 961 gattccctct tcttaaatct cttggggcct cttggaggtg atttctatac tgtccccatt 1021 ttacagacca aaaagttgag gctgaggtgc tgggtggact tggaagtgat ttttaaacgc 1081 cctggatctg ggctggagtc tggatgcacg tgtgatcctg cccctgttgg ctccaggata 1141 gaattttggt attgactcca gctttgggtt ggtggaggcc gcagtcgctt agatctgatc 1201 taggcacatt ggcccaaatc acacttggct ccgcgtgtgg cagcagcgga gtagcccagc 1261 acgtatccag gggttccttc ttcctctagt taaaagctag gaaacggctc cttcttgggt 1321 aaaggctaag tggaaagggg ctggtgcatc cacaattcca gcttgacccg caggcaccct 1381 attgcttttg cagtgaactc tactactacc aagccagtgc tgcgaactcc ctcacctgtg 1441 caccctaccg ggacatctca gccccagaga ccagaagatt gtcggccccg tggctcaggt 1501 tagtgctctc aagcgattga gataagcaga tagcctgggg tggaaaatcc tgatcttgga 1561 ggggagacct ggaccgggag acgtgctggg ggcagggttg ggggctgtcc agagggtttc 1621 taaattccat tcattcggat cttgtcagtg aaggggaccg gattggactt cgcctgtgat 1681 atttacatct gggcaccctt ggccggaatc tgcgtggccc ttctgctgtc cttgatcatc 1741 actctcatct gctaccacag taagttctgg gagttccccc catccagccc ccaccacccc 1801 cccaccccac ccccgccaag agactgcttt gtgctccagg aggagtctgc agctttgtgc 1861 ctgctccaga cagccttcag ggagattact tttaggttgg ggaaaagggg gagggcgttc 1921 cagctgacct ataggaccag tgtagtgggt tctttcttga aggcaggaga caggtatacc 1981 accccactgc tctttccacc ctctgggaac ttttcagaac agagccctgt tccaggatcc 2041 ccaagagcag ccaaatcagc agttagcaca gccaggataa cttaagcaca ctaaggaggg 2101 gtttacatac cgtgagacca gggcccaaga aggctgagtc acaaccatga ctggcttgag 2161 atttgcctta atcccacctc acaaaccatt cactcctctg agtctataca gtgattacac 2221 caaccaggtc aacagattcc cagagacact cacatctcga tttacaatgc ctctcccttc 2281 ccaagaaagg gtttcctttc atgttgtcta gactatccta caactagtta ggtagcctag 2341 gataacccca aacttctgat ctgatccttc tgccttcctt cattttggga gtgctgggac 2401 aacgggcata ggcaccaaac caaatttaaa atgttttctt ttattatgta tttatgcatt 2461 tatttatttg ggtttttttt aaaggcaggg tttctctgtg tagccctggg tgtcctggaa 2521 ctcacctgta gaccagggtc ggcctcaaac tcagaaatcc gcctgcctct gccttccaag 2581 tggtgggatt aaagcgtggg tgaccacagc ctggctgaaa tgttttattt ttaattggaa 2641 cttgaggaaa gagtaggcaa agtagtgttc actccaagtg ttgaagagtt ctgagactca 2701 aagttctgga gcagaggaag ctatagaaac ggtatctggc aggtattcat tctcccttct 2761 tccttgtcta gggagccgaa agcgtgtttg caaatgtccc aggtgagtaa cgtctctgat 2821 ctgtaggtct cgtcacgctg ggcagccgtg gtcccagtgg tgaggtttgg gaatctttcc 2881 tagagagaga ggtcatgcca gtgaagtcct ggtggcaggg gaccaggagt cagccagatc 2941 ctgaactagg agaagcagaa agctggtgag gtgctggaat tcattcctga gaaaaggaag 3001 gaccacagac gtgctcagtg ggacagcagc aggactgagt tgcaggggac tagctgaacg 3061 aggaaaggtg ttcagtattt tcaggacctg gagtgagctt ggtagcttct gcaagacaat 3121 tacttatgct tactttttct gaatactctc attttgaaat gtaaaataga aaagcccgtc 3181 cttgcactaa accccggagc tatgaagatt agttccctag acagtcacag gtccaagtct 3241 cagcctaaag cagagggttt ctacagggcc actcaggtct ctcacttttc gtgtgacatt 3301 aagctcagca ctgtgcttgg ttgagggtgc actcacactc ttctggattc tcagttttgg 3361 gctactggga taagagtcag gccaccgctg acttaaacaa cagctctaat ctcacctcct 3421 ggactcagaa gtccagaagc ctaactgggc atagatgcta cttcagctgc ctaagagttg 3481 tgtgacctga ggcagggtct ttaaactctc ctgagcagtg cagacccctc tttgggtgcc 3541 ttgaggacga aaggaaaggg tggctgaggt aattcattca ttaatgtcta aggacaaatt 3601 ctcaaagcca tcaaaaactg agtgtgtgtg tgtgcgcgcg cgtgcgcgcg cgctcgcgtg 3661 ctggtactac tttaaagagg ttctagccac aatgatagtt gatctcttgt gtatctttgt 3721 ctctttcagg ccgctagtca gacaggaagg caagcccaga ccttcagaga aaattgtgta 3781 aaatggcacc gccaggaagc tacaactact acatgacttc agagatctct tcttgcaaga 3841 gccaggccct cctttttcaa gtttcctgct gtcttatgta ttgccctctg tattgtttta 3901 gtaggggtgt gatggggaca gttccttttt ctttatgaat tctctttgac acaaagcata 3961 cttgtatgca tacaatggga gtaatgagca gactgtaaca ccagagctag ttccagtttc 4021 ggggtccatg tcgctggtgg cctcagcacc cacttgatat aaatctcctg tctgcccatc 4081 atatagaaga agctgaagat cagaggtgga aacagcagga tctgtagacc cggagagaac 4141 ccaagctaga ggaaccctca ctgactggtg cagggatctc acccccatcc cctgagctct 4201 ctgtttaggt atgtgtcttt agtatagcat gcttgtgcct caaactgcaa ggaagcaagt 4261 ggtatgaatc tgtgatctgc tcagctctgg ctgtgaggat cagatgtaac aaatcaaagt 4321 caggagaact gcctttagcg gtgcacctgg acatcagagc cccttgtaag aactgggaaa 4381 ttgctggcag tctagtggag cgtacggtaa atctggaaaa cactcccctc tgtcactgaa 4441 ggctgtagta gaatccaatt aaagctattc aaaccactgc cgcagaccct ctcctgtgtc 4501 tgcgtggaat gggtctctcg agcaggtggg caaagcgtag gattaaactg acaaacagat 4561 gcacacagga gaggcgttga atctgaatgt aatgtcaggt cgaacctcgg actttttata 4621 atacagaaaa aattccaggg gcgatatgtc acaccagaca aggtacactg aaatttacca 4681 gatacaagag aatgacttcg aaaggaattt gcaggaacta gataaatgtt tacaatagag 4741 attatcagcc ctgcctagga tcatcagcct agtgccaggt aagaatttca cactttagtt 4801 taaaagcacc agggggtaat tactcttggc aggcctcaag aataatgtag tgtcacggac 4861 ccctaaattc ctaggccttg ttaaatctta tcttgtctgg agaatcccca tttatcagga 4921 gagtatctca acttgctctt ggcatggaat gtagcctgta ctaaagattt ttatctcagt 4981 gagattccca ggctctttct gcagaccaga tgagctaatg gccttgttta ttgtaatgct 5041 taattagtta ctgaataagt taaactcctt gctgttatct gggatcttgg aacaatgggg 5101 gcgctggggg ggggggcggg ggggctttag ctatgtcaga attcaatctt aaaaggcact 5161 tacaataggg taatgcttaa tagagggcac atggatccat acactagact aacgcgggag 5221 tggaaaatta atttatggtt tagagggaac gccagactcc aggagggaat ttctgtgaaa 5281 ctcttttcct tgtgggcagc ttccaagctt //