LOCUS EMCPOLYP 7835 bp RNA linear VRL 07-OCT-2021
DEFINITION Cardiovirus A1 strain Ruckert polyprotein gene, complete cds.
ACCESSION M81861
VERSION M81861.1
KEYWORDS .
SOURCE cardiovirus A1
ORGANISM cardiovirus A1
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus;
Cardiovirus A.
REFERENCE 1 (bases 1 to 7835)
AUTHORS Duke,G.M., Hoffman,M.A. and Palmenberg,A.C.
TITLE Sequence and structural elements that contribute to efficient
encephalomyocarditis virus RNA translation
JOURNAL J. Virol. 66 (3), 1602-1609 (1992)
PUBMED 1310768
COMMENT Original source text: Encephalomyocarditis virus (strain Ruckert)
cDNA to genomic RNA.
FEATURES Location/Qualifiers
source 1..7835
/organism="cardiovirus A1"
/mol_type="genomic RNA"
/strain="Ruckert"
/db_xref="taxon:2870365"
CDS 834..7712
/codon_start=1
/product="polyprotein"
/protein_id="AAA43037.1"
/translation="MATTMEQETCAHSLTFEECPKCSALQYRNGFYLLKYDEEWYPEE
LLTDGEDDVFDPELDMEVVFELQGNSTSSDKNNSSSEGNEGVIINNFYSNQYQNSIDL
SANAAGSDPPRTYGQFSNLFSGAVNAFSNMLPLLADQNTEEMENLSDRVSQDTAGNTV
TNTQSTVGRLVGYGTVHDGEHPASCADTASEKILAVERYYTFKVNDWTSTQKPFEYIR
IPLPHVLSGEDGGVFGAALRRHYLVKTGWRVQVQCNASQFHAGGLLVFMAPEYPTLDA
FAMDNRWSKDNLPNGTRTQTNKKGPFAMDHQNFWQWTLYPHQFLNLRTNTTVDLEVPY
VNIAPTSSWTQHASWTLVIAVVAPLTYSTGASTSLDITASIQPVRPVFNGLRHETLSR
QSPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPSNYMVGEYKDFLEIAQIPTFIGNK
IPNAVPYIEASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFT
GTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMV
GTDQVNITNADGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSPQ
GVENAEKGVTENTNATADFVAQPVYLPENQTKVAFFYNRSSPIGAFTVKSGSLESGFA
PFSNGTCPNSVILTPGPQFDPAYDQLRPQRLTEIWGNGNEETSKVFPLKSKQDYSFCL
FSPFVYYKCDLEVTLSPHTSGNHGLLVRWCPTGTPTKPTTQVLHEVSSLSEGRTPQVY
SAGPGISNQISFVVPYNSPLSVLSAVWYNGHKRFDNTGSLGIAPNSDFGTLFFAGTKP
DIKFTVYLRYKNKRVFCPRPTVFFPWPTSGDKIDMTPRAGVLMLESPNALDISRTYPT
LHVLIQFNHRGLEVRLFRHGHFWAETRADVILRSKTKQVSFLSNGNYPSMDSRAPWNP
WKNTYQAVLRAEPCRVTMDIYYKRVRPFRLPLVQKEWPVREENVFGLYRIFNAHYAGY
FADLLIHDIETNPGPFMFRPRKQVFQTQGAAVSSMAQTLLPNDLASKAMGSAFTALLD
ANEDAQKAMKIIKTLSSLSDAWENVKETLNNPEFWKQLLSRCVQLIAGMTIAVMHPDP
LTLLCLGTLTAAEITSQTSLCEEIAAKFKTIFITPPPRFPTISLFQQQSPLKQVNDIF
SLAKNLDWAVKTVEKVVDWFGTWIVQEEKEQTLDQLLQRFPEHAKRISDLRNGMAAYV
ECKESFDFFEKLYNQAVKEKRTGIAAVCEKFRQKHDHATARCEPVVIVLRGDAGQGKS
LSSQVIAQAVSKTIFGRQSVYSLPPDSDFFDGYENQFAAIMDDLGQNPDGSDFTTFCQ
MVSTTNFLPNMASLERKGTPFTSQLVVATTNLPEFRPVTIAHYPAVERRITFDYSVSA
GPVCSKTEAGYKVLDVERAFRPTGEAPLPCFQNNCLFLEKAGLQFRDNRTKEIISLVD
VIERAVARIERKKKVLTTVQTLVAQGPVDEVSFHSVVQQLKARQQATDEQLEELQEAF
AKVQERNSVFSDWLKISAMLCAATLALSQVVKMAKAVKQMVKPDLVRVQLDEQEQGPY
NETARVKPKTLQLLDIQGPNPVMDFEKYVAKHVTAPIGFVYPTGVSTQTCLLVRGRTL
VVNRHMAESDWTSIVVRGVTHARSTVKILAIAKAGKETDVSFIRLSSGPLFRDNTSKF
VKAGDVLPTGAAPVTGIMNTDIPMMYTGTFLKAGVSVPVETGQTFNHCIHYKANTRKG
WCGSALLADLGGSKKILGIHSAGSMGIAAASIVSQEMIRAVVNAFEPQGALERLPDGP
RIHVPRKTALRPTVARQVFQPAYAPAVLSKFDPRTEADVDEVAFSKHTSNQESLPPVF
RMVAKEYANRVFTLLGKDNGRLTVKQALEGLEGMDPMDRNTSPGLPYTALGMRRTDVV
DWESATLIPFAAERLRKMNEGDFSEVVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHC
ILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDST
HSVAMFRLLAEEFFTPENGFDPLTREYLESLAISTHAFEEKRFLITGGLPSGCAATSM
LNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLDFDKVRASLAKTGYK
ITPANTTSTFPLNSTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKL
TSITMLAVHSGKQEYDRLFAPFREVGVVVPSFESVEYRWRSLFW"
mat_peptide 1035..1244
/product="protein 1A"
mat_peptide 1245..2012
/product="protein 1B"
mat_peptide 2013..2705
/product="protein 1C"
mat_peptide 2706..3536
/product="protein 1D"
mat_peptide 3537..3965
/product="protein 2A"
mat_peptide 3966..4415
/product="protein 2B"
mat_peptide 4416..5390
/product="protein 2C"
mat_peptide 5391..5714
/product="protein 3AB"
mat_peptide 5715..6329
/product="protein 3C"
mat_peptide 6330..7709
/product="protein 3D"
BASE COUNT 2013 a 2030 c 1846 g 1946 t
ORIGIN
1 ttgaaagccg ggggtgggag atccggattg ccagtctgct cgatatcgca ggctgggtcc
61 gtgactaccc actccccctt tcaacgtgaa ggctacgata gtgccagggc gggtactgcc
121 gtaagtgcca ccccaaaata acaacagacc cccccccccc cccccccccc cccccccccc
181 cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc
241 cccccccccc cccccccccc ccctctccct cccccccccc taacgttact ggccgaagcc
301 gcttggaata aggccggtgt gcgtttgtct atatgttatt ttccaccata ttgccgtctt
361 ttggcaatgt gagggcccgg aaacctggcc ctgtcttctt gacgagcatt cctaggggtc
421 tttcccctct cgccaaagga atgcaaggtc tgttgaatgt cgtgaaggaa gcagttcctc
481 tggaagcttc ttgaagacaa acaacgtctg tagcgaccct ttgcaggcag cggaaccccc
541 cacctggcga caggtgcctc tgcggccaaa agccacgtgt ataagataca cctgcaaagg
601 cggcacaacc ccagtgccac gttgtgagtt ggatagttgt ggaaagagtc aaatggctct
661 cctcaagcgt attcaacaag gggctgaagg atgcccagaa ggtaccccat tgtatgggat
721 ctgatctggg gcctcggtgc acatgcttta catgtgttta gtcgaggtta aaaaacgtct
781 aggccccccg aaccacgggg acgtggtttt cctttgaaaa acacgatgat aatatggcca
841 caaccatgga acaagagact tgcgcgcact ctctcacttt tgaggaatgc ccaaaatgct
901 ctgctctaca ataccgtaat ggattttacc tgctaaagta tgatgaagaa tggtacccag
961 aggagttatt gactgatgga gaggatgatg tctttgatcc cgaattagac atggaagtcg
1021 ttttcgagtt acagggcaat tccacctcct cagacaagaa taactcctcc tcggaaggca
1081 atgaaggtgt gatcatcaat aacttttact ccaaccaata tcaaaactcc attgacctct
1141 ctgctaatgc agccgggtct gacccaccca gaacctacgg tcaattttcg aatctctttt
1201 cgggcgcagt gaatgccttt tctaatatgc ttccattgct agctgatcaa aatacagaag
1261 aaatggagaa tctgtctgat cgagtgtctc aagacactgc cggcaatacg gtcacaaaca
1321 cccagtcaac agtgggccgt cttgtcggtt atggtaccgt tcatgatgga gagcatccgg
1381 catcatgtgc tgacactgct tcagaaaaga tcctggcggt ggaaaggtac tacaccttca
1441 aggttaatga ttggacatca acacaaaagc cctttgagta catccgcatt ccccttcctc
1501 acgtcctgtc cggtgaagat ggtggtgtct ttggtgcggc cctccgccgg cactacctgg
1561 tgaaaactgg atggcgggtg caagttcagt gcaacgcctc tcaattccac gctggaggtt
1621 tgctggtgtt catggcacca gagtatccaa ccttagatgc ttttgccatg gacaaccgtt
1681 ggtccaagga taacctgcct aatggaacca gaactcagac aaacaaaaag ggaccatttg
1741 ccatggacca tcagaacttc tggcagtgga ccttgtatcc ccatcaattc ctgaatctga
1801 gaactaacac cacagtggat cttgaggtgc catatgtaaa catagccccc acttcctcct
1861 ggacacaaca tgcttcctgg actttggtga ttgcagtggt tgctcccctg acatactcaa
1921 ccggggcttc taccagtttg gatatcaccg cttctattca gccagtaagg cctgtcttta
1981 atggcctccg gcatgagaca ctttctagac agtcgcccat tccggtcaca attagagaac
2041 atgctggtac ctggtattct actctgccag acagcacagt gcctatttat ggcaagactc
2101 ctgttgctcc atccaattac atggtaggcg aatacaagga cttcctggag atagctcaga
2161 ttccaacctt tattgggaat aagatcccta atgctgtccc ctacattgag gcatccaaca
2221 cagccgtcaa gacccaaccg ctggccacct atcaagtgac cttgtcctgc tcctgtctgg
2281 ccaatacatt cttggccgct ttgtctagaa actttgctca gtaccgggga tcattggttt
2341 atacctttgt gttcactggg accgcgatga tgaagggcaa gttcctcatt gcctacaccc
2401 cacctggagc gggcaagccc actagtcgag accaagccat gcaggcgact tatgcgattt
2461 gggatttggg gctaaattct tcttactcct tcactgtgcc ttttatttct cccactcact
2521 tccgcatggt aggtactgac caagtcaaca tcactaatgc ggatggctgg gttaccgtgt
2581 ggcagctcac tcccctcact tacccaccag gatgcccgac ctctgctaag atactaacaa
2641 tggtgagcgc agggaaggat ttctcactca agatgcctat ctcacctgcc ccctggagcc
2701 ctcagggagt agaaaacgct gaaaaagggg tcactgaaaa cacaaacgca actgctgact
2761 ttgtggctca accagtttac ttgcctgaga accaaacgaa ggtggctttc ttctataata
2821 ggtccagtcc cattggtgcc ttcaccgtga agtccggcag tctagaatct ggttttgccc
2881 cgttctctaa tgggacttgc ccgaactcag tgatactgac ccctgggccc caatttgacc
2941 ccgcctatga ccaactcagg ccacagcgtc tgacagaaat ttggggcaat ggaaatgagg
3001 agacctcaaa agtctttccg cttaaatcca aacaggatta ttccttctgc ctcttctccc
3061 cctttgtgta ttataaatgt gatttagaag tgactcttag tcctcacact tcaggcaacc
3121 atgggctgtt ggtgaggtgg tgtcccactg gtacaccaac caagcccact acccaggttc
3181 tccatgaagt aagttccctc tcagaaggca gaacccccca ggtttatagt gccggacctg
3241 gcatttcaaa tcagatttcc tttgtagttc cttacaattc tccactttca gtcctatcag
3301 ctgtctggta taatggacac aagagatttg acaacactgg gagcttgggc attgccccta
3361 attctgattt cggcactctg ttctttgctg gcacaaagcc tgacattaaa ttcacagtct
3421 acttgagata caagaataag agagtttttt gcccacgtcc gactgtcttt ttcccctggc
3481 ccacttccgg agacaagatt gatatgaccc cgagagctgg agtcttgatg ctagagagtc
3541 caaatgccct agacatttca agaacatacc ccacgttaca tgttctcatt caattcaacc
3601 atagaggttt ggaggttaga ttgtttagac atggacactt ttgggctgaa acacgtgcgg
3661 acgtgattct gagatcaaag accaaacagg tctctttcct gagcaacggg aactacccgt
3721 caatggactc tagagctccc tggaatcctt ggaagaatac ctaccaggcg gttctaagag
3781 cagaaccatg tagagtgacc atggatatat attataagag agtcaggcct tttagactgc
3841 ccctggttca gaaggaatgg cccgtgcgag aggagaacgt tttcggtttg taccggatct
3901 tcaatgccca ctacgctggt tactttgcgg acctactgat tcatgacatt gagacaaatc
3961 cagggccctt catgtttaga ccaaggaaac aggttttcca gacccaagga gcggcagtgt
4021 catcaatggc tcaaacccta ctgccgaacg accttgccag caaagctatg ggatcagctt
4081 ttacggcttt gctcgatgcc aacgaggacg cccaaaaagc aatgaagatt ataaagacat
4141 taagttctct atcggatgca tgggaaaatg taaaagaaac actaaacaac ccagagttct
4201 ggaagcagct cttgagcaga tgtgtgcagc tgattgcagg gatgacaata gcagtgatgc
4261 atccggaccc tttgactctg ctctgcttag gaacattgac ggccgccgag attacaagcc
4321 agacaagtct gtgcgaagaa atagcagcta agttcaagac aattttcatc actcctccac
4381 cacggtttcc cacaatctct cttttccaac aacaatcccc cttgaaacag gtaaatgata
4441 ttttctccct agccaagaac ctggactggg ccgtcaagac tgtggaaaag gtggttgatt
4501 ggtttgggac atggatagta caggaggaaa aggaacagac cctagatcag ctcttgcagc
4561 gtttccccga acatgcgaag cgcatttctg atctccggaa tggaatggcc gcctatgtag
4621 agtgcaagga gagttttgat ttctttgaaa agctgtacaa tcaggcagtg aaagagaaga
4681 gaacgggtat cgccgccgtc tgtgaaaaat tcagacagaa gcatgaccac gccaccgctc
4741 ggtgtgagcc agtcgtgatt gtgctccgcg gagacgcggg gcaagggaaa tctttatcaa
4801 gtcaggttat tgcccaggcc gtctccaaga ccattttcgg ccggcaatct gtgtattccc
4861 ttccccccga ttcggatttc tttgatggct atgaaaatca gtttgcagca ataatggatg
4921 atctagggca aaatcctgat ggctctgatt tcactacgtt ctgtcagatg gtttcgacta
4981 ccaattttct ccccaatatg gctagtctag agagaaaggg cacccccttt acatctcagc
5041 ttgtggtggc aactaccaat ctgcctgagt ttagacctgt cacaatagcc cattaccctg
5101 ctgttgagag aaggataact ttcgactatt cagtgtctgc tggtccagtc tgctccaaaa
5161 cagaggccgg gtataaggtt ttggatgttg aaagagcctt taggcctacc ggtgaggctc
5221 ctcttccatg cttccagaat aactgccttt tccttgagaa agctgggctc cagttcagag
5281 ataaccgaac taaagagatc atttccctgg tagatgtgat tgagagagcc gtggctagga
5341 ttgaaaggaa gaagaaagtt ctcacaaccg tgcagaccct tgtggcacaa ggtccagtag
5401 acgaggtcag tttccattcc gtagtccagc agcttaaagc aagacagcaa gcgacagatg
5461 aacagcttga ggaattgcaa gaggctttcg cgaaagtaca ggagcgtaac tctgtgtttt
5521 ctgattggtt gaagatttct gcaatgttgt gtgctgcgac tctggcactt tcccaagttg
5581 tcaagatggc caaggcggtg aagcagatgg tcaagcctga tctggttcgt gtgcaattgg
5641 atgagcagga gcagggacct tacaatgaga cagcgagagt taaaccaaaa acactgcagt
5701 tgttggacat tcagggacca aaccctgtga tggactttga aaaatatgta gccaaacatg
5761 taaccgcccc cattggtttt gtctacccca ctggggtgag cacccagact tgcctccttg
5821 tgagaggccg caccttggta gtaaatagac acatggccga gtctgactgg acttccatag
5881 tagtgcgtgg agtcacacac gcccgctcta ctgttaaaat tttggccata gctaaagcag
5941 gcaaagagac tgacgtatct ttcatccgcc tctcttctgg tcctctattc agagacaata
6001 catccaaatt tgtcaaggct ggtgatgtac ttcctactgg tgccgctcca gtcacgggga
6061 taatgaacac ggacataccc atgatgtaca caggaacctt cctgaaagct ggtgtgtcag
6121 tcccagtgga aaccggccag acctttaatc actgtattca ttacaaggct aacacacgaa
6181 agggctggtg tggatcagcc ctactggcag atcttggagg aagcaagaaa atccttggca
6241 tccattctgc tggctctatg ggaatagccg ccgcctcgat tgtgtcacag gagatgattc
6301 gggcggtagt gaatgccttt gagccacagg gtgctctcga gagattgcca gatgggcccc
6361 gtattcacgt accacgtaaa acagcactac gccccaccgt tgcccgtcaa gtcttccaac
6421 cagcatatgc cccggctgtt ctatcgaaat ttgaccctag aacagaggct gatgtagatg
6481 aagtggcttt ctccaaacat acctccaacc aggaaagcct cccaccagtg tttagaatgg
6541 tagccaaaga gtatgccaat agagttttca ccttgctggg aaaagacaat ggccgtctga
6601 ctgtaaagca ggctttggaa ggactggagg ggatggaccc catggacagg aacacctccc
6661 cggggcttcc atatactgcg ctaggaatgc gcagaacaga tgtcgtagat tgggaatcag
6721 ccaccctgat cccgtttgcg gcagaaagat taagaaaaat gaatgaagga gacttttccg
6781 aagttgtcta tcaaacattc ctcaaggatg agcttagacc gatagagaag gttcaagccg
6841 ccaagacacg gattgtagat gttccaccat ttgagcattg cattctgggt agacaattgt
6901 tgggaaagtt tgcatcaaag ttccagaccc aaccgggtct ggaactagga tcagccattg
6961 gatgtgaccc agatgtacac tggactgcct tcggtgtcgc catgcaaggt tttgagcgtg
7021 tctacgatgt ggactactcc aactttgatt cgacccattc ggtggcaatg ttccgcttat
7081 tggctgagga atttttcact ccagagaatg gttttgaccc cctgactaga gaatatcttg
7141 agtcattagc catttcaacc catgcgtttg aggagaagcg ctttctgata accggtggtc
7201 tcccatcagg ttgtgcagcg acctcaatgc taaacactat aatgaataat ataataatta
7261 gggcgggttt gtatctcacg tataaaaatt ttgaatttga tgatgtgaag gtgttgtcgt
7321 acggagatga tctccttgtg gccacaaatt accaattgga ttttgataag gtgagagcaa
7381 gcctcgcaaa gacaggatat aagataactc ccgctaacac aacttctacc tttcctctta
7441 attcgacgct tgaagacgtt gtcttcttaa aaagaaagtt taagaaagag ggccctctgt
7501 atcggcctgt catgaacaga gaggcgttgg aagcaatgtt gtcatactat cgtccaggga
7561 ctctatctga gaaactcact tcgatcacta tgcttgccgt tcattctggc aagcaggaat
7621 atgatcggct ctttgcccca ttccgtgagg taggggttgt cgtgccatca ttcgagagtg
7681 tggagtacag atggaggagt ctgttctggt agtagtgtag tcactggcac aacgcgttac
7741 ccggtaagcc aatcgggtat acacggtcgt catactgcag acagggttct tctactttgc
7801 aagatagtct agagtagtaa aataaataga tagag
//