LOCUS AH002635 2161 bp DNA linear HUM 10-JUN-2016
DEFINITION Homo sapiens thymocyte antigen (CD1C) gene, complete cds; and CD1C
pseudogene, complete sequence.
ACCESSION AH002635 J03584 M18231 M18232 M22174 M22175 M22176 M22177 M22178
VERSION AH002635.2
KEYWORDS thymocyte antigen.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2161)
AUTHORS Martin,L.H., Calabi,F., Lefebvre,F.A., Bilsland,C.A. and
Milstein,C.
TITLE Structure and expression of the human thymocyte antigens CD1a,
CD1b, and CD1c
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84 (24), 9189-9193 (1987)
PUBMED 2447586
COMMENT On or before Jun 10, 2016 this sequence version replaced M22174.1,
M18232.1, M22175.1, M22176.1, M22177.1, M22178.1, AH002635.1.
FEATURES Location/Qualifiers
source 1..2161
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
/map="1q22-q23"
gene 8..2161
/gene="CD1C"
exon 8..332
/gene="CD1C"
/note="G00-120-577"
/number=1
CDS join(272..332,879..1145,1266..1547,1668..1946,2067..2161)
/gene="CD1C"
/note="precursor"
/codon_start=1
/product="thymocyte antigen"
/protein_id="AAA51942.1"
/db_xref="GDB:G00-120-577"
/translation="MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARG
QGSGWLDELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDH
ASQDYSKYPFEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQ
SVCHLLNHQYEGVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGS
GQLLLVCHASGFYPKPVWVTWMRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPA
GLSCRVRHSSLGGQDIILYWGHHFSMNWIALVVIVPLVILIVLVLWFKKHW"
sig_peptide 272..322
/gene="CD1C"
/note="G00-120-577"
mat_peptide join(323..332,879..1145,1266..1547,1668..1946,2067..2158)
/gene="CD1C"
/product="thymocyte antigen"
/note="G00-120-577"
intron 333..>337
/gene="CD1C"
/note="G00-120-577"
/number=1
gap 338..437
/estimated_length=unknown
intron <438..>778
/gene="CD1C"
/note="G00-120-577"
/number=1
CDS 708..773
/gene="CD1C"
/pseudo
/codon_start=1
/db_xref="GDB:G00-120-577"
sig_peptide 708..763
/gene="CD1C"
/note="G00-120-577"
/pseudo
mat_peptide 764..773
/gene="CD1C"
/note="G00-120-577"
/pseudo
gap 779..878
/estimated_length=unknown
exon 879..1145
/gene="CD1C"
/note="G00-120-577"
/number=2
intron 1146..>1155
/gene="CD1C"
/note="G00-120-577"
/number=2
gap 1156..1255
/estimated_length=unknown
intron <1256..1265
/gene="CD1C"
/note="G00-120-577"
/number=2
exon 1266..1547
/gene="CD1C"
/note="G00-120-577"
/number=3
intron 1548..>1557
/gene="CD1C"
/note="G00-120-577"
/number=3
gap 1558..1657
/estimated_length=unknown
intron <1658..1667
/gene="CD1C"
/note="G00-120-577"
/number=3
exon 1668..1946
/gene="CD1C"
/note="G00-120-577"
/number=4
intron 1947..>1956
/gene="CD1C"
/note="G00-120-577"
/number=4
gap 1957..2056
/estimated_length=unknown
intron <2057..2066
/gene="CD1C"
/note="G00-120-577"
/number=4
exon 2067..>2161
/gene="CD1C"
/note="G00-120-577"
/number=5
BASE COUNT 447 a 316 c 468 g 430 t
ORIGIN
1 caggaaggga agtagatata atggagctta gtggcagagc agctggaatc ctgagagaag
61 agaataactt tagttcagag caggtgggga aatgagagat tgagtaggag gaccaaggtt
121 gagggaagca gatcttctta gttgctgtca gcggctgatg gggaagattg ttggtagaag
181 gaagtcagaa tataggtaca gagggataag tttgctaaga acagagatca gcaaacagct
241 tttctgagag aaagaaacat ctgcaaatga catgctgttt ctgcagtttc tgctgctagc
301 tcttcttctc ccaggtggtg acaatgcaga cggtaagnnn nnnnnnnnnn nnnnnnnnnn
361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
421 nnnnnnnnnn nnnnnnncag gaagggaagt agataagatg gagcttagtg ggagagcagc
481 taaaatccta agggaagaga gtaactttag ttcagagcag atggggaaat gagagattga
541 gtaggaggcc taaggttaag ggaagcagat tgtcttagtt gctgtcagtg gctgatgggg
601 aagattgtct gttggtagaa ggaagtcaga atatagatgt agagggataa gtttgctaag
661 aacagagatc agcaaatggc ttttctgaga gaaggaaaca actgcaaatg acatgctgtt
721 tctgtagttt ccgctgctag ttcttctcct ccccggtggt gacaatgcag atagtatgnn
781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnca tcccaggaac acgtctcctt
901 ccatgtcatc cagatcttct catttgtcaa ccaatcctgg gcacgaggtc agggctcagg
961 atggctggac gagttgcaga ctcatggctg ggacagtgaa tcaggcacaa taattttcct
1021 gcataactgg tccaagggca acttcagcaa tgaagagttg tcagacctag agttgttatt
1081 tcgtttctac ctctttggat taactcggga gattcaagac catgcaagtc aagattactc
1141 gaaatgtaag ttcaannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncttcc
1261 tccagatccc tttgaagtac aggtgaaagc gggctgtgag ctgcattctg gaaagagccc
1321 agaaggcttc tttcaggtag ctttcaacgg attagactta ctgagtttcc agaatacaac
1381 atgggtgcca tctccaggct gtggaagttt ggcccaaagt gtctgtcatc tactcaatca
1441 tcagtatgaa ggcgtcacag aaacagtgta taatctcata agaagcactt gcccccgatt
1501 tctcttgggt ctccttgatg cagggaagat gtatgtacac aggcaaggtc agtagttnnn
1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnctc tctgcagtga ggccagaagc
1681 ctggctgtcc agtcgcccca gccttgggtc tggccagctg ttgctggttt gtcatgcctc
1741 cggcttctac ccaaagcctg tttgggtgac atggatgcgg aatgaacagg agcaactggg
1801 cactaaacat ggtgatattc ttcctaatgc tgatgggaca tggtatcttc aggtgatcct
1861 ggaggtggca tctgaggagc ctgctggcct gtcttgtcga gtgagacaca gcagtctagg
1921 aggccaggac atcatcctct actggggtaa gactggnnnn nnnnnnnnnn nnnnnnnnnn
1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2041 nnnnnnnnnn nnnnnnatat gtgcaggaca ccacttttcc atgaattgga ttgccttggt
2101 agtgatagtg cccttggtga ttctaatagt ccttgtgtta tggtttaaga agcactggtg
2161 a
//