LOCUS AH002002 6127 bp DNA linear ROD 10-JUN-2016
DEFINITION Mus musculus domesticus strain C.AKR precursor (Lyt-3) gene,
complete cds.
ACCESSION AH002002 M22065 M22066 M22067 M22068 M22069 M22070
VERSION AH002002.2
KEYWORDS Lyt-3-a gene; Lyt3.1 protein; T-cell surface antigen; cell surface
antigen; cell surface glycoprotein; class I gene; integral membrane
protein; major histocompatibility complex.
SOURCE Mus musculus domesticus (western European house mouse)
ORGANISM Mus musculus domesticus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 6127)
AUTHORS Youn,H.J., Harriss,J.V. and Gottlieb,P.D.
TITLE Structure and expression of the Lyt-3a gene of C.AKR mice
JOURNAL Immunogenetics 28 (5), 353-361 (1988)
PUBMED 3169881
COMMENT On or before Jun 10, 2016 this sequence version replaced M22065.1,
M22066.1, M22067.1, M22068.1, M22069.1, M22070.1, AH002002.1.
FEATURES Location/Qualifiers
source 1..6127
/organism="Mus musculus domesticus"
/mol_type="genomic DNA"
/strain="C.AKR"
/sub_species="domesticus"
/db_xref="taxon:10092"
/tissue_type="liver"
/dev_stage="adult"
gene 2188..5889
/gene="Lyt-3"
CDS join(2188..2230,2766..3128,3575..3670,3901..3990,
4447..4483,5001..5013)
/gene="Lyt-3"
/note="precursor"
/codon_start=1
/protein_id="AAA39480.1"
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
sig_peptide join(2188..2230,2766..2785)
/gene="Lyt-3"
mat_peptide join(2786..3128,3575..3670,3901..3990,4447..4483,
5001..5010)
/gene="Lyt-3"
/product="unnamed"
exon <2188..2230
/gene="Lyt-3"
/number=1
intron 2231..>2528
/gene="Lyt-3"
/number=1
gap 2529..2628
/estimated_length=unknown
intron <2629..2765
/gene="Lyt-3"
/number=1
exon 2766..3128
/gene="Lyt-3"
/number=2
intron 3129..>3329
/gene="Lyt-3"
/number=2
gap 3330..3429
/estimated_length=unknown
intron <3430..3574
/gene="Lyt-3"
/number=2
exon 3575..3670
/gene="Lyt-3"
/number=3
intron 3671..>3730
/gene="Lyt-3"
/number=3
gap 3731..3830
/estimated_length=unknown
intron <3831..3900
/gene="Lyt-3"
/number=3
exon 3901..3990
/gene="Lyt-3"
/number=4
intron 3991..>4127
/gene="Lyt-3"
/number=4
gap 4128..4227
/estimated_length=unknown
intron <4228..4446
/gene="Lyt-3"
/number=4
exon 4447..4483
/gene="Lyt-3"
/number=5
intron 4484..>4778
/gene="Lyt-3"
/number=5
gap 4779..4878
/estimated_length=unknown
intron <4879..5000
/gene="Lyt-3"
/number=5
exon 5001..>5889
/gene="Lyt-3"
/number=6
regulatory 5885..5889
/regulatory_class="polyA_signal_sequence"
/gene="Lyt-3"
BASE COUNT 1441 a 1477 c 1319 g 1390 t
ORIGIN
1 aagctttcat ctttcttact ctcctctcta gccctccttc tctctctttc ttcccccctc
61 tctctacgtg gccacggcgg cttctctccc tctttctacc ttctctcttt ctccctgcct
121 ttctacaata aagctctaaa agcattaaaa aaaagtagaa taaaacagat ttgtttacga
181 ttagttatca gtaaacgatt gctttgtaca agtgttccat aggcctatac ctggggatgt
241 gggaaagttt gaggggtagg aagggatcac aagcaggaaa gggttaagaa gtcctggagg
301 ggtagcggca gggggatcaa gagttgagag tcatcctggg cctaaaaccc ctgctccaaa
361 acccacagag gctatttact aaggacatat gttgaacagt tccatctctg aggaataact
421 acattcaaca aaaagagcag ttaccaggtt ttggcacacg cggaagatgg ggagcgatca
481 taccatccat tcctcggcag acatactgtg acctctcttg gaccactttg tgatctgtgc
541 gttttacgtt gattttgaga gctactactg tgtggttttc ctaggactac ctatgctgtg
601 tacatctggc ccttagcaga ttctcctggg aacagataag aggtatggtg gagaccagcc
661 ggactacgag ggcagcgctt aggacatgac cgtttccttc tttgtctcca gaatctctgg
721 actcaaaagc ctcagctttt gcccctgtca ccaggaactg agggagtcgg atggaaagaa
781 taaggatttg gacactgagg ggcctgtgtc tcgaccccac tgccagcttt agcaccactg
841 gttaccccat tcactcttct gaaactcaag cgcacaatgt gttggctgca gggccggcct
901 agatgacact ccggcctaga tgacactcgc aatctttttt ttttttttct ttttgaggca
961 gggcttctct gtgtagccct ggctgtcctg gaactcactc tgtagatcaa gctggcctcg
1021 aactcagaaa tccactggga tggatttttg ataggatctc tctatgaagc cctgttgcct
1081 tgaactcact gtgtatacca ggctggcccc aaacttgttt tagcccactt gtctcccttc
1141 caagtctgcg gttacctgat gcacgcttag ctcttcttct gtggtggatg tcccccacag
1201 cccttcccag cctccctctc gccagcagac agatcaccaa ggatccagtt tccctggaca
1261 gcagctctct caactcacct ctgccagcct ccacaggcct ccccgttctt catgggttct
1321 tgatggggct ttgatctcaa aactgatgaa gaagcctcag ggcatacagc actgtaaggc
1381 agggcagggg aggggagaca tacagacacc ccagtccgta ggctctaggt ccaggtttgg
1441 ctttgctcac tttcaggcaa ggtctgagcc cctctgtggc accccagctt gcctctctcc
1501 ctcctttctc tctgtgttgg ctaacttccc ttcctccctt acaagggatc tccatcactc
1561 cagggccagc tggactctga actgggaggt cttcataact gttttccttg ctgagacaca
1621 cacacacaca cacacacaca cacacacaca cacacacacg taaagcctct gtctcctgcc
1681 accacgtgtt ccctaccaca atggactgtg tcctcaaacc aagatgaacc cctcctccag
1741 ctgctcagaa agaacgaatg taaagacgtg tctgaattag ggccaagctt cacaaaacca
1801 tgaggcctgg cgcatgctgg cctctgtgac tcagttgtcc caaggtatca gggttctgtc
1861 ccgagctccc ccctgggcaa gaggcatcac acaggtgcaa ccccttggca tgactgagtc
1921 tgagatctat cacttcctct caccagaaaa caagagtcct ggtgggctct ttgaaaagtc
1981 aaggctttga tgctgtatag gatgaagatg aaggcactcc atacacacac acacacacac
2041 acacacacat cacgattccg cccctgccct ggtggccccg cctcttagct cacttacgtt
2101 ctggtgcccc acccgcccaa gctggctcct aacctacctt tcagttgaca gagcactgag
2161 gggaacagtg tccccaaaag cgccaagatg cagccatggc tctggctggt cttcagtatg
2221 aagctggcag gtaagaccca gagtggggct accccaatct gcactagagc aaggaactta
2281 ggcctggtat ctcagcaaca ggaggaatag acaggcgctg ggctgtgaga acaggggagg
2341 ccggtacagg aggaccctga acccggaatg gagattcctt ctcactaccc agagaggtct
2401 gagacgccca gggcagaagt cacctctgtc ctacagcctg aactaaaagg gaaggaagga
2461 aaaaatggaa gaaagaaaag gaaagagaga gatctaaaac cgaaggggaa atgttcaggg
2521 tgcctaccnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt ctcaagtagc
2641 ccaggctggc cttgaactca ctaggcaacc aaacttgaag ttctggtcct gtacttccac
2701 ccacagagtg ctaagattgt gtgtgtatag caacagcctg gttgatgtct tctggtttct
2761 tgtagctctc tggagcagct ctgccctcat tcagacccct tcgtccctgc tggttcaaac
2821 caaccatacg gcaaagatgt cctgtgaggt taaaagcatc tctaagttaa caagcatcta
2881 ctggctgcgg gagcgccagg accccaagga caagtacttt gagttcctgg cctcctggag
2941 ttcttccaaa ggagttttgt atggtgaaag tgtggacaag aaaagaaata taattcttga
3001 gtcttcagac tcaagccggc cctttctcag tatcatgaat gtgaagccag aggacagtga
3061 cttctacttc tgcgcgacgg ttgggagccc caagatggtc tttgggacag ggacgaagct
3121 gactgtgggt aagaatgttc tcaaggctgt gaatgagcac acacacacac acatgtacac
3181 acatgtgcgc acacacatac acacacatgc ttgttcatac agatgtacac tcacatgcac
3241 acatacacat gtgattgcac acatatgcac acacacactc tcacaccggg cactggagct
3301 gcctactctc agtgagcctc actctgcagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3421 nnnnnnnnng aattcttgta ctctgtgacc tgaaattctg tggcagccaa ggcaacaatc
3481 atgagggcat caatgcctag aagaaaggca cacagtctgt ctgtaagtcc tgctgtttac
3541 ctgactaaga tataggtctc gcttctttct atagttgatg tccttcctac aactgcccca
3601 accaagaaga ctaccctgaa gatgaagaag aagaagcaat gcccgttccc ccacccagag
3661 acccagaagg gtaagttttc cattgttgca ctcacataaa aggtgctttc cactttcctt
3721 tcctccctcc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gggaggaggg
3841 gctgctcctt gctgtgtccg agtcggtgtt gcatgtgtgt gtcatgtgtg tctttttcag
3901 gcctgacatg cagccttacc accctcagcc tgctggtagt ctgcatcctg cttctgctgg
3961 cattcctcgg agtggccgtc tacttttact gtgagtcagt gcctgcggga cattgaaggg
4021 cccccacttt ctacctgaag tgtgtgtata ctaggagttc tttgttcact aaaatagcag
4081 aataaatagt aaacctaccg ccagcaaacc ttatggctta acagcagnnn nnnnnnnnnn
4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4201 nnnnnnnnnn nnnnnnnnnn nnnnnnngaa tcatggaatg gatgactgag taatttttaa
4261 acacttcaaa cctatataag caagcaacaa aagtgagaag tgtgaggaat ctggggacca
4321 ccctagcacc ccagaagaag ccttgggcgt tggctaacca tgctgccttc ctctcgggct
4381 ctgaggtttt gatgccagtg atccaccaac cagcgctgac ttgtttgtct ctctctgctc
4441 ttccaggtgt gcggaggaga gcccgaattc acttcatgaa acagtaagtg ctgttctcca
4501 aaaagtcacg aactcggggg cctgagagtt tggatgactt gacagagggt ttgcctagcg
4561 atcccctgca tcacataaac caagatcatg gcttactcca agcacgcctt taaacccaaa
4621 agttgggagg aagaagcagg cgatttctgt gagtttaagg ctagcctggt ctacatagtg
4681 agccttagga cagccagggc tacagagaga gagagagaga ccctgactaa agaaaaagga
4741 agttcccagt catcctcagt tacactgaaa gtccaaggnn nnnnnnnnnn nnnnnnnnnn
4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4861 nnnnnnnnnn nnnnnnnnga gctctcagcc ccaggatgcc cacctcttcc tccatctgtc
4921 attgcttttg ctataagaaa tatagcaaaa gtgtcactgg cctgaaaata agagtcttac
4981 aatatgctgt tgtttcccag gtttcacaaa tgatcagcgc ccacaacact gatagcctgc
5041 tagaataaaa ggactgtaac tcaatcaaag caagatctgg actagtgaga gacagcgcat
5101 tcaggactgg agaggccctt gcccttgctc aagctgcctg ctttgaactg ctgcaagctc
5161 tgtgtgtggt ttggggtctc acaaggaagg cctcagaacc caagctcacg cacagagtgg
5221 ctgaagaacc aagaactccc acgccaccat gtactcttct tggactgggc cttggacagt
5281 gccttccagc cactgtcttt gtcagttgct tggtaggaca gccttattga ctctttggcc
5341 tttcatggaa aagagctagc cgggcagccc tggagaagac tgcaaatcct cacacagaga
5401 agccacctca tgaataaggt ttcctgcaaa cagtttctgg gctctcagca gccatcttac
5461 tttctcaggc cttgccgtgg gtttgggagc gcgttggctc aggagacaga cttctacttc
5521 atctcctagt aggaagtttc ttaagcttca cttcttctct ctcgtggctt atatatttct
5581 tctctcactc tctgcccttt taatgaaaat gttttggcta taaaaataaa gtcctgccgg
5641 gcatggtggt gcatgccttt aatcccagca ctcaggaggc agaggcaggc ggatctctga
5701 gttcgaggcc agcctggtct acagagtgag ttccaggaca gccaaggcta cagagaaacc
5761 ctgtctcaaa aaaacacaaa aacaaaaaca aaaaaacaaa aaacaaaaaa caaaatatag
5821 tcctatgtta aagacctcag acaagctagg agtgacaagg gctgggaatg taggactcca
5881 gtctaataat gcacaaggtc ctgggttcag tcaccacatg ggtggggtgg gagaaaggag
5941 ggtgagttca ttttgtgtgt tctcatctta catctaaaac tctcatttgg ccagattcat
6001 tgtgcccaaa cttgaattgt ggatgaagag attaggaaat acctacagtg atactagaag
6061 ccctttcaat agaaaagaac aggtgtttgt ttcagccgtt ggagggcctt gaagtctgtc
6121 tttaggg
//