LOCUS AH001876 5846 bp DNA linear ROD 10-JUN-2016 DEFINITION Mus musculus T-cell differentiation antigen (CD4) gene, complete cds, alternatively spliced. ACCESSION AH001876 J03003 M17075 M17076 M17077 M17078 M17079 M17080 VERSION AH001876.2 KEYWORDS T-cell differentiation antigen; cell surface glycoprotein. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5846) AUTHORS Gorman,S.D., Tourvieille,B. and Parnes,J.R. TITLE Structure of the mouse gene encoding CD4 and an unusual transcript in brain JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84 (21), 7644-7648 (1987) PUBMED 2823269 COMMENT On or before Jun 10, 2016 this sequence version replaced M17075.1, M17076.1, M17077.1, M17078.1, M17079.1, M17080.1, AH001876.1. FEATURES Location/Qualifiers source 1..5846 /organism="Mus musculus" /mol_type="genomic DNA" /db_xref="taxon:10090" gene 445..4836 /gene="CD4" exon 445..547 /gene="CD4" /number=1 intron 548..>839 /gene="CD4" /number=1 gap 840..939 /estimated_length=unknown CDS join(1107..1158,1287..1454,1783..1944,2232..2468, 2678..3013,3275..3475,3954..4072,4411..4478,4806..4836) /gene="CD4" /note="precursor" /codon_start=1 /product="T-cell differentiation antigen" /protein_id="AAA37402.1" /translation="MCRAISLRRLLLLLLQLSQLLAVTQEKTLVLGKEGESAELPCES SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM QKSHNLI" sig_peptide join(1107..1158,1287..1312) /gene="CD4" /note="T-cell differentiation antigen signal peptide" mat_peptide join(1313..1454,1783..1944,2232..2468,2678..3013, 3275..3475,3954..4072,4411..4478,4806..4833) /gene="CD4" /product="T-cell differentiation antigen" exon <1107..1158 /gene="CD4" /note="T-cell differentiation antigen precursor, (first expressed exon)" /number=2 intron 1159..1286 /gene="CD4" /number=2 exon 1287..1454 /gene="CD4" /number=3 intron 1455..>1498 /gene="CD4" /number=3 gap 1499..1598 /estimated_length=unknown intron <1599..1782 /gene="CD4" /number=3 exon 1783..1944 /gene="CD4" /number=4 misc_feature 1931..1932 /gene="CD4" /note="V-like region end/J-like region start" intron 1945..2231 /gene="CD4" /number=4 exon 2232..2468 /gene="CD4" /number=5 misc_feature 2245..2246 /gene="CD4" /note="J-like region end/V'-like region start" misc_feature 2440..2441 /gene="CD4" /note="V'-like region end/J'-like region start" intron 2469..>2503 /gene="CD4" /number=5 gap 2504..2603 /estimated_length=unknown intron <2604..2677 /gene="CD4" /number=5 exon 2678..3013 /gene="CD4" /number=6 misc_feature 2679..2680 /gene="CD4" /note="J'-like region end/CP-like region start" exon 2736..3013 /gene="CD4" /note="T-cell differentiation antigen (brain), (putative); putative" /number=1 CDS join(2779..3013,3275..3475,3954..4072,4411..4478, 4806..4836) /gene="CD4" /note="brain allele" /codon_start=1 /product="T-cell differentiation antigen" /protein_id="AAA37403.1" /translation="MWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQLKETLPLTL KIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPTSPKMRLTL KQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVNQTVFLACV LGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRMQKSHNLI" intron 3014..>3141 /gene="CD4" /number=6 gap 3142..3241 /estimated_length=unknown intron <3242..3274 /gene="CD4" /number=6 exon 3275..3475 /gene="CD4" /note="exon 2 in brain allele" /number=7 intron 3476..>3710 /gene="CD4" /number=7 gap 3711..3810 /estimated_length=unknown intron <3811..3953 /gene="CD4" /number=7 exon 3954..4072 /gene="CD4" /note="brain allele exon 3" /number=8 intron 4073..4410 /gene="CD4" /number=8 exon 4411..4478 /gene="CD4" /note="brain allele exon 4" /number=9 intron 4479..4805 /gene="CD4" /number=9 exon 4806..>4836 /gene="CD4" /note="brain allele exon 5" /number=10 BASE COUNT 1295 a 1383 c 1425 g 1243 t ORIGIN Chromosome 6. 1 tctagaacag ccgacttagt ggatctgttg ggcaacgtaa tctaaatttt ccattgatta 61 aattgctaac tttttttttt aaaacatggc attactgcat aggcagccta gtctggcctt 121 gagcttgtga tttttctgcc taaatcaccc agtgctgggg ttacagttac atgcccgtgc 181 ccgtgcccgt gcctgtaagc cttgcctcac gttgacctaa ccaggctgtt tcagcttttt 241 acggcaccaa acaatagtga cattccagac tccagcttga ttctgctcag gcattttcag 301 tgactttggc atttttaatt tttcaacttc cccaacaact gggggtggga gggagggact 361 cctgagggct ggcttacgtc cgccgtgcag aggagcctca cgaccaggct tcctgtcttt 421 tcatttacga acatctgtga aggcaaagca agactctctt cttcactagg tacctgtttg 481 caaagtctcg agccctcata tacacacacc tgtgcaagaa gcagagtgaa ggaaggactg 541 gccagaggta agagggacgt gttcaacttt gttctttcaa ggagctggaa ggggcagcta 601 atgtgccgga atgttctgga tgcagttctc tgttctcagt tgtggcctgg ggttctcctg 661 tattcctctt agaacgggtc atgaacagtg atctcccact ggaatcatga gcttcgaaag 721 gctcagcagt aagcccttct catctttgcc tgccatggcc ccaagtatag tttagtgctc 781 agagcagtag tgcccccttg aaccacccca ggaagaatgc aaagtcagag gggtagaaan 841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt gcagataatg ttctctgggt 961 tggttatcaa ggtcctgagg aagagaaaga gttcttgtgt ccccaggccc aaggaatacc 1021 tgaagactga tgatttctat cttcctccgc ccctgacatt tttgtaggct cagattccca 1081 accaacaaga gctcaaggag accaccatgt gccgagccat ctctcttagg cgcttgctgc 1141 tgctgctgct gcagctgtgt aagttttctg acttggggac cagtggcaga tggggcaagg 1201 aggaggggca aaggggaaac cggaaaagga tgggagatag ggagacagct gttaacatct 1261 gaaacatgac cttcttttct gtgcagcaca actcctagct gtcactcaag agaagacgct 1321 ggtgctgggg aaggaagggg aatcagcaga actgccctgc gagagttccc agaagaagat 1381 cacagtcttc acctggaagt tctctgacca gaggaagatt ctggggcagc atggcaaagg 1441 tgtattaatt agaggtagga ttccctgtcc ccccaccccc caccccccaa cccagggann 1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt tttgagctag tgggatactg 1621 ttcccaccat gtaaatagac attggtgggc cttctcatca gttcagagtc cttcatgagg 1681 gtgaattaaa gactgccaac tcagaccagc agagttgtgg gcactctttt cagcagaggt 1741 gccagggcac ctcaacttct tttgtatggc ttcgatttgc aggaggttcg ccttcgcagt 1801 ttgatcgttt tgattccaaa aaaggggcat gggagaaagg atcgtttcct ctcatcatca 1861 ataaacttaa gatggaagac tctcagactt atatctgtga gctggagaac aggaaagagg 1921 aggtggagtt gtgggtgttc aaaggtgagt cgggcagtct tggggtatag acatctcctc 1981 ctcttccctt ccatgctcac accaaaacca ggtcctgaac tgatgatatt tcagacacaa 2041 gtgggtcaga gtgttcctct tggttaatgg gggatgcggt gggaggggac ccctacctta 2101 tgctgggcat ggccagctgg gagttgggag gggaggcact gttgaaagac aatgatggag 2161 agacactgtt gttctttctc cctccatcct tggggatggt gtgtgatgca ggtactctgc 2221 ttcctctaca gtgaccttca gtccgggtac cagcctgttg caagggcaga gcctgaccct 2281 gaccttggat agcaactcta aggtctctaa ccccttgaca gagtgcaaac acaaaaaggg 2341 taaagttgtc agtggttcca aagttctctc catgtccaac ctaagggttc aggacagcga 2401 cttctggaac tgcaccgtga ccctggacca gaaaaagaac tggttcggca tgacactctc 2461 agtgctgggt aagaggctac acacccttca gcttccttcc tgcnnnnnnn nnnnnnnnnn 2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2581 nnnnnnnnnn nnnnnnnnnn nnntgccccg acacacgctc cctcatcttt ctcttcacct 2641 gtacccagag ttatttcttc ttatctcaca cctccaggtt ttcagagcac agctatcacg 2701 gcctataaga gtgagggaga gtcagcggag ttctccttcc cactcaactt tgcagaggaa 2761 aacgggtggg gagagctgat gtggaaggca gagaaggatt ctttcttcca gccctggatc 2821 tccttctcca taaagaacaa agaggtgtcc gtacaaaagt ccaccaaaga cctcaagctc 2881 cagctgaagg aaacgctccc actcaccctc aagatacccc aggtctcgct tcagtttgct 2941 ggttctggca acctgactct gactctggac aaagggacac tgcatcagga agtgaacctg 3001 gtggtgatga aaggtaaagg ggtgggctgg gctgagaagg gcaagtgggg aggcaggggt 3061 taaaggtgaa aggggtggtc taggcctctc catggctggt caggtcccaa aaaggggatg 3121 ctttgaccct ggttgtctgg cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3241 nggatccagc tctctgcctc tccttcctct gcagtggctc agctcaacaa tactttgacc 3301 tgtgaggtga tgggacctac ctctcccaag atgagactga ccctgaagca ggagaaccag 3361 gaggccaggg tctctgagga gcagaaagta gttcaagtgg tggcccctga gacagggctg 3421 tggcagtgtc tactgagtga aggtgataag gtcaagatgg actccaggat ccagggtaag 3481 gatccagttt ctaaggcctc accctaagcc tcggactctt cacctgtgga aagccccagg 3541 gacaagctat gccgacctag agtctcagtt ccctagctcc tcacggaggc attttgtaca 3601 gaggttggag atagaagtga ggagagagag gggtcctggg ctctaggttc ccacttgtat 3661 cctccagtta cttcccactt ccacacagct taggagtgag gtcttcctgg nnnnnnnnnn 3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn actcagcctt gttctctgac ctggggccaa 3841 agttaagact gtccctagat agaggcactg agtatctttc tctttcttca caatatctgg 3901 gctggaccca aggcttccgg ccaccagagc tatctcccct tcccttctcc cagttttatc 3961 cagaggggtg aaccagacag tgttcctggc ttgcgtgctg ggtggctcct tcggctttct 4021 gggtttcctt gggctctgca tcctctgctg tgtcaggtgc cggcaccaac aggtgagtga 4081 acaccccata attgcccact ggatcctcaa agcacctcac aattgcccac tggaccctca 4141 agcactgtat cctcagccga gtaccttgca accggcttct ggtttagctt tctctgccta 4201 gcccctgaag tccctcactg tagaccagac cctgcctctg agcccatctg aagggagaca 4261 caaggaggaa cagatgtcac tgacaggacg ggggcttaag ccaacaagta aatgcttctc 4321 ctctgccagc ttccccccct cccccctcca agggcacctc cctcctggag gactgggacc 4381 ctcacgacta ctctccttgt ccctgggcag cgccaggcag cacgaatgtc tcagatcaag 4441 aggctcctca gtgagaagaa gacctgccag tgcccccagt aaggatctgg gctgaggggt 4501 aggcgggggg gggggggggg agagaagggg agacagggaa gaaaagggta agggagacaa 4561 gacaagacaa gttaagaagg atgagtgggg tggagtaagg agaggggtag aagggaagaa 4621 tggagagagt gaggaaggga acttaggaaa gggttggcag agggaggtga aggggcagtg 4681 ggcctctggg tctgcacaga cacagcagcg gtgccctgag gtaccaatgt gcagcaggag 4741 agaagtgggt agcacatgga ggggccggga gacgggatat gctcccctgt ccttctctct 4801 tccagccgga tgcagaagag ccataatctc atctgaggcc taggccccac ctgcagccca 4861 ccacctgcgt cctgtctcat cgcccgaggc ctggggacca gatgaatgta gcagacacgc 4921 tgcctccggc cttctgctct cctcttccac aaccggccac ggtttccctc cctctgttcc 4981 caagcctgtc tgtctgcaga gcttgccctc tgcgtttcag acactcaagc acaccccatc 5041 agcttattta ttcttcgctg ctgcctttct gccagagcct cggcccttct cggactaagg 5101 tcctggaacc tttttccagc tgtctgcttg gatcaaaggg cagtgtatag cacctggcac 5161 ggatggtggg actggtgtct ggaaatacac agcacagttt acgagagggc tctgggacca 5221 agctgagtgg ggcagggagg gccgggaggt tgtgcatgtc acacatgaag catgtcaggg 5281 gcaaatgaag actgagaggc tgcgggagtc agcctcagct tcccatgatg cctgcttctc 5341 ttttgaattt gcaagaccag actcacattc taaccagtgc accaacacac atccaagcca 5401 cacacctgtc catatatcca aacagcatat cttaattcat aagccacttt aatgtcccag 5461 gcattcgacc cttacaaaaa ccttacaagt ggatgagcgg taaaaagcct catgaactga 5521 gtggaaggag aggattaact cttgaaagtt gtcccctatg tatgtaccat gaccctcatg 5581 tgtacacaac acacacacac acacacacac atacacacac gaacacacgc atgttgcaca 5641 catgcatgca cgctgaaatc ctacaagctg acagtgatga ctaagatggc agagataacc 5701 agtcatccct agtgaaatgg aacttggttg aatgactacc caaggttacc cagctaacaa 5761 gtgctgatgt cagggccaac ccagggctcc tgatccctag agccaagcca ctacatggaa 5821 cacagggatg aataccacac agatct //