LOCUS       AH001876                5846 bp    DNA     linear   ROD 10-JUN-2016
DEFINITION  Mus musculus T-cell differentiation antigen (CD4) gene, complete
            cds, alternatively spliced.
ACCESSION   AH001876 J03003 M17075 M17076 M17077 M17078 M17079 M17080
VERSION     AH001876.2
KEYWORDS    T-cell differentiation antigen; cell surface glycoprotein.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5846)
  AUTHORS   Gorman,S.D., Tourvieille,B. and Parnes,J.R.
  TITLE     Structure of the mouse gene encoding CD4 and an unusual transcript
            in brain
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 84 (21), 7644-7648 (1987)
   PUBMED   2823269
COMMENT     On or before Jun 10, 2016 this sequence version replaced M17075.1,
            M17076.1, M17077.1, M17078.1, M17079.1, M17080.1, AH001876.1.
FEATURES             Location/Qualifiers
     source          1..5846
                     /organism="Mus musculus"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:10090"
     gene            445..4836
                     /gene="CD4"
     exon            445..547
                     /gene="CD4"
                     /number=1
     intron          548..>839
                     /gene="CD4"
                     /number=1
     gap             840..939
                     /estimated_length=unknown
     CDS             join(1107..1158,1287..1454,1783..1944,2232..2468,
                     2678..3013,3275..3475,3954..4072,4411..4478,4806..4836)
                     /gene="CD4"
                     /note="precursor"
                     /codon_start=1
                     /product="T-cell differentiation antigen"
                     /protein_id="AAA37402.1"
                     /translation="MCRAISLRRLLLLLLQLSQLLAVTQEKTLVLGKEGESAELPCES
                     SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL
                     KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK
                     HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS
                     EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL
                     KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT
                     SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN
                     QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM
                     QKSHNLI"
     sig_peptide     join(1107..1158,1287..1312)
                     /gene="CD4"
                     /note="T-cell differentiation antigen signal peptide"
     mat_peptide     join(1313..1454,1783..1944,2232..2468,2678..3013,
                     3275..3475,3954..4072,4411..4478,4806..4833)
                     /gene="CD4"
                     /product="T-cell differentiation antigen"
     exon            <1107..1158
                     /gene="CD4"
                     /note="T-cell differentiation antigen precursor, (first
                     expressed exon)"
                     /number=2
     intron          1159..1286
                     /gene="CD4"
                     /number=2
     exon            1287..1454
                     /gene="CD4"
                     /number=3
     intron          1455..>1498
                     /gene="CD4"
                     /number=3
     gap             1499..1598
                     /estimated_length=unknown
     intron          <1599..1782
                     /gene="CD4"
                     /number=3
     exon            1783..1944
                     /gene="CD4"
                     /number=4
     misc_feature    1931..1932
                     /gene="CD4"
                     /note="V-like region end/J-like region start"
     intron          1945..2231
                     /gene="CD4"
                     /number=4
     exon            2232..2468
                     /gene="CD4"
                     /number=5
     misc_feature    2245..2246
                     /gene="CD4"
                     /note="J-like region end/V'-like region start"
     misc_feature    2440..2441
                     /gene="CD4"
                     /note="V'-like region end/J'-like region start"
     intron          2469..>2503
                     /gene="CD4"
                     /number=5
     gap             2504..2603
                     /estimated_length=unknown
     intron          <2604..2677
                     /gene="CD4"
                     /number=5
     exon            2678..3013
                     /gene="CD4"
                     /number=6
     misc_feature    2679..2680
                     /gene="CD4"
                     /note="J'-like region end/CP-like region start"
     exon            2736..3013
                     /gene="CD4"
                     /note="T-cell differentiation antigen (brain), (putative);
                     putative"
                     /number=1
     CDS             join(2779..3013,3275..3475,3954..4072,4411..4478,
                     4806..4836)
                     /gene="CD4"
                     /note="brain allele"
                     /codon_start=1
                     /product="T-cell differentiation antigen"
                     /protein_id="AAA37403.1"
                     /translation="MWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQLKETLPLTL
                     KIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPTSPKMRLTL
                     KQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVNQTVFLACV
                     LGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRMQKSHNLI"
     intron          3014..>3141
                     /gene="CD4"
                     /number=6
     gap             3142..3241
                     /estimated_length=unknown
     intron          <3242..3274
                     /gene="CD4"
                     /number=6
     exon            3275..3475
                     /gene="CD4"
                     /note="exon 2 in brain allele"
                     /number=7
     intron          3476..>3710
                     /gene="CD4"
                     /number=7
     gap             3711..3810
                     /estimated_length=unknown
     intron          <3811..3953
                     /gene="CD4"
                     /number=7
     exon            3954..4072
                     /gene="CD4"
                     /note="brain allele exon 3"
                     /number=8
     intron          4073..4410
                     /gene="CD4"
                     /number=8
     exon            4411..4478
                     /gene="CD4"
                     /note="brain allele exon 4"
                     /number=9
     intron          4479..4805
                     /gene="CD4"
                     /number=9
     exon            4806..>4836
                     /gene="CD4"
                     /note="brain allele exon 5"
                     /number=10
BASE COUNT         1295 a         1383 c         1425 g         1243 t
ORIGIN      Chromosome 6.
        1 tctagaacag ccgacttagt ggatctgttg ggcaacgtaa tctaaatttt ccattgatta
       61 aattgctaac tttttttttt aaaacatggc attactgcat aggcagccta gtctggcctt
      121 gagcttgtga tttttctgcc taaatcaccc agtgctgggg ttacagttac atgcccgtgc
      181 ccgtgcccgt gcctgtaagc cttgcctcac gttgacctaa ccaggctgtt tcagcttttt
      241 acggcaccaa acaatagtga cattccagac tccagcttga ttctgctcag gcattttcag
      301 tgactttggc atttttaatt tttcaacttc cccaacaact gggggtggga gggagggact
      361 cctgagggct ggcttacgtc cgccgtgcag aggagcctca cgaccaggct tcctgtcttt
      421 tcatttacga acatctgtga aggcaaagca agactctctt cttcactagg tacctgtttg
      481 caaagtctcg agccctcata tacacacacc tgtgcaagaa gcagagtgaa ggaaggactg
      541 gccagaggta agagggacgt gttcaacttt gttctttcaa ggagctggaa ggggcagcta
      601 atgtgccgga atgttctgga tgcagttctc tgttctcagt tgtggcctgg ggttctcctg
      661 tattcctctt agaacgggtc atgaacagtg atctcccact ggaatcatga gcttcgaaag
      721 gctcagcagt aagcccttct catctttgcc tgccatggcc ccaagtatag tttagtgctc
      781 agagcagtag tgcccccttg aaccacccca ggaagaatgc aaagtcagag gggtagaaan
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt gcagataatg ttctctgggt
      961 tggttatcaa ggtcctgagg aagagaaaga gttcttgtgt ccccaggccc aaggaatacc
     1021 tgaagactga tgatttctat cttcctccgc ccctgacatt tttgtaggct cagattccca
     1081 accaacaaga gctcaaggag accaccatgt gccgagccat ctctcttagg cgcttgctgc
     1141 tgctgctgct gcagctgtgt aagttttctg acttggggac cagtggcaga tggggcaagg
     1201 aggaggggca aaggggaaac cggaaaagga tgggagatag ggagacagct gttaacatct
     1261 gaaacatgac cttcttttct gtgcagcaca actcctagct gtcactcaag agaagacgct
     1321 ggtgctgggg aaggaagggg aatcagcaga actgccctgc gagagttccc agaagaagat
     1381 cacagtcttc acctggaagt tctctgacca gaggaagatt ctggggcagc atggcaaagg
     1441 tgtattaatt agaggtagga ttccctgtcc ccccaccccc caccccccaa cccagggann
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt tttgagctag tgggatactg
     1621 ttcccaccat gtaaatagac attggtgggc cttctcatca gttcagagtc cttcatgagg
     1681 gtgaattaaa gactgccaac tcagaccagc agagttgtgg gcactctttt cagcagaggt
     1741 gccagggcac ctcaacttct tttgtatggc ttcgatttgc aggaggttcg ccttcgcagt
     1801 ttgatcgttt tgattccaaa aaaggggcat gggagaaagg atcgtttcct ctcatcatca
     1861 ataaacttaa gatggaagac tctcagactt atatctgtga gctggagaac aggaaagagg
     1921 aggtggagtt gtgggtgttc aaaggtgagt cgggcagtct tggggtatag acatctcctc
     1981 ctcttccctt ccatgctcac accaaaacca ggtcctgaac tgatgatatt tcagacacaa
     2041 gtgggtcaga gtgttcctct tggttaatgg gggatgcggt gggaggggac ccctacctta
     2101 tgctgggcat ggccagctgg gagttgggag gggaggcact gttgaaagac aatgatggag
     2161 agacactgtt gttctttctc cctccatcct tggggatggt gtgtgatgca ggtactctgc
     2221 ttcctctaca gtgaccttca gtccgggtac cagcctgttg caagggcaga gcctgaccct
     2281 gaccttggat agcaactcta aggtctctaa ccccttgaca gagtgcaaac acaaaaaggg
     2341 taaagttgtc agtggttcca aagttctctc catgtccaac ctaagggttc aggacagcga
     2401 cttctggaac tgcaccgtga ccctggacca gaaaaagaac tggttcggca tgacactctc
     2461 agtgctgggt aagaggctac acacccttca gcttccttcc tgcnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnntgccccg acacacgctc cctcatcttt ctcttcacct
     2641 gtacccagag ttatttcttc ttatctcaca cctccaggtt ttcagagcac agctatcacg
     2701 gcctataaga gtgagggaga gtcagcggag ttctccttcc cactcaactt tgcagaggaa
     2761 aacgggtggg gagagctgat gtggaaggca gagaaggatt ctttcttcca gccctggatc
     2821 tccttctcca taaagaacaa agaggtgtcc gtacaaaagt ccaccaaaga cctcaagctc
     2881 cagctgaagg aaacgctccc actcaccctc aagatacccc aggtctcgct tcagtttgct
     2941 ggttctggca acctgactct gactctggac aaagggacac tgcatcagga agtgaacctg
     3001 gtggtgatga aaggtaaagg ggtgggctgg gctgagaagg gcaagtgggg aggcaggggt
     3061 taaaggtgaa aggggtggtc taggcctctc catggctggt caggtcccaa aaaggggatg
     3121 ctttgaccct ggttgtctgg cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nggatccagc tctctgcctc tccttcctct gcagtggctc agctcaacaa tactttgacc
     3301 tgtgaggtga tgggacctac ctctcccaag atgagactga ccctgaagca ggagaaccag
     3361 gaggccaggg tctctgagga gcagaaagta gttcaagtgg tggcccctga gacagggctg
     3421 tggcagtgtc tactgagtga aggtgataag gtcaagatgg actccaggat ccagggtaag
     3481 gatccagttt ctaaggcctc accctaagcc tcggactctt cacctgtgga aagccccagg
     3541 gacaagctat gccgacctag agtctcagtt ccctagctcc tcacggaggc attttgtaca
     3601 gaggttggag atagaagtga ggagagagag gggtcctggg ctctaggttc ccacttgtat
     3661 cctccagtta cttcccactt ccacacagct taggagtgag gtcttcctgg nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn actcagcctt gttctctgac ctggggccaa
     3841 agttaagact gtccctagat agaggcactg agtatctttc tctttcttca caatatctgg
     3901 gctggaccca aggcttccgg ccaccagagc tatctcccct tcccttctcc cagttttatc
     3961 cagaggggtg aaccagacag tgttcctggc ttgcgtgctg ggtggctcct tcggctttct
     4021 gggtttcctt gggctctgca tcctctgctg tgtcaggtgc cggcaccaac aggtgagtga
     4081 acaccccata attgcccact ggatcctcaa agcacctcac aattgcccac tggaccctca
     4141 agcactgtat cctcagccga gtaccttgca accggcttct ggtttagctt tctctgccta
     4201 gcccctgaag tccctcactg tagaccagac cctgcctctg agcccatctg aagggagaca
     4261 caaggaggaa cagatgtcac tgacaggacg ggggcttaag ccaacaagta aatgcttctc
     4321 ctctgccagc ttccccccct cccccctcca agggcacctc cctcctggag gactgggacc
     4381 ctcacgacta ctctccttgt ccctgggcag cgccaggcag cacgaatgtc tcagatcaag
     4441 aggctcctca gtgagaagaa gacctgccag tgcccccagt aaggatctgg gctgaggggt
     4501 aggcgggggg gggggggggg agagaagggg agacagggaa gaaaagggta agggagacaa
     4561 gacaagacaa gttaagaagg atgagtgggg tggagtaagg agaggggtag aagggaagaa
     4621 tggagagagt gaggaaggga acttaggaaa gggttggcag agggaggtga aggggcagtg
     4681 ggcctctggg tctgcacaga cacagcagcg gtgccctgag gtaccaatgt gcagcaggag
     4741 agaagtgggt agcacatgga ggggccggga gacgggatat gctcccctgt ccttctctct
     4801 tccagccgga tgcagaagag ccataatctc atctgaggcc taggccccac ctgcagccca
     4861 ccacctgcgt cctgtctcat cgcccgaggc ctggggacca gatgaatgta gcagacacgc
     4921 tgcctccggc cttctgctct cctcttccac aaccggccac ggtttccctc cctctgttcc
     4981 caagcctgtc tgtctgcaga gcttgccctc tgcgtttcag acactcaagc acaccccatc
     5041 agcttattta ttcttcgctg ctgcctttct gccagagcct cggcccttct cggactaagg
     5101 tcctggaacc tttttccagc tgtctgcttg gatcaaaggg cagtgtatag cacctggcac
     5161 ggatggtggg actggtgtct ggaaatacac agcacagttt acgagagggc tctgggacca
     5221 agctgagtgg ggcagggagg gccgggaggt tgtgcatgtc acacatgaag catgtcaggg
     5281 gcaaatgaag actgagaggc tgcgggagtc agcctcagct tcccatgatg cctgcttctc
     5341 ttttgaattt gcaagaccag actcacattc taaccagtgc accaacacac atccaagcca
     5401 cacacctgtc catatatcca aacagcatat cttaattcat aagccacttt aatgtcccag
     5461 gcattcgacc cttacaaaaa ccttacaagt ggatgagcgg taaaaagcct catgaactga
     5521 gtggaaggag aggattaact cttgaaagtt gtcccctatg tatgtaccat gaccctcatg
     5581 tgtacacaac acacacacac acacacacac atacacacac gaacacacgc atgttgcaca
     5641 catgcatgca cgctgaaatc ctacaagctg acagtgatga ctaagatggc agagataacc
     5701 agtcatccct agtgaaatgg aacttggttg aatgactacc caaggttacc cagctaacaa
     5761 gtgctgatgt cagggccaac ccagggctcc tgatccctag agccaagcca ctacatggaa
     5821 cacagggatg aataccacac agatct
//