LOCUS KM655721 3030 bp mRNA linear HTC 29-JUL-2015
DEFINITION Danio rerio Scube2 mRNA, partial cds.
ACCESSION KM655721
VERSION KM655721.1
KEYWORDS HTC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 3030)
AUTHORS Gao,X., Metzger,U., Panza,P., Mahalwar,P., Alsheimer,S., Geiger,H.,
Maischein,H.M., Levesque,M.P., Templin,M. and Sollner,C.
TITLE A Floor-Plate Extracellular Protein-Protein Interaction Screen
Identifies Draxin as a Secreted Netrin-1 Antagonist
JOURNAL Cell Rep 12 (4), 694-708 (2015)
PUBMED 26190107
REFERENCE 2 (bases 1 to 3030)
AUTHORS Gao,X., Metzger,U., Panza,P., Mahalwar,P., Alsheimer,S., Geiger,H.,
Maischein,H.M., Levesque,M.P., Templin,M. and Sollner,C.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2014) Genetics, Max Planck Institute for
Developmental Biology, Spemannstrasse 35, Tuebingen, BW 72076,
Germany
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3030
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
CDS 1..>3030
/codon_start=1
/product="Scube2"
/protein_id="AJG06067.1"
/translation="MGAVWTVRLLCLFLLLLNTRQSAALPHNTDQCAEGSDACHIDAI
CQNTPTSYKCTCKTGFKGDGKHCEDIDECDVEYNGGCVHECNNIPGNYRCTCLDGFHL
AHDGHNCLDVDECVFNNGGCQHVCVNTMGSYECRCKQGFFLSDNQHTCIHRSVEGLSC
MNKEHDCGHICKESPKGGVACECRPGFELAKNQRGCILTCNHGNGGCQHICEDTEQGP
ICRCHVRYMLHADGRTCVERDEMAPTAPDHNATSLAEVDKRVKRRLLMETCAVNNGGC
DSTCKDTSTGVRCSCPVGFTLQPDGKSCKDIDECELHNGGCDHYCRNTIGSFECSCRK
GFKLLTDERSCQDIDECFFERTCDHTCVNSPGSFQCVCNKGYTLYGLAHCGDINECSF
NNGGCEHTCENTMGSFGCHCRAGYKLHWNKKDCIEAEDSPLVPPPARPTLNCNKQGGG
ELCYLTCQSQVHISSGAEDSYTVTCGMPLPCHTGGQWNGSYCPGSGIKTIATFKSGQG
KCNLKRSHENLAHSFKTALSDKRATENVQFSFVSLHCASSSRQQRSRHGRKAGEEEGS
FITAQFELDVNLEEVTAEGCDLTCVRRRSEKRLRKTIRTLRKSINREQFHLHFAGSEY
ELAKKLVRPADTPDHCGTGQILLDKKCVKCSVGTYYDGEQGRCFLCPPGTYQDEEGQV
SCDVCPGPEGRGIPETAEARNISECAGQCRPGQFSHDGFVPCLPCPQGTYQPEVGRTS
CFTCGGSLTTKYDGSVSFQNCETKVQCSPGHYYNTSTHRCIRCPVGTYQMEFGQNYCI
ACPGNTTTDFDRSTNIMQCKNRHCGGELGEFTGYIESPNYPGNYPANIECTWTITPPP
KRRILVVVPEIYLPIEDECGDYLVMRKSSLPNSVTTYETCQTYERPIAFTSRSKKLWI
QFRSNEGNSGKGFQVPYATYDEDYQELIEDIVRDGRLYASENHQEILKDKKLMRALFD
VLAHPQNFFNYTAQESREMFPKSFIRFLRSKVLRFLRP"
BASE COUNT 789 a 765 c 805 g 671 t
ORIGIN
1 atgggagctg tttggactgt acggctcctc tgtttgtttt tgctcttgtt aaacactcgc
61 caaagcgccg cacttcctca caacactgat caatgtgcag agggaagtga tgcctgtcac
121 attgatgcta tttgtcaaaa taccccaact tcatacaagt gcacttgcaa aacaggcttt
181 aaaggggacg gaaaacactg tgaagacatt gatgaatgtg atgtggaata caatggtggc
241 tgtgtacacg aatgtaacaa catacctggc aattaccgct gtacttgcct tgatgggttt
301 catttggcac atgatgggca caactgtctc gatgtggacg aatgtgtctt caacaatggc
361 ggctgtcagc atgtatgtgt caacaccatg ggaagctatg agtgtcgctg caagcaaggc
421 tttttcctga gtgacaatca gcacacatgc atccatcgct ccgtggaagg cctgagctgc
481 atgaataaag agcatgactg tggtcatatc tgtaaggaga gtccaaaagg tggcgtggcc
541 tgtgagtgcc ggccgggctt cgaactggcc aagaaccagc ggggctgcat cttgacctgc
601 aaccatggta atgggggctg ccagcatatc tgtgaggata cagagcaggg gccaatctgc
661 agatgccacg tcaggtacat gctgcacgca gatggcagaa cctgtgtaga aagggatgaa
721 atggccccca cagccccaga tcacaatgcc acgtctttag cagaggtaga caaacgagtc
781 aagcggcgac tgcttatgga gacgtgtgcg gtgaataacg gaggctgtga cagcacttgt
841 aaggacacat ccactggtgt tcgctgcagc tgcccggtgg gatttactct gcagcctgat
901 ggcaaatcct gcaaagacat agatgagtgt gagctccaca atggcggctg tgaccactac
961 tgcaggaaca ccattggcag cttcgaatgt agctgtcgga aaggcttcaa gctgctgacg
1021 gacgagcgtt catgccagga tattgatgag tgcttttttg agaggacgtg tgaccacact
1081 tgcgtaaact cacctggcag cttccagtgt gtttgcaaca agggctacac tctctacgga
1141 cttgctcatt gtggagacat aaacgaatgc agcttcaaca atggaggatg tgagcacacc
1201 tgcgagaaca ccatgggaag ctttgggtgc cactgtcggg ctggttataa gctgcactgg
1261 aacaagaaag actgtatcga ggcagaggac tctccactag tgccacctcc tgccaggccc
1321 actctcaact gcaataagca gggaggaggc gagctctgct acctaacctg ccagtcacag
1381 gtccacatca gcagcggagc tgaggattca tacacagtga cctgtggcat gccgctgccg
1441 tgccacacag gaggacagtg gaatggatca tattgcccag gttcgggaat caaaaccatt
1501 gccacattta aatctggaca ggggaagtgc aatctgaagc ggagtcatga aaatcttgca
1561 catagcttca aaactgccct gtcagataaa agagccaccg agaatgtcca gttcagcttt
1621 gttagcctgc actgtgcctc ttcaagcaga cagcaacgta gccggcacgg gcggaaggct
1681 ggcgaggagg aaggctcctt cattactgcc cagtttgagc tggatgtgaa cctggaggag
1741 gtaacagcag agggctgtga cctgacttgt gttcggcggc gctctgagaa gcggcttagg
1801 aagaccatcc gtactcttcg caagtccatt aaccgagagc agtttcatct gcactttgct
1861 ggatcagagt atgaactggc taagaaactc gtccgacccg ctgacacacc agatcattgc
1921 ggcactggac aaattctgct ggataaaaaa tgtgtcaaat gcagcgttgg cacatactac
1981 gatggagagc aggggaggtg ctttctttgc ccccctggga cgtaccaaga tgaagagggg
2041 caggtgtcgt gtgacgtgtg cccaggaccc gagggcaggg gaatcccgga aaccgcagaa
2101 gcacgcaaca tctcagagtg tgcaggtcag tgtcgtcccg gtcagttctc ccatgatggt
2161 tttgtgccct gtctgccctg cccacaaggc acctaccagc ctgaggtcgg ccgcacatcc
2221 tgtttcacat gcggaggaag cctcacaacc aaatatgatg gttcggtgtc gttccagaac
2281 tgtgagacta aagttcagtg ctcccctggg cattactaca ataccagcac ccatcgttgt
2341 atccgttgcc cagttggaac ttatcagatg gagtttggcc aaaactactg cattgcctgt
2401 cctggaaaca ctaccactga ttttgataga tccacaaaca taatgcagtg caaaaacaga
2461 cactgtggag gagagctggg agaattcact ggctacatcg aatcccctaa ctaccctggc
2521 aactaccctg ccaacatcga gtgcacctgg accatcaccc ccccacccaa acgcaggatc
2581 ctagtggtgg tgcctgagat ctacttgccc attgaggacg agtgcgggga ctatttagtg
2641 atgcggaaga gctctctgcc caattcagtg acgacttacg agacgtgcca gacgtacgag
2701 cggcccatcg ccttcacctc ccgctccaag aaactctgga tccagttccg ctccaatgaa
2761 ggaaacagtg gaaaaggctt tcaagtgcct tacgcgacgt atgacgagga ctaccaggag
2821 ctcattgagg acatagttag ggatggaaga ttatacgcct ctgagaatca tcaggaaatt
2881 cttaaggaca aaaagctaat gagggccctg tttgatgttc tggctcaccc acagaatttc
2941 ttcaactaca cggcacaaga gtccagagaa atgtttccca aatcttttat cagattcctc
3001 cgctccaaag ttctaagatt cctgcgcccc
//