LOCUS DQ011664 2540 bp DNA circular BCT 06-APR-2020 DEFINITION Bifidobacterium catenulatum plasmid pBC1, complete sequence. ACCESSION DQ011664 VERSION DQ011664.1 DBLINK BioSample: SAMN14224462 KEYWORDS . SOURCE Bifidobacterium catenulatum ORGANISM Bifidobacterium catenulatum Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 2540) AUTHORS Alvarez-Martin,P. and Mayo,B. TITLE Sequence and analysis of plasmid pBC1 from Bifidobacterium catenulatum L48 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2540) AUTHORS Alvarez-Martin,P. and Mayo,B. TITLE Direct Submission JOURNAL Submitted (19-APR-2005) IPLA-CSIC, Carretera de Infiesto s/n, Villaviciosa, Asturias 33300, Spain FEATURES Location/Qualifiers source 1..2540 /organism="Bifidobacterium catenulatum" /mol_type="genomic DNA" /strain="L48" /db_xref="taxon:1686" /plasmid="pBC1" repeat_region 141..159 /note="IR1" /rpt_type=inverted repeat_region 161..179 /note="IR2" /rpt_type=inverted repeat_region 231..254 /note="IR3" /rpt_type=inverted repeat_region 265..284 /note="IR4" /rpt_type=inverted repeat_region 309..332 /rpt_type=direct repeat_region 333..356 /rpt_type=direct repeat_region 357..380 /rpt_type=direct repeat_region 381..394 /rpt_type=direct repeat_region 536..554 /note="IR5" /rpt_type=inverted gene 574..1521 /gene="repB" CDS 574..1521 /gene="repB" /note="replicase; essential replication protein" /codon_start=1 /transl_table=11 /product="RepB" /protein_id="AAY33771.1" /translation="MSDEYSQPTLELSRTFEGWWLPRRPLCCDDDYSQLVRRSRTDAL RCKHIEANPSALVNTIVVDIDDANAKAMALWGHRGMLPNWIAENPANGHAHAGWVLTY PVPRTDMARLKPLKLLHAVTEGLRRSVDGDEGYSGLLMKNPLSDAWDSDLCREDTYDL PDLVAALEEHGDMPPKSWTRTKRAREVGVGRNCTLFDEARTLAYRQVRRLPDRTPASS DLLREYVRRTCHEINASFPDPLPVREVNDTAKSIHKWITTRSRMWRDGAVANAATFVA IQSARGRKGGRGNKRDKQGNVQNAFKQKAELFGKEMMGQ" CDS 1518..1808 /codon_start=1 /transl_table=11 /product="OrfX" /protein_id="AAY33772.1" /translation="MTIQTIRKKRPLPAKELAAMYDVSVRTIQRWASQTRKDWIDEQA TLRESIRAYHDDEGHTWPQTAEHFGMSQDAVRSRCYRARKERAAEAKAARPE" repeat_region 1736..1761 /note="IR6" /rpt_type=inverted repeat_region 1817..1835 /note="IR7" /rpt_type=inverted repeat_region 1838..1856 /note="IR8" /rpt_type=inverted repeat_region 1917..1936 /note="IR9" /rpt_type=inverted repeat_region 1941..1981 /note="IR10" /rpt_type=inverted gene complement(2000..2284) /gene="copG" CDS complement(2000..2284) /gene="copG" /note="contains conserved motif found in CopG proteins" /codon_start=1 /transl_table=11 /product="CopG-like" /protein_id="AAY33773.1" /translation="MSDFSERDRELLAMFGMGEDQVRDDVERMESETAGHGITGPVHY ALHMLPEHGEEMVSMTVKLPKSQLEKVTETARRYHISRSEYVRRQLAGAV" BASE COUNT 473 a 826 c 791 g 450 t ORIGIN 1 agatctccaa acagcacctc caagcaaagt tgataccaga gtaacaccac ggtcacacaa 61 gtggaacacc gttgtggcac aagccgcgcg agcggtctgg aggctccgcc gaccatgggg 121 tacgggtctt cccggcaagc cgattcgcac cgcgaatcga gtgattgtag ctacaatcac 181 gtcgcttgct actccggcct tgcggctttt tcctcggcct cgggttgttg ctcctgcgcc 241 gaagggcgca ggaggtgctg cgttcggttc atgtacatga accgtctagc ttgcttacct 301 tcgatttgat ggacatctcc atgtggatgt ccatggacat atccatgtgg gtgtccatag 361 acgtgtccat gtgggtatcc atggatatat ccatctgagc gcataggaag cgcatgaggg 421 tggatgatcg ttcggtttgg ggtgtttttg gccagatttc gacagttttg ggtaactctg 481 ggaaggagca gcccatgctt tgctgggctg aaatatctga cttggtttta ggcgaacttg 541 accagtggtc aagtacgacg tacactagtg cccatgtctg acgagtattc gcagccgacg 601 cttgagctgt cgcgcacgtt cgagggctgg tggctgcccc ggcgtccgct gtgctgcgac 661 gacgactaca gccagctggt gcgccggagc cgcaccgacg cgctcagatg caagcacatc 721 gaggcgaatc cctcggcgct ggtgaacacg atcgtggtgg acatcgacga cgcgaacgcc 781 aaggcgatgg ccctgtgggg gcaccgtggg atgctgccga actggatcgc ggagaacccg 841 gccaacgggc acgctcacgc gggctgggtg ctgacctacc ccgtgccccg caccgacatg 901 gcccggctca aaccgctgaa gctcctgcac gccgtcaccg aggggctgcg ccgcagcgtg 961 gacggcgacg agggctattc cggcctgctg atgaagaacc cgctgagcga cgcgtgggac 1021 agcgacctgt gccgcgagga cacctacgac ctgcccgacc tcgtggccgc gctcgaagag 1081 cacggggaca tgccgcccaa gagctggacg cgcaccaaac gcgcccgcga ggtcggcgtg 1141 ggccgcaact gcaccttgtt cgacgaggcc cgcaccctcg cctaccgtca ggtgcgccga 1201 ctgcccgacc gcacgcccgc ctcctccgac ctgctgcgcg agtacgtgcg ccgcacctgc 1261 cacgaaatca acgcctcgtt ccccgacccg ctgcccgtgc gcgaggtcaa cgacaccgcc 1321 aagagcatcc acaagtggat caccacgcga agccgcatgt ggagggacgg tgccgtcgcc 1381 aacgccgcca cgttcgtcgc catccaatcc gcgcgcggac gcaaaggcgg tcgcggaaac 1441 aaacgcgaca agcaagggaa cgttcaaaat gccttcaagc aaaaggcaga gctgttcggc 1501 aaggagatga tggggcaatg acgattcaga cgattcgcaa gaagcgtccg cttcccgcca 1561 aggagctggc ggcaatgtac gacgtctccg tgcgcactat tcagcgatgg gcttcacaaa 1621 cccgtaagga ctggatagac gaacaggcaa cgttgcgcga atccatccgt gcctaccacg 1681 atgacgaggg ccatacgtgg ccgcagaccg ccgagcactt cggcatgagc caagacgcgg 1741 tgcgtagccg ctgctaccgc gcgcgcaagg agcgtgcggc cgaggcaaaa gccgcaaggc 1801 cggagtagca agtgacgtga acgtatatac gttcactcga ttcgcaccgc gaatcggctt 1861 gccgggaaga cccgtacccc atggtcggct gcgcctccag accgctcgcg cggcatggtg 1921 acaccgcggt gtcacctatg ggaacacccg tgtgccacga atgatggcac acgggtgttc 1981 cgtcttcgcg cggcggcggt cagacggctc cggcgagctg ccggcgcacg tactcgctgc 2041 ggctgatgtg gtagcgcctg gcggtctccg tgaccttctc cagctgactc ttgggcagct 2101 tgacggtcat gctgaccatc tcctcgccgt gctcggggag catgtgcagc gcgtagtgga 2161 cgggtccggt tatgccgtgg cccgcggtct cggactccat gcgctccacg tcgtccctga 2221 cctgatcctc gcccatgccg aacatcgcca acagctccct gtcgcgttcg ctgaaatcgc 2281 tcatcggtcg ctccttcccc cgcgcaggcg ggctatctcg cttcgggtct tcttcgtcgg 2341 cggcgtcatg gcgtggtaga tgagcgcgcg gtcgccgcgc tgctcgtaga ccatctccac 2401 gtccctgccg cgcccgtcga ggccgatgca gacccacgtg ccgttgtccc tgcgggcgtc 2461 caccatgacg ctcctgaacg ccgcaagcac gtcctccacg gacagctcgg gatgccgctc 2521 atgcacgcgc ggcagcacgt //