LOCUS CU638801 5364 bp mRNA linear VRT 22-JAN-2008
DEFINITION Danio rerio cDNA, clone cssl:d0681.
ACCESSION CU638801
VERSION CU638801.1
KEYWORDS .
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Danio.
REFERENCE 1 (bases 1 to 5364)
AUTHORS Martin S.and.Wright.G.J.
JOURNAL Submitted (22-JAN-2008) to the INSDC. Sanger Institute, Hinxton,
Cambridgeshire, CB10 1SA, UK. E-mail enquiries: gw2@sanger.ac.uk
COMMENT Gift from C. Chien
FEATURES Location/Qualifiers
source 1..5364
/organism="Danio rerio"
/mol_type="mRNA"
/clone="cssl:d0681"
/db_xref="taxon:7955"
mRNA 1..5364
/standard_name="robo3"
CDS 397..4566
/standard_name="robo3"
/db_xref="GOA:Q90Z69"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013106"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="UniProtKB/TrEMBL:Q90Z69"
/db_xref="ZFIN:ZDB-GENE-000209-4"
/protein_id="CAP71950.1"
/translation="MEFRRTLDALVVVFALICLSQGSRPRLEDAAPRIVEHPSDLIVS
KGEPATLNCKAEGRPTPMVEWYKDGERVETDREDPRSHRMLLPSGSLFFLRIVHGRRS
KPDEGVYVCVARNYLGEAVSRNASLEVAILRDDFRQTPSDVVVAAGEPAVMECIPPRG
HPEPTISWKRNNVKVNDKDERITIRGGKLMISNTRKSDAGMYVCVGTNMVGEKDSDPA
ELVVFERPMFVRRPVNQVVLADDTVDFQCEVQGDPAPTIRWKKEEGELPRGRFEIRAD
NSLRLTQVKAEDEGSYTCLSENSVGKAEASGSLQVHVPPQIVVRPRDQISAQGRTVTF
LCGTKGNPPPAVFWQKEGSQVLLFPSQPPSQSGRFSVSLSGELTITDVHSEDSGYYIC
QAISVAGSILTKALLEVESTPSDRIPPIIRQGPANQTLAPGTTAQLQCHVMGNPLPSI
QWERHGQRILGIDERISLMENGTLQITALQETDSGAYTCVASSLSGETSWSGVLTVKE
SGGLSASPVSEPYQLPGPPQKPVVTDVTRNSVTLTWQPNAHEGGAAVTSYIIEAFSQS
AGSTWQTVADFVKLEKHTVTGLSPNTIYLFIVRAVNAYGLSDPSPISEPVRTQDVSPT
GQGVDHRQVQRELGEMSVQLHEPVLLTASSVKISWNVDRQSQYIQGYRLLYRPVGGSW
SQQEVKGATERSAVIANLLKGTEYEIKIRPYFNEFQGLDSRSQTLRTPEEVPSAPPRA
VNVATVKLSNSSSISVSWQPPPTDMQNGVIQEYKVWCLGNDSQTRYNINQTVDGSVLS
TVLKGLLPGVLYQVEVAAVTSAGVGKHSQPVSVLIKLPAEQPTVTGGGSESEENVSLA
EQITDVVKQPAFIAGIGGACWVILMGFSVWIYCRRKKRKELSHYTASFAYTPAVGFPH
GESSGLNGRPGMLGANMGNYPWLADSWPTTNLVHNGKDSVNCCTSKHETPERYYNEAG
ISNYLNQNEKYSADSNEGPIYSTIDPTSEDLRSFTAQYSQHTTPYASTPIMPFTNQAP
CSPEQDGSHWMTQPGTSNAQYAQPDRSKTENVKQPKQKLMGKPVKTPSLNWMDALPPP
PISGDLEQCDEEDDNELIQDMGSDEEEWCPPLPERSYLMDGMVEDGPVPPPRGEASSP
TTSYSHQSTATLTPSPRDDGHFHDIPRLHQLEQPHMTRRLPCGPVPVPRAPSPPLTQS
NPNLSANQECPDNTVPHRSAHKRDLSQGAAQSVENISNTTPGRARPSADHTPSGQKSK
VKKKASKSAQYRRDILQGDLPPPPEPPPEDQDNCAHVGGFECGQTSLERAGSSNSSME
RREQSTPNRKNSAHRRIDADDDLIPYNKPNFLSRGQMSSNCSTTGSSSSRGSTGSRGQ
GTGRKRNDEMR"
BASE COUNT 1418 a 1373 c 1400 g 1173 t
ORIGIN
1 ccacgcgtcc ggaagagtgg ctgtgaggga aatctcactg aacgggcttt taaagaacgg
61 atacttcttt tttttcttcc catacgaaaa ggaaagcatg ttttgcccgt gacatgaacg
121 ttggaggaaa taagcgcgtc tgggacggac tgtgagcatc acatctttat ctgtccgtta
181 cattgactct ttatctgctc gcatcagcgc tcgacaaaca tggattattt gtgatgctga
241 gaaggaaagg cacagttttg ggtttagttt gtgaagttcg tcaacgtgtc cgaatgttta
301 aactcacttc aggtggattg tagcgctttt aggggtgttt taggggactg tttgtccgga
361 taaaggcgac tgaggtggac tttaaatccg aggctgatgg agtttcgcag gactttggat
421 gcgctggtcg ttgtttttgc cctcatatgc ttgtcacaag gatcccggcc taggttggaa
481 gatgctgcac cccggattgt tgaacacccc tcagacctca ttgtttccaa aggtgagcct
541 gcaactttga actgtaaggc cgaaggacga ccaacaccca tggtggagtg gtacaaagat
601 ggcgagcgag tggaaaccga ccgggaggat ccacgctccc accgcatgct cctccccagc
661 ggctccctct tctttctccg aattgttcac ggaaggcgca gcaagccaga tgaaggcgtg
721 tacgtgtgcg tagcaaggaa ttacttgggc gaggccgtca gtcgtaatgc ctctttggag
781 gttgcaattc tccgggatga tttccgacag acccccagtg atgtggtggt ggcggcagga
841 gagccggcag tgatggagtg catccctcca cgaggacacc cagaacccac catctcctgg
901 aagaggaaca atgtgaaagt caacgacaag gacgagagga taacgatccg aggagggaag
961 ctgatgattt ctaacacgcg caaaagtgat gccgggatgt atgtctgtgt cggcaccaat
1021 atggttggag agaaggacag cgatcctgct gagcttgtag tgtttgagcg gcccatgttt
1081 gtgcgcagac ctgtgaatca ggtggttctt gctgatgata cagtggattt ccagtgtgag
1141 gttcaaggag acccagctcc taccatacgc tggaagaaag aggaaggaga actgcctcgg
1201 ggaaggtttg agatccgtgc cgacaacagc ctgcgtctga ctcaggtgaa ggctgaagat
1261 gaaggctcct acacctgttt atcagagaac agcgtgggca aagctgaagc atccggatcg
1321 cttcaggtcc acgttcctcc tcagattgta gtgcgtccgc gggatcagat ctctgcccag
1381 ggccgcactg tcacctttct ctgcggaacg aagggaaatc cccctcctgc tgtgttctgg
1441 cagaaagaag gcagtcaggt cctgctgttt cccagtcagc cgccctcaca gtcaggccgt
1501 ttttccgtgt ctctgagcgg agagcttacc atcacagatg tgcacagcga ggattctggc
1561 tactacatct gccaggctat cagtgtggcg ggcagcatct tgaccaaagc actgctggag
1621 gtggaaagca ctccatctga ccggatccct cccatcatcc gccaaggccc ggccaaccag
1681 acgctagcac cgggcaccac ggcccaattg cagtgccacg tgatgggcaa ccctcttccg
1741 agcatccaat gggagcgcca cggacaacgg atcctgggca tcgacgagcg cattagccta
1801 atggaaaacg gcactttgca aatcacagcc ctgcaggaga cggactccgg ggcctacacc
1861 tgtgttgctt ccagtctgag tggagagacg agctggagtg gtgtgctcac agtaaaagag
1921 agtggtggtc tatcagcatc tccggtatca gagccctatc aactgcccgg tcctcctcag
1981 aaacctgtcg taacggatgt aacccgtaac agtgtcaccc tcacctggca acccaacgca
2041 cacgaaggcg gcgccgccgt cacctcttac atcatcgagg ccttcagtca atcggcaggc
2101 agtacgtggc agacggttgc agattttgtg aagctggaaa agcacacggt caccggattg
2161 tctccgaaca ccatttacct gtttattgtg cgagccgtca atgcatatgg cctgagtgac
2221 ccaagcccaa tttcagagcc cgtacgcaca caagatgtga gtcccacagg tcagggtgtt
2281 gaccatcgtc aagtgcagag ggagctggga gaaatgtctg tacagcttca cgaacccgtg
2341 ctgttgacgg cctccagtgt gaagatcagc tggaacgtgg accgtcagtc gcagtacatc
2401 cagggttatc ggctgcttta tcggcctgtc ggcggttcct ggtcccagca ggaagtgaag
2461 ggtgcaacag agcgtagcgc cgtcatcgct aacctgctca aaggcaccga gtacgagatt
2521 aaaatacgac catactttaa cgagtttcag ggcctggaca gccgatcgca gacactccgc
2581 acgccagagg aggtgccgag tgctcctcct cgagctgtga atgtggccac agtgaagctc
2641 agtaacagct ctagcatcag tgtttcatgg cagcctccac ccacagacat gcagaatgga
2701 gtcattcagg agtacaaggt ttggtgtctg ggcaatgatt ctcagacacg ctacaacatc
2761 aatcagacgg tggacggcag tgtgttaagc actgtactga agggtctgct gcctggcgtc
2821 ctgtaccagg tggaggtggc agcagtgacc agtgcaggag tgggcaaaca cagccaaccc
2881 gtatctgttc ttatcaaatt gccggcagag cagcccacag tcacaggtgg aggcagtgaa
2941 tctgaggaga atgtaagtct ggcggagcag atcacagacg tggtgaagca gcctgccttc
3001 atcgcaggca ttggcggagc atgctgggta atcctgatgg gattcagcgt gtggatctac
3061 tgccgacgca agaagagaaa agagctcagc cattacactg cgtcatttgc atacacaccg
3121 gcagttggtt ttccacatgg tgaaagttct ggacttaacg gaaggcctgg tatgctgggt
3181 gctaacatgg gaaattatcc atggctggct gattcttggc ctactaccaa tcttgtgcac
3241 aacgggaaag actcagtgaa ctgctgtaca tctaaacacg aaacaccgga gagatactat
3301 aacgaggcgg gaatctctaa ttacctcaat caaaatgaga agtacagcgc agactccaac
3361 gaggggccga tctacagcac catcgacccc accagcgaag acttacgcag ttttaccgct
3421 cagtattctc agcacaccac accctacgcc agcactccca ttatgccttt caccaaccag
3481 gcgccctgca gccctgagca agatggcagc cactggatga cgcagccggg aacctccaat
3541 gctcagtatg cccagccaga ccgatccaag actgagaacg taaaacaacc aaagcagaag
3601 ttgatgggga agccggtgaa aaccccatct ctcaactgga tggatgcgct gccgcctcca
3661 cccatctctg gagatctgga gcagtgtgac gaggaggatg ataacgaact aatacaagac
3721 atggggtctg atgaggaaga gtggtgtcct cctctccccg agcggtctta tctcatggac
3781 ggcatggtgg aggacggtcc agttccacca ccaagaggag aagcttcttc acccaccacg
3841 tcctacagcc accagtccac cgccacctta accccttctc cccgagacga tggacatttc
3901 cacgatatac cacgcttaca ccagctcgaa caaccacaca tgacacgccg gttgccgtgt
3961 ggaccagtgc ctgtgccacg agcaccaagc ccacctctaa cccaatccaa cccaaacctg
4021 tcagccaatc aggagtgtcc tgacaacact gtgccacacc gttcagctca taaacgagac
4081 ctgagccaag gagctgcaca aagtgtagag aacatcagca acaccacacc aggtcgagcg
4141 aggccctccg cagaccacac accctctggg cagaaatcca aggtgaagaa gaaagcttcc
4201 aagagcgctc aataccggag agatatactg cagggcgatc tgcctcctcc accagagcct
4261 ccacccgaag accaggataa ttgcgctcat gtagggggct tcgaatgcgg gcagacgtcc
4321 ctcgagagag ccggcagctc caattcgtcc atggagagga gagagcagag cacacccaac
4381 cggaaaaact cggcccatag acggatagac gcagatgacg atttaattcc ttacaacaag
4441 cctaacttcc tgtcccgagg tcagatgtcc agcaattgct ccacaacagg aagttcatca
4501 tcacgagggt caacggggtc gcgagggcaa ggaacgggca ggaagagaaa tgatgagatg
4561 agataaggaa aggctgtgag acgctggaag atttactcag acatccctct gttttcattc
4621 ggaaagcgaa gagaagaacc gaagagaagt gaacgagtgt acagatttga gagtgcgagt
4681 ctggaacttt ttgattgcat tattaattat tgttattatt gttatttatg accttcatgg
4741 gggcattttt tccatcgcgc cgtcactgta aataatcatc cgttgaagct ttttacatgg
4801 gctccagatg ccaggaaaga agagtatatt gtatttatac atgaaagaag aaatgaaatc
4861 atgttaaaag ctccgatatt atagataagt taacgtctga atgtgccaac ctcttgtaga
4921 aatgtataca gcagcatttc aaagcataat aatattgcac tcgcgttgtg ttggagaaca
4981 acaactttaa aaaaaacaag aaaaaaaaca caaaaacaaa gcacaatatg tgttgtttga
5041 ccagccagct agacagccag tctcatgacc taaccgagtc gaggacactt ctgtctctcc
5101 gtcccgtctc cgtctgtgga tcccccccgt cacaaaagaa tgtgctccct tttccctccc
5161 ttttttttcc aagccaagag agtttgacga ctgttgtgaa cgattgtact tgtctttttt
5221 taaggagtgt ttttggagat cgtgaggaaa tgtatttcat tcaaaaaacc aaaattatgt
5281 ttctttgact aactttttgg tagtccttgt tgttttgtat aaataaaata aaatacattt
5341 gctgaaaaaa aaaaaaaaaa aaaa
//