LOCUS BT001877 2360 bp mRNA linear INV 15-NOV-2002
DEFINITION Drosophila melanogaster SD11109 full insert cDNA.
ACCESSION BT001877
VERSION BT001877.1
KEYWORDS FLI_CDNA.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 2360)
AUTHORS Stapleton,M., Brokstein,P., Hong,L., Agbayani,A., Carlson,J.,
Champe,M., Chavez,C., Dorsett,V., Dresnek,D., Farfan,D., Frise,E.,
George,R., Gonzalez,M., Guarin,H., Kronmiller,B., Li,P., Liao,G.,
Miranda,A., Mungall,C.J., Nunoo,J., Pacleb,J., Paragas,V., Park,S.,
Patel,S., Phouanenavong,S., Wan,K., Yu,C., Lewis,S.E., Rubin,G.M.
and Celniker,S.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2002) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road,
Berkeley, CA 94720, USA
COMMENT Sequence submitted by:
Berkeley Drosophila Genome Project
Lawrence Berkeley National Laboratory
Berkeley, CA 94720
This clone was sequenced as part of a high-throughput process to
sequence clones from Drosophila Gene Collection 1 (Rubin et al.,
Science 2000). The sequence has been subjected to integrity checks
for sequence accuracy, presence of a polyA tail and contiguity
within 100 kb in the genome. Thus we believe the sequence to
reflect accurately this particular cDNA clone. However, there are
artifacts associated with the generation of cDNA clones that may
have not been detected in our initial analyses such as internal
priming, priming from contaminating genomic DNA, retained introns
due to reverse transcription of unspliced precursor RNAs, and
reverse transcriptase errors that result in single base changes.
For further information about this sequence, including its location
and relationship to other sequences, please visit our Web site
(http://fruitfly.berkeley.edu) or send email to
cdna@fruitfly.berkeley.edu.
FEATURES Location/Qualifiers
source 1..2360
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
gene 1..2360
/gene="Dscam"
/db_xref="FLYBASE:FBgn0033159"
CDS 520..1866
/gene="Dscam"
/note="Longest ORF"
/codon_start=1
/product="SD11109p"
/protein_id="AAN71649.1"
/db_xref="FLYBASE:FBgn0033159"
/translation="MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKE
PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR
AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYDTDVNKAYVIRGNAAVLKC
EIPSFVADFVSVVSWHTDQNEDFLPGSEYDGKYLVLPSGELHIREVGPEDGYKSYQCR
TKHRLTGETRLSATKGRLVITEPVGFKAPSFPSVASTFTIQSPKNIKLALTCEAQSYP
VPIFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV
ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR
IESVKKEDKGMYQCFVRNDQESAEASAELKLGGRFDVPNSAREQIDWFSAAQNTKI"
BASE COUNT 638 a 632 c 592 g 498 t
ORIGIN
1 agaaccggat ttcagcgcta gtcggcgaat cgcgagagcg tgcgagtatt tgtgtgtgcg
61 tgtgagcgtt tgttttggga caccgatacg gatacgggta cggatagacg gatatacggc
121 agcggtacgc gattagcaat ccgccaaccg gttgcagcgg tgctagtgca ccaccctaca
181 aaaaagtgaa taatagtatg caaagtatct gaaagatagt caagagcaga gcaaagtatc
241 tgtgtttgtg tgtgccgtgc ttttgtgcgg agtcgccacc cccgtggatt agtggcaccc
301 tgctgcaaaa agcccaccac tctcacaagt gtgtgtgtgt gagtgttaac aattaatcgc
361 atttaaaaaa caatttagcc agccgcagta acaataacga taattcggac gtgccaaggg
421 tgcttttcag tggatttttg cgtaaaatcg atagtcagat agacccgctc tctactgcca
481 acttcacaca acccgctcag cggaaacacg gcatacgaaa tgaatatgcc caacgaacgc
541 ctcaaatggc taatgctgtt cgcagctgtt gccctcattg cttgtggtag tcagacccta
601 gctgccaatc ccccagatgc cgaccaaaaa ggacccgtct tcctcaagga acccaccaac
661 cgcattgact tctccaactc cacgggcgca gagatcgagt gcaaggccag cggcaatccc
721 atgcccgaga ttatttggat caggagcgac ggtaccgccg tgggtgatgt gcccggattg
781 cgtcagatct catccgacgg caagctggtc ttccctccct tccgcgccga ggactaccgc
841 caggaggtcc atgcccaggt gtacgcctgc ctggcccgca accagttcgg atccattatc
901 tcccgggacg tccatgtgcg agccgtcgtt gcccaatact acgacaccga tgtaaataag
961 gcctatgtaa tacgcggcaa tgcggcggtt ctgaaatgcg aaatcccctc ctttgtggcc
1021 gattttgtga gcgttgtctc ctggcacacc gatcagaacg aggactttct gccaggcagc
1081 gaatacgatg gaaagtacct ggtattgccc tctggagagc tgcacatccg tgaggttgga
1141 cccgaggacg gatacaagag ctaccagtgc cgaaccaaac atcgtctgac cggagaaacc
1201 cgattaagtg ccacaaaagg acgattggtc atcacagagc ctgtgggatt taaggcgccc
1261 agtttcccca gtgtagcttc aacattcacc atacagtcgc ccaaaaatat caaattggcc
1321 ctaacttgcg aagcccaatc ctatcctgta ccaatattta gatggtacaa gttcatcgaa
1381 ggaacaaccc gtaaacaagc tgtggtttta aatgaccgtg tgaagcaggt ctctggtact
1441 ctcattatta aggacgcagt agtcgaggac tccggaaaat acctgtgcgt ggtgaacaat
1501 tccgtgggag gcgaaagcgt tgagactgtg cttaccgtca ctgcccccct atccgctaag
1561 atcgatcccc ccacccagac agttgacttc ggacgccccg ccgtattcac ttgccagtac
1621 actggaaatc ccatcaagac cgtcagctgg atgaaggacg gcaaggctat cggacacagc
1681 gaatccgtgt tgcgcatcga atccgtgaag aaggaggaca agggcatgta ccagtgcttc
1741 gtaagaaacg accaggaatc ggcggaggcg agtgctgagc tgaagctcgg aggccgtttc
1801 gatgtgccga attcggcacg agagcaaatt gactggttca gcgctgctca aaatacaaag
1861 atttgaatat ctcgaccagg gaaattgcta aataatggct gctgcaccca aggatattga
1921 gaagccccat gtcggcgatt ctgcctctgt gcaccgcatc cgcatcaccc tgacatccag
1981 gaacgtgcgt tcgctggaga atgtgtgccg cgacctgatc aacggtgcaa agaaccagaa
2041 cttgcgcgtc aagggccccg tgcgcatgcc gaccaagacc cttcgcatca ccacccgtaa
2101 gactccttgt ggtgagggtt ccaagacctg ggatcgcttc cagatgagaa tccacaagcg
2161 catcatcgac ttgcactcgc cctctgagat cgtcaagaag attacctcca tcaacatcga
2221 gcccggcgta gaggttgagg tcaccatcgc caactaagat cggcagatgc cacattttta
2281 cacctcgaaa agtttggcgt gctaataaaa acaaagaact ttttccaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa
//