LOCUS BC121049 1999 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens lymphocyte antigen 9, mRNA (cDNA clone MGC:149745
IMAGE:40117946), complete cds.
ACCESSION BC121049
VERSION BC121049.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1999)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1999)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 27 Row: k Column: 8.
FEATURES Location/Qualifiers
source 1..1999
/db_xref="H-InvDB:HIT000388246"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:149745 IMAGE:40117946"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..1999
/gene="LY9"
/gene_synonym="CD229"
/gene_synonym="hly9"
/gene_synonym="mLY9"
/gene_synonym="SLAMF3"
/db_xref="GeneID:4063"
/db_xref="HGNC:HGNC:6730"
/db_xref="MIM:600684"
CDS 530..1747
/gene="LY9"
/gene_synonym="CD229"
/gene_synonym="hly9"
/gene_synonym="mLY9"
/gene_synonym="SLAMF3"
/codon_start=1
/product="LY9 protein"
/protein_id="AAI21050.1"
/db_xref="GeneID:4063"
/db_xref="HGNC:HGNC:6730"
/db_xref="MIM:600684"
/translation="MKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGG
SILTVSGTPCDPDLPYICTAQNPVSQRSSLPVHVGQFCTDPGASRGGTTGETVVGVLG
EPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKSRDPYKNRVWVSSQDC
SLKISQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIYRPERNTKLWIGLFLMVCLLCV
GIFSWCIWKRKGRCSVPAFCSSQAEAPADTPEPTAGHTLYSVLSQGYEKLDTPLRPAR
QQPTPTSDSSSDSNLTTEEDEDRPEVHKPISGRYEVFDQVTQEGAGHDPAPEGQADYD
PVTPYVTEVESVVGENTVYAQVFNLQGKTPVSQKEESSATIYCSIRKPQVVPPPQQND
LEIPESPTYENFT"
BASE COUNT 514 a 568 c 491 g 426 t
ORIGIN
1 tgtggtaagt gcatcctcct tcagtctcag ttctgaaaat agatcatcat ggtggcacca
61 aagagtcaca cagatgactg ggctcctggg cctttctcca gtaagccaca gaggagtcag
121 ctgcaaatat tctcttctgt tctacagacc tctctcctct tcctgctcat gggactaaga
181 gcctctggaa aggactcagc cccaacagtg gtgtcaggga tcctaggggg ttccgtgact
241 ctccccctaa acatctcagt agacacagag attgagaacg tcatctggat tggtcccaaa
301 aatgctcttg ctttcgcacg tcccaaagaa aatgtaacca ttatggtcaa aaagctacct
361 gggccgacta gacatcacca agtggagtta ctccctgtgc atcagcaatc tgactctgaa
421 tgatgcagga tcctacaaag cccagataaa ccaaaggaat tttgaagtca ccactgagga
481 ggaattcacc ctgttcgtct atgagcagct gcaggagccc caagtcacca tgaagtctgt
541 gaaggtgtct gagaacttct cctgtaacat cactctaatg tgctccgtga agggggcaga
601 gaaaagtgtt ctgtacagct ggaccccaag ggaaccccat gcttctgagt ccaatggagg
661 ctccattctt accgtctccg gaacaccatg tgacccagac ctgccataca tctgcacagc
721 ccagaacccc gtcagccaga gaagctccct ccctgtccat gttgggcagt tctgtacaga
781 tccaggagcc tccagaggag gaacaacggg ggagactgtg gtaggggtcc tgggagagcc
841 agtcaccctg ccacttgcac tcccagcctg ccgggacaca gagaaggttg tctggttgtt
901 taacacatcc atcattagca aagagaggga agaagcagca acggcagatc cactcattaa
961 atccagggat ccttacaaga acagggtgtg ggtctccagc caggactgct ccctgaagat
1021 cagccagctg aagatagagg acgccggccc ctaccatgcc tacgtgtgct cagaggcctc
1081 cagcgtcacc agcatgacac atgtcaccct gctcatctac cgacctgaga gaaacacaaa
1141 gctttggatt gggttgttcc tgatggtttg ccttctgtgc gttgggatct tcagctggtg
1201 catttggaag cgaaaaggac ggtgttcagt cccagccttc tgttccagcc aagctgaggc
1261 cccagcggat acaccagaac ccacagctgg ccacacgcta tactctgtgc tctcccaagg
1321 atatgagaag ctggacactc ccctcaggcc tgccaggcaa cagcctacac ccacctcaga
1381 cagcagctct gacagcaacc tcacaactga ggaggatgag gacaggcctg aggtgcacaa
1441 gcccatcagt ggaagatatg aggtgtttga ccaggtcact caggagggcg ctggacatga
1501 cccagcccct gagggccaag cagactatga tcccgtcact ccatatgtca cggaagttga
1561 gtctgtggtt ggagagaaca ccgtgtatgc acaagtgttc aacttacagg gaaagacccc
1621 agtttctcag aaggaagaga gctcagccac aatctactgc tccatacgga aacctcaggt
1681 ggtgccacca ccacaacaga atgatcttga gattcctgaa agtcctacct atgaaaattt
1741 cacctgaaag gaaaagcagc tgctgcctct ctcctgggac cgtggggttg gaaagtcagc
1801 tggacctcat ggggcctggg gctcgcagac agaagcacct cagaatttcc ttcagtgcct
1861 cagagatgcc tggatgtggc ccctccccct ccttctcacc cttaaggact cccaaaccca
1921 ttaatagttc agacacaggc tccttcttgg agcctatggg cttcagatgt ctttgcccca
1981 tttgtcacct cgcacaaaa
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