LOCUS BC120602 1344 bp mRNA linear ROD 07-AUG-2006
DEFINITION Mus musculus programmed cell death 1, mRNA (cDNA clone MGC:155839
IMAGE:40129525), complete cds.
ACCESSION BC120602
VERSION BC120602.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1344)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1344)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCK Plate: 3 Row: E Column: 22.
FEATURES Location/Qualifiers
source 1..1344
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:155839 IMAGE:40129525"
/tissue_type="Thymus, PCR rescued clones"
/clone_lib="NIH_MGC_385"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: TGTCCTGT"
gene 1..1344
/gene="Pdcd1"
/gene_synonym="Ly101"
/gene_synonym="PD-1"
/db_xref="GeneID:18566"
/db_xref="MGI:MGI:104879"
CDS 33..899
/gene="Pdcd1"
/gene_synonym="Ly101"
/gene_synonym="PD-1"
/codon_start=1
/product="programmed cell death 1"
/protein_id="AAI20603.1"
/db_xref="GeneID:18566"
/db_xref="MGI:MGI:104879"
/translation="MWVRQVPWSFTWAVLQLSWQSGWLLEVPNGPWRSLTFYPAWLTV
SEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFCNGLSQPVQDARFQIIQLPN
RHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETSTRYPSPSP
KPEGRFQGMVIGIMSALVGIPVLLLLAWALAVFCSTSMSEARGAGSKDDTLKEEPSAA
PVPSVAYEELDFQGREKTPELPTACVHTEYATIVFTEGLGASAMGRRGSADGLQGPRP
PRHEDGHCSWPL"
BASE COUNT 303 a 387 c 374 g 280 t
ORIGIN
1 tactgaaggc gacactgcca ggggctctgg gcatgtgggt ccggcaggta ccctggtcat
61 tcacttgggc tgtgctgcag ttgagctggc aatcagggtg gcttctagag gtccccaatg
121 ggccctggag gtccctcacc ttctacccag cctggctcac agtgtcagag ggagcaaatg
181 ccaccttcac ctgcagcttg tccaactggt cggaggatct tatgctgaac tggaaccgcc
241 tgagtcccag caaccagact gaaaaacagg ccgccttctg taatggtttg agccaacccg
301 tccaggatgc ccgcttccag atcatacagc tgcccaacag gcatgacttc cacatgaaca
361 tccttgacac acggcgcaat gacagtggca tctacctctg tggggccatc tccctgcacc
421 ccaaggcaaa aatcgaggag agccctggag cagagctcgt ggtaacagag agaatcctgg
481 agacctcaac aagatatccc agcccctcgc ccaaaccaga aggccggttt caaggcatgg
541 tcattggtat catgagtgcc ctagtgggta tccctgtatt gctgctgctg gcctgggccc
601 tagctgtctt ctgctcaaca agtatgtcag aggccagagg agctggaagc aaggacgaca
661 ctctgaagga ggagccttca gcagcacctg tccctagtgt ggcctatgag gagctggact
721 tccagggacg agagaagaca ccagagctcc ctaccgcctg tgtgcacaca gaatatgcca
781 ccattgtctt cactgaaggg ctgggtgcct cggccatggg acgtaggggc tcagctgatg
841 gcctgcaggg tcctcggcct ccaagacatg aggatggaca ttgttcttgg cctctttgac
901 cagattcttc agccattagc atgctgcaga ccctccacag agagcaccgg tccgtccctc
961 agtcaagagg agcatgcagg ctacagttca gccaaggctc ccagggtctg agctagctgg
1021 agtgacagcc cagcgcctgc accaattcca gcacatgcac tgttgagtga gagctcactt
1081 caggtttacc acaagctggg agcagcaggc ttcccggttt cctattgtca caaggtgcag
1141 agctggggcc taagcctatg tctcctgaat cctactgttg ggcacttcta gggacttgag
1201 acactatagc caatggcctc tgtgggttct gtgcctggaa atggagagat ctgagtacag
1261 cctgctttga atggctctct gaggcaaccc caaagcaagg gggtccaggt atactatggg
1321 cccagcacct aaagccaccc ttgg
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