LOCUS BC117099 1282 bp mRNA linear ROD 04-AUG-2006
DEFINITION Mus musculus signaling lymphocytic activation molecule family
member 1, mRNA (cDNA clone MGC:151476 IMAGE:40126418), complete
cds.
ACCESSION BC117099
VERSION BC117099.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1282)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1282)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCK Plate: 1 Row: P Column: 11.
FEATURES Location/Qualifiers
source 1..1282
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:151476 IMAGE:40126418"
/tissue_type="Thymus, PCR rescued clones"
/clone_lib="NIH_MGC_386"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: CAGACACA"
gene 1..1282
/gene="Slamf1"
/gene_synonym="4933415F16"
/gene_synonym="CD150"
/gene_synonym="CDw150"
/gene_synonym="IPO-3"
/db_xref="GeneID:27218"
/db_xref="MGI:MGI:1351314"
CDS 37..1068
/gene="Slamf1"
/gene_synonym="4933415F16"
/gene_synonym="CD150"
/gene_synonym="CDw150"
/gene_synonym="IPO-3"
/codon_start=1
/product="signaling lymphocytic activation molecule family
member 1"
/protein_id="AAI17100.1"
/db_xref="GeneID:27218"
/db_xref="MGI:MGI:1351314"
/translation="MDPKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTW
LPLTNEHQINKSVNKSVRILVTMATSPGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSK
NLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGT
CSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPV
SSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHC
QPPVEEKSLTIYAQVQKSGPQEKKLHDALTDQDPCTTIYVAATEPAPESVQEPNPTTV
YASVTLPES"
BASE COUNT 368 a 336 c 304 g 274 t
ORIGIN
1 ctcacagctg gggaccctgt ctgcgattgc tggctaatgg atcccaaagg atccctttcc
61 tggagaatac ttctgtttct ctccctggct tttgagttga gctacggaac aggtggaggt
121 gtgatggatt gcccagtgat tctccagaag ctgggacagg acacgtggct gcccctgacg
181 aatgaacatc agataaataa gagcgtgaac aaaagtgtcc gcatcctcgt caccatggcg
241 acgtccccag gaagcaaatc caacaagaaa attgtgtctt ttgatctctc taaagggagc
301 tatccagatc acctggagga tggctaccac tttcaatcga aaaacctgag cctgaagatc
361 ctcgggaaca ggcgggagag tgaaggatgg tacttggtga gcgtggagga gaacgtttct
421 gttcagcaat tctgcaagca gctgaagctt tatgaacagg tctcccctcc agagattaaa
481 gtgctaaaca aaacccagga gaacgagaat gggacctgca gcttgctgtt ggcctgcaca
541 gtgaagaaag gggaccatgt gacttacagc tggagtgatg aggcaggcac ccacctgctg
601 agccgagcca accgctccca cctcctgcac atcactctta gcaaccagca tcaagacagc
661 atctacaact gcaccgcaag caaccctgtc agcagtatct ctaggacctt caacctatca
721 tcgcaagcat gcaagcagga atcctcctca gaatcgagtc catggatgca atatactctt
781 gtaccactgg gggtcgttat aatcttcatc ctagttttca cggcaataat aatgatgaaa
841 agacaaggta aatcaaatca ctgccagcca ccagtggaag aaaaaagcct tactatttat
901 gcccaagtac agaaatcagg gcctcaagag aagaaacttc atgatgccct aacagatcag
961 gacccctgca caaccattta tgtggctgcc acagagcctg ccccagagtc tgtccaggaa
1021 ccaaacccca ccacagttta tgccagtgtg acactgccag agagctgacc catataccca
1081 gtgaaaggac tttttgaagg aggatagaag aaccaaaatc cacactgaac tggaccccgg
1141 gtcccaagtt ctctgtgaca gaaactgcac atctgtaacc ttctccaatc agttccctgg
1201 tgacggatct gcacaggcat gcttatgaag tagatgagaa gtgaggcttc ctgggcatgc
1261 aacctgctct gctgctgaca ca
//