LOCUS BC107725 1240 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens SET and MYND domain containing 3, mRNA (cDNA clone
IMAGE:4287295), complete cds.
ACCESSION BC107725
VERSION BC107725.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1240)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1240)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 61 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12232400
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1240
/db_xref="H-InvDB:HIT000338855"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4287295"
/tissue_type="Brain, primitive neuroectodermal"
/clone_lib="NIH_MGC_56"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1240
/gene="SMYD3"
/gene_synonym="bA74P14.1"
/gene_synonym="FLJ21080"
/db_xref="GeneID:64754"
/db_xref="HGNC:HGNC:15513"
/db_xref="MIM:608783"
CDS 100..648
/gene="SMYD3"
/gene_synonym="bA74P14.1"
/gene_synonym="FLJ21080"
/codon_start=1
/product="SMYD3 protein"
/protein_id="AAI07726.1"
/db_xref="GeneID:64754"
/db_xref="HGNC:HGNC:15513"
/db_xref="MIM:608783"
/translation="MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGS
RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSV
RLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQ
DASQLPPAFDLFEAFAKPIGMK"
BASE COUNT 351 a 259 c 269 g 361 t
ORIGIN
1 gggggtgcgc gcagggcgca ggcgcgcggg tcccggcagc ccgtgagacg cccgctgctg
61 gacgcgggta gccgtctgag gtgccggagc tgcgggagga tggagccgct gaaggtggaa
121 aagttcgcaa ccgccaacag gggaaacggg ctgcgcgccg tgaccccgct gcgccccgga
181 gagctactct tccgctcgga tcccttggcg tacacggtgt gcaaggggag tcgtggcgtc
241 gtctgcgacc gctgccttct cgggaaggaa aagctgatgc gatgctctca gtgccgcgtc
301 gccaaatact gtagtgctaa gtgtcagaaa aaagcttggc cagaccacaa gcgggaatgc
361 aaatgcctta aaagctgcaa acccagatat cctccagact ccgttcgact tcttggcaga
421 gttgtcttca aacttatgga tggagcacct tcagaatcag agaagcttta ctcattttat
481 gatctggagt caaatattaa caaactgact gaagataaga aagagggcct caggcaactc
541 gtaatgacat ttcaacattt catgagagaa gaaatacagg atgcctctca gctgccacct
601 gcctttgacc tttttgaagc ctttgcaaaa cccataggca tgaaatgatt gcttcttgat
661 atttaccctg ggatagggat gacagaaaca ccccctcact gctatggatc tgctgtcctc
721 gctttctcac attgtgtgtt tgcatttgtt ttaatgttga tcacaattta ataacaagta
781 aaactttact tttgacaatt ttgccactta ttttgtaatt tgtaagcaca cgtttgaaga
841 tatatttatg ccattaatat tttaaggcat gttttaaaat ttactgtttt ctgaaaaatt
901 aaatgtaatt ggtttgattg ctggagattt attccagttt ttctcaaatg tatttttatt
961 ctgtatggta catttttatg attttctgat taatgtcatc ttagcattat attctggtta
1021 tctataattt aaaattgatt tcaaaattta ctgatttctt acagtgcatc tgaaaacttt
1081 ctcatctatt tcatatgctt ctgaaaatta taacctgtag tagtatcgtg taccgtgccc
1141 aaggctgttt tcatgttcaa cactataaac acgaacacct actgaaagat aaaaatatac
1201 cttatgatga ctaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//