LOCUS BC106107 1205 bp mRNA linear ROD 21-JUL-2006
DEFINITION Mus musculus histocompatibility 2, class II antigen E alpha, mRNA
(cDNA clone MGC:117888 IMAGE:3491637), complete cds.
ACCESSION BC106107
VERSION BC106107.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1205)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1205)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Gilbert Smith, Ph.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 217 Row: c Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31982788.
FEATURES Location/Qualifiers
source 1..1205
/organism="Mus musculus"
/mol_type="mRNA"
/strain="Czech II"
/db_xref="taxon:10090"
/clone="MGC:117888 IMAGE:3491637"
/tissue_type="Mammary tumor metastatized to lung. Tumor
arose spontaneously from a senescent normal mammary
(clonal) outgrowth infected with the virus MMTV."
/clone_lib="NCI_CGAP_Lu29"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1205
/gene="H2-Ea"
/gene_synonym="E-alpha-f"
/db_xref="GeneID:14968"
/db_xref="MGI:MGI:95900"
CDS 30..797
/gene="H2-Ea"
/gene_synonym="E-alpha-f"
/codon_start=1
/product="histocompatibility 2, class II antigen E alpha"
/protein_id="AAI06108.1"
/db_xref="GeneID:14968"
/db_xref="MGI:MGI:95900"
/translation="MATIGALVLRFFFIAVLMSSQKSWAIKEEHTIIQAEFYLLPDKR
GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERS
NNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSET
VFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFEEKTLLPETKENV
VCALGLFVGLVGIVVGIILIMKGIKKRNVVERRQGAL"
BASE COUNT 341 a 273 c 269 g 322 t
ORIGIN
1 tctgaaccca ccaaacaccc aagaagaaaa tggccacaat tggagccctg gtgttaagat
61 ttttcttcat tgctgttctg atgagctccc agaagtcatg ggctatcaaa gaggaacaca
121 ccatcatcca ggcggagttc tatcttttac cagacaaacg tggagagttt atgtttgact
181 ttgacggcga tgagattttc catgtagaca ttgaaaagtc agagaccatc tggagacttg
241 aagaatttgc aaagtttgcc agctttgagg ctcagggtgc actggctaat atagctgtgg
301 acaaagctaa cctggatgtc atgaaagagc gttccaacaa cactccagat gccaacgtgg
361 ccccagaggt gactgtactc tccagaagcc ctgtgaacct gggagagccc aacatcctca
421 tctgtttcat tgacaagttc tcccctccag tggtcaatgt cacctggctc cggaatggac
481 ggcctgtcac cgaaggcgtg tcagagacag tgtttctccc gagggacgat cacctcttcc
541 gcaaattcca ctatctgacc ttcctgccct ccacagatga tttctatgac tgtgaggtgg
601 atcactgggg tttggaggag cccctgcgga agcactggga gtttgaagag aaaaccctcc
661 tcccagaaac taaagagaat gtcgtgtgtg ctcttgggtt gtttgtgggt ctggtgggca
721 tcgttgtggg gattatcctc atcatgaagg gtattaaaaa acgcaatgtt gtagaacgcc
781 gacaaggagc cctgtgagat acctggaggc aatgccttca gttaaagttc agtgaagaaa
841 cttgctgtga cagcgtctga ggctacccct ttcagttgtt catctcagcg gagacctcat
901 cttcttcagt ttccagcatt aagcctcaag aatggcggca ggttctctga tctaatgtct
961 ggctggggtt ctccatctcc cacctgtatc tatattctat cttccaccat ttataataat
1021 tcctctgtga caaatatcac aaagttcttc ctccgctgtg gaactttctg agaatggagt
1081 catcttctcc aaactgtgtt cttttttttt ttttttttta caaataataa acaccttggg
1141 ttgtgacgtg gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaa
//