LOCUS BC099464 1423 bp mRNA linear ROD 18-JUL-2005
DEFINITION Mus musculus lymphotoxin A, mRNA (cDNA clone MGC:117668
IMAGE:30846267), complete cds.
ACCESSION BC099464
VERSION BC099464.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1423)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1423)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Shioko Kimura/Atsushi Yamada, (NCI,CCR)
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 238 Row: h Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7106342.
FEATURES Location/Qualifiers
source 1..1423
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:117668 IMAGE:30846267"
/tissue_type="Thyroid, mouse (Black Swiss/Taconic), 4-5
weeks, normal wild-type, pooled from 5 mice"
/clone_lib="NIH_MGC_230"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..1423
/gene="Lta"
/gene_synonym="LT"
/gene_synonym="LT-alpha"
/gene_synonym="LT-[a]"
/gene_synonym="LT[a]"
/gene_synonym="TNF-beta"
/gene_synonym="TNFSF1"
/gene_synonym="Tnfsf1b"
/db_xref="GeneID:16992"
/db_xref="MGI:MGI:104797"
CDS 203..811
/gene="Lta"
/gene_synonym="LT"
/gene_synonym="LT-alpha"
/gene_synonym="LT-[a]"
/gene_synonym="LT[a]"
/gene_synonym="TNF-beta"
/gene_synonym="TNFSF1"
/gene_synonym="Tnfsf1b"
/codon_start=1
/product="Lta protein"
/protein_id="AAH99464.1"
/db_xref="GeneID:16992"
/db_xref="MGI:MGI:104797"
/translation="MTLLGRLHLLRVLGTPPVFLLGLLLALPLGAQGLSGVRFSAART
AHPLPQKHLTHGILKPAAHLVGYPSKQNSLLWRASTDRAFLRHGFSLSNNSLLIPTSG
LYFVYSQVVFSGESCSPRAIPTPIYLAHEVQLFSSQYPFHVPLLSAQKSVYPGLQGPW
VRSMYQGAVFLLSKGDQLSTHTDGISHLHFSPSSVFFGAFAL"
BASE COUNT 353 a 438 c 332 g 300 t
ORIGIN
1 gtctaagccc ttagcctgcg gttctctcct aggccccagc ctttcctgcc ttcgactgaa
61 acagcagcat cttctaagcc ctgggggctt ccccaagccc cagccccgac ctagaacccg
121 cccgctgcct gccacactgc cgcttcctct ataaagggac ccgagcgcca gcgcccagga
181 ccccgcacag caggttctcc acatgacact gctcggccgt ctccacctct tgagggtgct
241 tggcacccct cctgtcttcc tcctggggct gctgctggcc ctgcctctag gggcccaggg
301 actctctggt gtccgcttct ccgctgccag gacagcccat ccactccctc agaagcactt
361 gacccatggc atcctgaaac ctgctgctca ccttgttggg taccccagca agcagaactc
421 actgctctgg agagcaagca cggatcgtgc ctttctccga catggcttct ctttgagcaa
481 caactccctc ctgatcccca ccagtggcct ctactttgtc tactcccagg tggttttctc
541 tggagaaagc tgctccccca gggccattcc cactcccatc tacctggcac acgaggtcca
601 gctcttttcc tcccaatacc ccttccatgt gcctctcctc agtgcgcaga agtctgtgta
661 tccgggactt caaggaccgt gggtgcgctc aatgtaccag ggggctgtgt tcctgctcag
721 taagggagac cagctgtcca cccacaccga cggcatctcc catctacact tcagccccag
781 cagtgtattc tttggagcct ttgcactgta gattctaaag aaacccaaga attggattcc
841 aggcctccat cctgaccgtt gtttcaaggg tcacatcccc acagtctcca gccttcccca
901 ctaaaataac ctggagctct cacgggagtc tgagacactt caggggacta catcttcccc
961 agggccactc cagatgctca ggggacgact caagcctacc tagaagttcc tgcacagagc
1021 agggtttttg tgggtctagg tcggacagag acctggacat gaaggaggga cagacatggg
1081 agaggtggct gggaacaggg gaaggttgac tatttatgga gagaaaagtt aagttattta
1141 tttatagaga atagaaagag gggaaaaata gaaagccgtc agatgacaac taggtcccag
1201 acacaaaggt gtctcacctc agacaggacc catctaagag agagatggcg agagaattag
1261 atgtgggtga ccaaggggtt ctagaagaaa gcacgaagct ctaaaagcca gccactgctt
1321 ggctagacat ccacagggac cccctgcacc atctgtgaaa cccaataaac ctcttttctc
1381 tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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