LOCUS BC095921 2419 bp mRNA linear ROD 01-SEP-2006
DEFINITION Mus musculus lymphocyte antigen 9, mRNA (cDNA clone MGC:103202
IMAGE:4935844), complete cds.
ACCESSION BC095921
VERSION BC095921.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2419)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2419)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lothar Hennighausen Ph.D., Priscilla Furth
Ph.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 193 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6678755.
FEATURES Location/Qualifiers
source 1..2419
/organism="Mus musculus"
/mol_type="mRNA"
/strain="NMRI"
/db_xref="taxon:10090"
/clone="MGC:103202 IMAGE:4935844"
/tissue_type="Mammary tumor. WAP-Tag model. 5 months old,
gross tissue."
/clone_lib="NCI_CGAP_Mam4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2419
/gene="Ly9"
/gene_synonym="CD229"
/gene_synonym="Lgp100"
/gene_synonym="SLAMF3"
/gene_synonym="T100"
/db_xref="GeneID:17085"
/db_xref="MGI:MGI:96885"
CDS 11..1975
/gene="Ly9"
/gene_synonym="CD229"
/gene_synonym="Lgp100"
/gene_synonym="SLAMF3"
/gene_synonym="T100"
/codon_start=1
/product="lymphocyte antigen 9"
/protein_id="AAH95921.1"
/db_xref="GeneID:17085"
/db_xref="MGI:MGI:96885"
/translation="MADLKRYWCDWALSPLSENPRMSQQQIFSPILWIPLLFLLMGLG
ASGKETPPTVISGMLGGSVTFSLNISKDAEIEHITWNCPPKALALVSYKKDITILDKG
YNGRLKVSEDGYSLYMSNLTKSDSGSYYAQINQKNVTLTTNKEFTLHIYEKLQKPQII
VESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDL
PYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRAT
KNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPY
HAYVCSEASRDPSVRHFTLLVYKRLEKPSVTNSPVHMMNGICKVVLTCSVDGGGNNVT
YTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPER
NKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSV
LSQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRIHSTANSRNQVYDLVTH
QDIAHALAYEGQVEYEAITPYDKVDESMDEEDMAYIQVSLNVQGETPLPQKKEDSNTI
YCSVQKPKKTAQTPQQDAESPETPTYENFT"
BASE COUNT 702 a 600 c 577 g 540 t
ORIGIN
1 gtacaccatc atggcggatc taaagagata ttggtgtgac tgggctctaa gtccactctc
61 tgaaaatcca agaatgagtc agcagcagat attttctccc attctttgga ttcctctcct
121 cttcctactc atggggctcg gagcctctgg aaaggaaaca cctccaacag tgatatcagg
181 gatgctaggg ggttctgtga ctttctccct aaacatctca aaggatgcag agattgagca
241 tatcacctgg aattgtcccc caaaggctct tgctttagta tcctacaaaa aagatataac
301 tattctggac aaaggatata atggcagact caaagtcagc gaagatggct actccttgta
361 catgagcaac ctaaccaaga gtgattcagg atcctattat gctcagataa accaaaagaa
421 tgttaccctc accacaaata aagagttcac actgcacatc tatgagaagc tccagaagcc
481 tcagatcatc gtggaatctg tgaccccatc cgatactgat tcctgcacct tcaccctaat
541 ctgcactgta aaggggacaa aggacagtgt ccagtacagc tggacccgag aggacaccca
601 tttaaataca tacgatggaa gccacaccct cagggtttcc cagagtgtct gtgaccccga
661 cctaccctat acctgcaaag cctggaatcc agtcagccaa aacagctccc aacctgtccg
721 catctggcaa ttctgcacag gagcctccag aagaaaaaca gcagcgggga agactgtggt
781 aggaatcctg ggagagccag tgaccctgcc cttggaattt cgggccactc gggccacaaa
841 gaatgttgtc tgggtgttta acacgtcggt tatcagccaa gaacggagag gagcagcaac
901 agcggattct cgccgtaagc ccaaaggttc tgaagaaagg agggtgagga cctctgacca
961 ggaccaatcc ctgaagatca gccagctgaa gatggaggac gcgggcccct accatgccta
1021 tgtgtgctca gaggcctccc gagaccccag tgtgagacat ttcaccttgc ttgtctacaa
1081 gagactggag aagcccagtg tcaccaacag tcctgtgcac atgatgaacg gaatctgcaa
1141 ggttgtcctg acctgttcag tggacggtgg tggaaacaat gtgacataca catggatgcc
1201 tctacaaaac aaagctgtca tgtcccaagg gaagtcgcac ctcaatgtct cctgggaaag
1261 tggtgaacac ctgcccaact tcacatgcac agcccataac cctgtcagca acagctccag
1321 ccagttttct tctgggacca tctgttcagg ccctgagaga aacaagaggt tttggctcct
1381 gctcctcctg gttttgctct tgttgatgct cattggcggt tacttcattt tgaggaaaaa
1441 gaagcagtgt tcgtctttgg ccaccaggta cagacaagcg gaggtcccag ctgaaatacc
1501 agaaacccca actggccatg gacaattttc tgtgctctcc caacggtatg agaaactaga
1561 catgtctgct aagaccacca ggcatcagcc tacacccacc tcagatacca gctctgagag
1621 cagcgcaaca acagaagagg atgacgaaaa gaccagaatt cacagcactg ctaatagtag
1681 aaatcaggtg tatgacttgg tcacccatca ggacattgca catgccttgg cctatgaggg
1741 gcaagtagaa tatgaagcaa tcactccata tgataaagtg gatgagtcta tggatgaaga
1801 ggacatggca tatatacaag tgtccctgaa tgtgcaggga gagaccccac ttcctcagaa
1861 gaaagaagac tcaaatacaa tctactgctc tgtgcagaag cctaaaaaga cggcacaaac
1921 accacagcaa gacgctgagt ctcctgaaac ccctacctat gaaaatttca cctgaaggga
1981 aaagcggctg ctacttctgg ggtgaggatt tggagaaaaa cagacatcat aaatcctcct
2041 gtttctgcag aaaggacaca tcggaatttc ctgccatggc ttagactagc ctgaatttga
2101 tgccttcctc ttcttgtcat cctccttacc ccatgagccc attcacaggt caggcagagt
2161 ctccttggag cctacaggct ttgaacaccc tgcctttgga tctctttttc ttatctggac
2221 tgccttgtct gcctcagtgg gggaggatgc acttagtcct gttgggactt gatgtgccag
2281 ggtgggttgg taccgtctct gagaagaagg ggagatggga attgggggag ggatgtgagg
2341 gagggatggg aggcctgtgg tcaatatgta aagtgaataa ataaactaat aaagaaaaaa
2401 attaaaaaaa aaaaaaaaa
//